Wall clock time and date at job start Tue Mar 31 2020 20:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29928 * 125.37710 * 2 1 4 4 C 1.36074 * 108.47468 * 179.97438 * 3 2 1 5 5 C 1.47422 * 126.44622 * 179.97438 * 4 3 2 6 6 O 1.21609 * 119.99712 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00105 * 0.02562 * 5 4 3 8 8 C 1.46504 * 119.99969 * 180.02562 * 7 5 4 9 9 H 1.09006 * 109.46475 * 35.00453 * 8 7 5 10 10 C 1.53002 * 109.47059 * 275.00655 * 8 7 5 11 11 C 1.52992 * 109.46891 * 155.00644 * 8 7 5 12 12 H 1.09002 * 109.47103 * 294.99921 * 11 8 7 13 13 C 1.52997 * 109.47482 * 55.00168 * 11 8 7 14 14 N 1.46902 * 109.47181 * 175.00390 * 11 8 7 15 15 C 1.46895 * 111.00561 * 154.99678 * 14 11 8 16 16 C 1.50699 * 109.47505 * 180.02562 * 15 14 11 17 17 O 1.21295 * 119.99607 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00043 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99820 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00168 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99647 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00321 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99765 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46915 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47110 * 119.99461 * 23 21 19 26 26 H 1.48498 * 109.46966 * 239.99913 * 23 21 19 27 27 C 1.36086 * 107.10279 * 0.22184 * 4 3 2 28 28 C 1.50703 * 126.52442 * 179.77755 * 27 4 3 29 29 O 1.34048 * 125.37438 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47167 * 90.00340 * 1 2 3 31 31 H 1.09004 * 109.46942 * 210.00536 * 1 2 3 32 32 H 1.08998 * 109.46688 * 330.00053 * 1 2 3 33 33 H 0.97003 * 119.99850 * 0.02562 * 7 5 4 34 34 H 1.09004 * 109.47334 * 59.99995 * 10 8 7 35 35 H 1.09000 * 109.46593 * 180.02562 * 10 8 7 36 36 H 1.08998 * 109.46891 * 300.00020 * 10 8 7 37 37 H 1.09002 * 109.47153 * 59.99783 * 13 11 8 38 38 H 1.09001 * 109.46832 * 299.99974 * 13 11 8 39 39 H 1.09004 * 109.47261 * 179.97438 * 13 11 8 40 40 H 1.00906 * 110.99706 * 278.95562 * 14 11 8 41 41 H 1.09004 * 109.46925 * 300.00216 * 15 14 11 42 42 H 1.09001 * 109.46797 * 59.99650 * 15 14 11 43 43 H 0.97001 * 120.00239 * 359.97438 * 18 16 15 44 44 H 0.96999 * 119.99987 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.47119 * 90.00211 * 28 27 4 46 46 H 1.08994 * 109.46936 * 209.99830 * 28 27 4 47 47 H 1.08990 * 109.46932 * 329.99809 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5438 0.0003 6 8 5.8605 1.0618 0.0004 7 7 4.5879 2.8825 -0.0002 8 6 5.7633 3.7570 -0.0011 9 1 6.5569 3.2982 -0.5908 10 6 6.2483 3.9610 1.4356 11 6 5.3917 5.1101 -0.6109 12 1 5.1311 4.9762 -1.6608 13 6 4.1953 5.6970 0.1407 14 7 6.5349 6.0263 -0.5032 15 6 6.4753 7.0667 -1.5385 16 6 7.6618 7.9849 -1.3970 17 8 8.4767 7.7919 -0.5195 18 7 7.8168 9.0212 -2.2446 19 6 8.8960 9.8569 -2.1155 20 1 9.6216 9.6850 -1.3343 21 6 9.0561 10.9249 -2.9898 22 7 8.1734 11.1337 -3.9407 23 14 10.5261 12.0640 -2.8135 24 1 11.3650 11.6164 -1.6728 25 1 11.3295 12.0322 -4.0619 26 1 10.0519 13.4492 -2.5650 27 6 3.5660 -0.6971 -0.0041 28 6 4.7802 -1.5898 -0.0101 29 8 2.2831 -1.0930 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3632 0.8900 0.5138 33 1 3.6973 3.2669 0.0001 34 1 6.5130 2.9970 1.8701 35 1 7.1225 4.6120 1.4349 36 1 5.4546 4.4196 2.0253 37 1 4.4559 5.8309 1.1906 38 1 3.3470 5.0172 0.0608 39 1 3.9308 6.6612 -0.2935 40 1 6.5851 6.4351 0.4179 41 1 6.4926 6.6003 -2.5236 42 1 5.5556 7.6404 -1.4243 43 1 7.1649 9.1757 -2.9461 44 1 8.2854 11.8791 -4.5512 45 1 5.0754 -1.8085 1.0162 46 1 4.5445 -2.5202 -0.5265 47 1 5.5988 -1.0862 -0.5241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734000226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:31 Heat of formation + Delta-G solvation = -55.446158 kcal Electronic energy + Delta-G solvation = -28695.413677 eV Core-core repulsion = 24493.818227 eV Total energy + Delta-G solvation = -4201.595449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.81433 -39.97695 -38.45759 -37.32514 -35.30151 -34.47084 -33.77361 -33.42954 -31.31366 -30.93272 -30.40691 -29.08320 -26.72353 -26.34619 -24.75932 -24.02831 -23.21203 -21.82014 -20.62779 -19.76344 -19.30462 -18.31903 -17.88073 -17.44043 -16.32992 -16.12447 -15.82713 -15.54580 -15.03994 -14.83005 -14.64151 -14.49241 -14.37602 -13.97354 -13.90757 -13.74071 -13.71537 -13.26699 -13.15945 -13.11887 -12.95888 -12.70499 -12.33683 -12.19728 -12.13809 -11.87163 -11.61773 -11.53358 -11.39067 -11.16384 -11.05304 -10.92262 -10.80333 -10.33152 -10.24193 -10.20797 -9.50724 -9.30033 -9.02132 -8.45792 -8.05900 -7.94610 -6.40605 -3.81273 0.74968 1.64995 2.07551 2.89072 3.08974 3.17502 3.28042 3.35530 3.49503 3.92239 4.12308 4.22336 4.35519 4.47656 4.65856 4.77439 4.83223 4.84973 4.92220 5.00176 5.10946 5.12382 5.20834 5.21995 5.28180 5.40757 5.43239 5.49549 5.64344 5.66961 5.70253 5.75202 5.83293 5.88131 5.99770 6.01730 6.13498 6.27680 6.38518 6.46071 7.04898 7.18509 7.42258 7.56763 7.64700 8.02132 8.07895 8.62482 9.19302 9.55695 10.07026 10.77226 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026222 B = 0.001785 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.549325 B =15686.652212 C =16140.290118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.191 3.809 3 N -0.460 5.460 4 C -0.076 4.076 5 C 0.603 3.397 6 O -0.532 6.532 7 N -0.707 5.707 8 C 0.153 3.847 9 H 0.098 0.902 10 C -0.163 4.163 11 C 0.078 3.922 12 H 0.083 0.917 13 C -0.190 4.190 14 N -0.658 5.658 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.040 3.960 28 C -0.077 4.077 29 O -0.198 6.198 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.405 0.595 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.353 0.647 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.461 -23.208 6.791 30.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.017 4.017 3 N -0.190 5.190 4 C -0.196 4.196 5 C 0.388 3.612 6 O -0.409 6.409 7 N -0.359 5.359 8 C 0.049 3.951 9 H 0.116 0.884 10 C -0.221 4.221 11 C -0.033 4.033 12 H 0.101 0.899 13 C -0.249 4.249 14 N -0.291 5.291 15 C -0.082 4.082 16 C 0.227 3.773 17 O -0.466 6.466 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.016 4.016 28 C -0.133 4.133 29 O -0.086 6.086 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.242 0.758 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.174 0.826 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.894 -23.285 6.877 29.578 hybrid contribution -0.847 0.875 -0.165 1.229 sum -17.740 -22.410 6.712 29.359 Atomic orbital electron populations 1.20313 0.80806 1.05364 1.04971 1.26206 0.96490 0.78250 1.00798 1.70725 1.00730 1.30004 1.17565 1.21534 0.92180 0.92345 1.13527 1.16662 0.86084 0.81966 0.76448 1.90799 1.24168 1.75182 1.50769 1.46010 1.10914 1.05191 1.73814 1.20955 0.87174 0.89114 0.97863 0.88351 1.22180 1.02101 1.02418 0.95410 1.21709 0.89434 0.92312 0.99859 0.89905 1.22619 0.98970 1.01587 1.01692 1.60023 1.40710 1.20168 1.08162 1.21707 0.97039 0.92929 0.96483 1.19797 0.88514 0.83666 0.85355 1.90528 1.45774 1.73952 1.36370 1.41867 1.24412 1.24670 1.29153 1.19761 1.02283 1.05792 1.14923 0.87839 1.25266 0.98822 0.98271 0.95663 1.69619 1.35639 1.31178 1.17921 0.85799 0.80781 0.79431 0.78332 1.19207 1.20754 1.20807 1.23766 0.83827 0.94564 0.99426 1.20620 0.90204 0.97730 1.04766 1.84328 1.16428 1.37964 1.69849 0.88681 0.89178 0.87837 0.75764 0.92525 0.89848 0.92828 0.91628 0.92313 0.91926 0.82640 0.89545 0.93723 0.77475 0.91949 0.88946 0.90132 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.01 0.38 0.18 16 2 C 0.19 1.61 8.30 -13.08 -0.11 1.50 16 3 N -0.46 -4.90 11.06 -7.65 -0.08 -4.99 16 4 C -0.08 -0.89 6.99 -83.02 -0.58 -1.47 16 5 C 0.60 7.80 7.78 -12.52 -0.10 7.70 16 6 O -0.53 -7.95 14.47 5.27 0.08 -7.88 16 7 N -0.71 -8.15 4.99 -54.88 -0.27 -8.43 16 8 C 0.15 1.92 2.63 -67.93 -0.18 1.74 16 9 H 0.10 1.46 7.58 -51.93 -0.39 1.06 16 10 C -0.16 -2.01 8.87 37.16 0.33 -1.68 16 11 C 0.08 0.96 2.64 -67.72 -0.18 0.78 16 12 H 0.08 1.01 7.80 -51.93 -0.40 0.60 16 13 C -0.19 -1.95 8.68 37.16 0.32 -1.63 16 14 N -0.66 -10.35 5.23 -108.00 -0.56 -10.92 16 15 C 0.05 0.89 5.96 -4.98 -0.03 0.86 16 16 C 0.44 10.39 7.82 -10.99 -0.09 10.31 16 17 O -0.58 -15.79 15.78 5.54 0.09 -15.70 16 18 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 23 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 C 0.04 0.41 7.44 -35.08 -0.26 0.15 16 28 C -0.08 -0.58 9.88 36.01 0.36 -0.22 16 29 O -0.20 -1.82 10.73 6.50 0.07 -1.75 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.41 4.16 6.30 -40.82 -0.26 3.91 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.13 7.13 -51.93 -0.37 0.76 16 36 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 37 H 0.06 0.67 6.55 -51.93 -0.34 0.33 16 38 H 0.06 0.51 6.29 -51.93 -0.33 0.19 16 39 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 40 H 0.35 5.71 7.39 -39.29 -0.29 5.42 16 41 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 42 H 0.04 0.69 7.44 -51.93 -0.39 0.31 16 43 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.11 1.02 6.48 -51.93 -0.34 0.68 16 LS Contribution 391.38 15.07 5.90 5.90 Total: -1.00 -33.98 391.38 -6.15 -40.13 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -6.62 Total: 15.60 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -0.38 Total: 10.19 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.26 Total: -62.64 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: 0.23 Total: -25.33 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.98 -6.15 -40.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734000226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.321 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds