Wall clock time and date at job start Tue Mar 31 2020 20:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29933 * 125.37805 * 2 1 4 4 C 1.36067 * 108.47372 * 179.97438 * 3 2 1 5 5 C 1.47425 * 126.44626 * 180.02562 * 4 3 2 6 6 O 1.21613 * 120.00006 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99743 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72398 * 7 5 4 9 9 C 1.53004 * 109.47198 * 180.27868 * 8 7 5 10 10 C 1.52997 * 109.47000 * 179.97438 * 9 8 7 11 11 N 1.46904 * 109.46983 * 179.97438 * 10 9 8 12 12 C 1.46900 * 110.99842 * 66.04719 * 11 10 9 13 13 C 1.46899 * 111.00128 * 190.00269 * 11 10 9 14 14 C 1.50703 * 109.47046 * 170.00323 * 13 11 10 15 15 O 1.21292 * 120.00219 * 359.97438 * 14 13 11 16 16 N 1.34779 * 120.00089 * 180.02562 * 14 13 11 17 17 C 1.37089 * 120.00260 * 179.97438 * 16 14 13 18 18 H 1.08008 * 120.00029 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00031 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00404 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99756 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47178 * 90.00306 * 21 19 17 23 23 H 1.48503 * 109.47010 * 209.99770 * 21 19 17 24 24 H 1.48492 * 109.47272 * 329.99854 * 21 19 17 25 25 C 1.36084 * 107.10479 * 0.26712 * 4 3 2 26 26 C 1.50708 * 126.52553 * 179.73899 * 25 4 3 27 27 O 1.34057 * 125.37580 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47001 * 89.99783 * 1 2 3 29 29 H 1.08995 * 109.47215 * 209.99768 * 1 2 3 30 30 H 1.08991 * 109.46906 * 329.99641 * 1 2 3 31 31 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 32 32 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 33 33 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 34 34 H 1.08995 * 109.46638 * 300.00121 * 9 8 7 35 35 H 1.09006 * 109.47139 * 60.00254 * 9 8 7 36 36 H 1.08995 * 109.47672 * 299.99669 * 10 9 8 37 37 H 1.09007 * 109.47288 * 60.00489 * 10 9 8 38 38 H 1.08999 * 109.47291 * 60.00141 * 12 11 10 39 39 H 1.09003 * 109.47182 * 180.02562 * 12 11 10 40 40 H 1.08997 * 109.47165 * 299.99892 * 12 11 10 41 41 H 1.08998 * 109.47091 * 289.99713 * 13 11 10 42 42 H 1.08996 * 109.47059 * 50.00124 * 13 11 10 43 43 H 0.97003 * 119.99243 * 359.97438 * 16 14 13 44 44 H 0.96997 * 120.00472 * 179.97438 * 20 19 17 45 45 H 1.08994 * 109.46849 * 89.99572 * 26 25 4 46 46 H 1.08994 * 109.46966 * 209.99933 * 26 25 4 47 47 H 1.08999 * 109.46502 * 329.99791 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5438 0.0013 6 8 5.8605 1.0617 0.0013 7 7 4.5879 2.8825 0.0020 8 6 5.7632 3.7569 0.0088 9 6 5.3114 5.2187 0.0152 10 6 6.5389 6.1319 0.0230 11 7 6.1050 7.5354 0.0284 12 6 5.4141 7.8679 1.2814 13 6 7.2405 8.4384 -0.2023 14 6 6.7307 9.8374 -0.4343 15 8 5.5387 10.0603 -0.4104 16 7 7.5992 10.8408 -0.6695 17 6 7.1355 12.1134 -0.8811 18 1 6.0740 12.3121 -0.8589 19 6 8.0309 13.1480 -1.1230 20 7 9.3224 12.9065 -1.1495 21 14 7.3989 14.8822 -1.4106 22 1 7.3075 15.5974 -0.1124 23 1 8.3326 15.6065 -2.3100 24 1 6.0544 14.8214 -2.0381 25 6 3.5660 -0.6971 -0.0051 26 6 4.7802 -1.5898 -0.0123 27 8 2.2832 -1.0931 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.6973 3.2670 0.0024 32 1 6.3596 3.5572 0.8992 33 1 6.3634 3.5660 -0.8808 34 1 4.7150 5.4184 -0.8751 35 1 4.7113 5.4097 0.9049 36 1 7.1348 5.9321 0.9134 37 1 7.1394 5.9411 -0.8666 38 1 6.0890 7.7075 2.1222 39 1 5.1032 8.9124 1.2588 40 1 4.5370 7.2305 1.3929 41 1 7.8944 8.4300 0.6697 42 1 7.7979 8.1049 -1.0776 43 1 8.5525 10.6624 -0.6890 44 1 9.9475 13.6286 -1.3188 45 1 5.0758 -1.8092 1.0136 46 1 4.5442 -2.5198 -0.5293 47 1 5.5986 -1.0857 -0.5264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752082766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:38 Heat of formation + Delta-G solvation = -80.222140 kcal Electronic energy + Delta-G solvation = -27783.957016 eV Core-core repulsion = 23581.287199 eV Total energy + Delta-G solvation = -4202.669817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.52947 -40.69537 -40.34276 -38.28645 -36.37592 -36.01047 -35.76407 -34.07222 -33.27813 -32.62290 -30.95854 -29.40022 -28.12131 -27.09728 -26.35774 -24.63300 -23.60578 -22.37417 -22.11279 -21.23337 -20.95881 -19.84065 -18.98711 -18.16214 -17.85112 -17.14109 -16.96732 -16.86559 -16.55466 -16.41494 -16.17660 -15.67941 -15.44784 -15.19631 -15.10527 -14.91914 -14.77592 -14.38229 -14.30135 -13.74194 -13.59472 -13.52986 -13.47302 -13.36792 -13.19754 -13.02176 -12.84005 -12.72146 -12.51385 -12.39331 -12.37745 -12.32265 -12.11323 -11.91530 -11.66110 -11.44533 -11.28049 -10.27778 -10.25187 -9.98437 -9.78372 -9.18560 -8.45076 -5.93632 -0.03115 0.89765 1.38684 1.42063 1.42329 1.55074 1.99341 2.07511 2.14475 2.29934 2.78352 2.89301 3.21841 3.44163 3.53996 3.66210 3.95117 4.03274 4.12957 4.13913 4.30207 4.32906 4.40818 4.49664 4.54783 4.55975 4.61081 4.61438 4.65080 4.65209 4.73970 4.76473 4.79767 4.88805 5.04004 5.10466 5.17800 5.21930 5.26728 5.36275 5.42527 5.89979 6.08687 6.22093 6.25369 6.53099 6.62736 7.01225 7.14821 7.58594 8.14705 8.72338 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027896 B = 0.001492 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.475183 B =18767.751999 C =19504.180067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.198 3.802 3 N -0.486 5.486 4 C -0.106 4.106 5 C 0.599 3.401 6 O -0.560 6.560 7 N -0.706 5.706 8 C 0.128 3.872 9 C -0.115 4.115 10 C 0.060 3.940 11 N -0.539 5.539 12 C 0.025 3.975 13 C 0.057 3.943 14 C 0.441 3.559 15 O -0.614 6.614 16 N -0.575 5.575 17 C -0.333 4.333 18 H 0.079 0.921 19 C -0.013 4.013 20 N -0.921 5.921 21 Si 0.993 3.007 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.274 1.274 25 C 0.041 3.959 26 C -0.074 4.074 27 O -0.199 6.199 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.414 0.586 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.029 0.971 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.655 -30.945 3.837 33.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.011 4.011 3 N -0.217 5.217 4 C -0.225 4.225 5 C 0.385 3.615 6 O -0.440 6.440 7 N -0.356 5.356 8 C 0.004 3.996 9 C -0.153 4.153 10 C -0.068 4.068 11 N -0.263 5.263 12 C -0.123 4.123 13 C -0.074 4.074 14 C 0.228 3.772 15 O -0.500 6.500 16 N -0.213 5.213 17 C -0.462 4.462 18 H 0.097 0.903 19 C -0.213 4.213 20 N -0.562 5.562 21 Si 0.817 3.183 22 H -0.197 1.197 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.016 4.016 26 C -0.130 4.130 27 O -0.086 6.086 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.251 0.749 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.128 0.872 43 H 0.230 0.770 44 H 0.086 0.914 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.040 -30.296 3.432 32.781 hybrid contribution 0.768 0.581 0.463 1.069 sum -11.272 -29.715 3.895 32.018 Atomic orbital electron populations 1.20627 0.77496 1.06860 1.06483 1.27232 0.97985 0.77485 0.98398 1.70721 1.00623 1.31131 1.19199 1.21478 0.92334 0.92969 1.15736 1.16861 0.86243 0.82251 0.76099 1.90764 1.25145 1.75697 1.52392 1.45772 1.11445 1.05039 1.73342 1.21319 0.87149 0.88388 1.02715 1.21628 0.98382 0.91578 1.03736 1.22070 0.96634 0.85893 1.02224 1.61493 1.25682 1.02666 1.36462 1.22457 0.98731 1.02469 0.88641 1.21744 0.92786 0.89886 1.02988 1.20803 0.86576 0.87517 0.82268 1.90459 1.17521 1.84850 1.57204 1.41941 1.09018 1.07183 1.63151 1.19661 0.94001 0.85064 1.47492 0.90322 1.26026 0.95116 1.03614 0.96539 1.69670 1.01838 1.35104 1.49593 0.84929 0.77966 0.76990 0.78448 1.19655 1.19584 1.19834 1.24191 0.84760 0.94463 0.98206 1.20685 0.88699 0.98070 1.05587 1.84364 1.16187 1.38237 1.69861 0.86987 0.86951 0.87018 0.74937 0.91034 0.91064 0.90771 0.90684 0.93341 0.89528 0.95290 0.92768 0.90064 0.91484 0.87190 0.77050 0.91354 0.87803 0.87726 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 71.24 0.75 0.49 16 2 C 0.20 2.96 8.30 88.39 0.73 3.69 16 3 N -0.49 -9.85 11.06 -293.02 -3.24 -13.09 16 4 C -0.11 -2.34 6.99 40.41 0.28 -2.05 16 5 C 0.60 14.30 7.81 86.66 0.68 14.98 16 6 O -0.56 -15.34 14.81 -4.07 -0.06 -15.40 16 7 N -0.71 -14.48 5.55 -466.35 -2.59 -17.07 16 8 C 0.13 2.43 5.67 86.38 0.49 2.92 16 9 C -0.12 -2.26 5.25 30.59 0.16 -2.10 16 10 C 0.06 1.35 4.96 86.30 0.43 1.78 16 11 N -0.54 -17.18 4.50 -927.05 -4.17 -21.35 16 12 C 0.02 0.79 8.96 127.69 1.14 1.93 16 13 C 0.06 1.99 5.45 85.56 0.47 2.45 16 14 C 0.44 21.19 7.47 87.66 0.66 21.84 16 15 O -0.61 -34.10 13.91 -3.07 -0.04 -34.14 16 16 N -0.58 -29.83 5.29 -306.98 -1.62 -31.45 16 17 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 18 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 19 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 20 N -0.92 -50.05 13.05 21.66 0.28 -49.77 16 21 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 C 0.04 0.74 7.44 25.19 0.19 0.93 16 26 C -0.07 -0.92 9.87 71.24 0.70 -0.22 16 27 O -0.20 -3.22 10.73 0.33 0.00 -3.22 16 28 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.41 7.79 8.20 -92.71 -0.76 7.03 16 32 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.44 6.55 -2.38 -0.02 1.42 16 36 H 0.05 0.99 8.12 -2.39 -0.02 0.97 16 37 H 0.09 1.81 7.93 -2.38 -0.02 1.79 16 38 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.05 2.19 5.83 -2.39 -0.01 2.17 16 40 H 0.08 2.19 6.47 -2.39 -0.02 2.17 16 41 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 42 H 0.11 3.36 7.93 -2.39 -0.02 3.34 16 43 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 44 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.10 1.56 6.49 -2.39 -0.02 1.54 16 Total: -1.00 -75.84 395.93 -1.93 -77.76 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.48 Total: 34.27 kcal Atomic # 6 Polarization: 20.19 SS G_CDS: 7.96 Total: 28.15 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -11.34 Total: -132.73 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -0.10 Total: -52.76 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -75.84 -1.93 -77.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752082766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.457 kcal (2) G-P(sol) polarization free energy of solvation -75.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds