Wall clock time and date at job start Tue Mar 31 2020 22:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.46971 * 2 1 4 4 O 1.33494 * 126.82732 * 270.02381 * 3 2 1 5 5 N 1.20659 * 113.15902 * 179.97438 * 4 3 2 6 6 C 1.30017 * 112.29778 * 0.02562 * 5 4 3 7 7 C 1.37365 * 126.83349 * 90.02100 * 3 2 1 8 8 C 1.47400 * 128.55970 * 0.02562 * 7 3 2 9 9 O 1.21607 * 120.00367 * 359.97438 * 8 7 3 10 10 N 1.34779 * 119.99629 * 180.02562 * 8 7 3 11 11 C 1.46495 * 119.99847 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47039 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.47541 * 294.99682 * 12 11 10 14 14 C 1.53003 * 109.47211 * 174.99887 * 12 11 10 15 15 C 1.53000 * 109.47089 * 175.37674 * 14 12 11 16 16 N 1.46901 * 109.47157 * 54.99747 * 12 11 10 17 17 C 1.46901 * 110.99909 * 62.88691 * 16 12 11 18 18 C 1.50700 * 109.47165 * 185.63475 * 17 16 12 19 19 O 1.21290 * 119.99846 * 0.02562 * 18 17 16 20 20 N 1.34773 * 119.99791 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00030 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99534 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00087 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00010 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99928 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47170 * 59.99799 * 25 23 21 27 27 H 1.48497 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47132 * 300.00156 * 25 23 21 29 29 H 1.09006 * 109.47262 * 60.00714 * 1 2 3 30 30 H 1.09010 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47616 * 300.00061 * 1 2 3 32 32 H 1.08992 * 109.47675 * 239.99456 * 2 1 3 33 33 H 1.09002 * 109.46798 * 119.99126 * 2 1 3 34 34 H 1.08006 * 127.32919 * 180.02562 * 6 5 4 35 35 H 0.97003 * 119.99591 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.47453 * 299.99374 * 11 10 8 37 37 H 1.08998 * 109.47320 * 60.00163 * 11 10 8 38 38 H 1.09001 * 109.46877 * 295.37780 * 14 12 11 39 39 H 1.09000 * 109.47145 * 55.37894 * 14 12 11 40 40 H 1.08999 * 109.47286 * 58.73082 * 15 14 12 41 41 H 1.08998 * 109.46817 * 178.72874 * 15 14 12 42 42 H 1.08999 * 109.47178 * 298.72909 * 15 14 12 43 43 H 1.00904 * 110.99915 * 186.83811 * 16 12 11 44 44 H 1.08999 * 109.46902 * 305.63813 * 17 16 12 45 45 H 1.09004 * 109.47200 * 65.63623 * 17 16 12 46 46 H 0.97000 * 120.00351 * 0.02562 * 20 18 17 47 47 H 0.96998 * 119.99618 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2985 2.1753 -1.0685 5 7 2.6890 3.2808 -0.7834 6 6 2.7546 3.4646 0.5020 7 6 2.3071 2.1971 1.0994 8 6 2.1842 1.8462 2.5258 9 8 1.7936 0.7408 2.8487 10 7 2.5038 2.7511 3.4722 11 6 2.3822 2.4023 4.8898 12 6 2.8045 3.5971 5.7471 13 1 3.8638 3.8007 5.5901 14 6 2.5600 3.2776 7.2232 15 6 3.0881 4.4244 8.0875 16 7 2.0173 4.7769 5.3645 17 6 0.5878 4.5638 5.6273 18 6 -0.2003 5.7338 5.0972 19 8 0.3725 6.6544 4.5535 20 7 -1.5416 5.7568 5.2263 21 6 -2.2587 6.8209 4.7436 22 1 -1.7487 7.6407 4.2595 23 6 -3.6415 6.8448 4.8773 24 7 -4.2620 5.8476 5.4668 25 14 -4.6186 8.2944 4.2189 26 1 -4.3974 8.4169 2.7556 27 1 -6.0636 8.0795 4.4853 28 1 -4.1714 9.5398 4.8930 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8898 33 1 1.8932 -0.5137 0.8901 34 1 3.0699 4.3579 1.0207 35 1 2.8150 3.6330 3.2146 36 1 1.3473 2.1426 5.1127 37 1 3.0261 1.5512 5.1111 38 1 1.4908 3.1549 7.3961 39 1 3.0787 2.3558 7.4862 40 1 2.5854 5.3506 7.8090 41 1 2.8936 4.2071 9.1378 42 1 4.1614 4.5324 7.9316 43 1 2.3524 5.6037 5.8361 44 1 0.2596 3.6502 5.1317 45 1 0.4254 4.4731 6.7013 46 1 -1.9997 5.0204 5.6608 47 1 -5.2274 5.8642 5.5597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753489424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:51 Heat of formation + Delta-G solvation = -46.116262 kcal Electronic energy + Delta-G solvation = -29744.852251 eV Core-core repulsion = 25543.661376 eV Total energy + Delta-G solvation = -4201.190875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.97576 -40.85255 -40.14456 -38.63437 -35.97168 -35.73198 -35.23509 -34.51739 -33.30327 -32.74677 -31.41950 -29.82493 -28.18404 -26.30792 -25.78506 -24.98400 -24.08710 -22.33476 -21.81133 -21.27299 -20.51414 -19.86778 -18.95295 -18.75523 -18.30920 -17.50688 -17.07595 -16.95970 -16.50545 -16.16579 -15.93298 -15.81576 -15.63297 -15.37700 -15.19529 -14.85319 -14.60538 -14.52550 -14.27754 -14.03143 -13.59369 -13.52409 -13.49344 -13.15087 -12.90326 -12.88238 -12.72661 -12.49449 -12.43649 -12.27843 -12.14478 -11.88079 -11.82492 -11.65108 -11.49131 -11.47439 -11.17428 -10.56845 -10.33531 -10.00978 -9.99440 -9.33079 -8.46694 -5.95284 0.01122 0.74658 1.38380 1.40190 1.50814 1.73508 2.06771 2.13362 2.24543 2.28928 2.94596 3.20760 3.23809 3.28540 3.54305 3.58308 3.73900 3.97370 4.06519 4.17901 4.19569 4.25691 4.29533 4.36804 4.38199 4.48626 4.55000 4.59690 4.71693 4.77413 4.81684 4.83966 4.94727 4.95471 5.09820 5.13699 5.26889 5.28873 5.39570 5.40170 5.43363 5.88360 6.09032 6.41151 6.51817 6.59915 7.10642 7.12846 7.15922 7.57237 8.12194 8.70549 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007769 B = 0.003532 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3603.099066 B = 7926.631338 C =10140.392618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.054 3.946 4 O 0.087 5.913 5 N -0.378 5.378 6 C 0.032 3.968 7 C -0.281 4.281 8 C 0.594 3.406 9 O -0.566 6.566 10 N -0.697 5.697 11 C 0.127 3.873 12 C 0.082 3.918 13 H 0.114 0.886 14 C -0.156 4.156 15 C -0.152 4.152 16 N -0.665 5.665 17 C 0.064 3.936 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.576 5.576 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.990 3.010 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.036 0.964 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.221 0.779 35 H 0.414 0.586 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.352 0.648 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.394 0.606 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.247 -13.016 -2.118 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.010 4.010 4 O 0.030 5.970 5 N -0.085 5.085 6 C -0.151 4.151 7 C -0.289 4.289 8 C 0.381 3.619 9 O -0.447 6.447 10 N -0.348 5.348 11 C 0.004 3.996 12 C -0.028 4.028 13 H 0.131 0.869 14 C -0.195 4.195 15 C -0.209 4.209 16 N -0.298 5.298 17 C -0.069 4.069 18 C 0.227 3.773 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.195 1.195 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.055 0.945 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.238 0.762 35 H 0.251 0.749 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.173 0.827 44 H 0.109 0.891 45 H 0.085 0.915 46 H 0.227 0.773 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.374 -12.629 -3.933 20.281 hybrid contribution -1.062 0.909 1.630 2.147 sum 14.312 -11.720 -2.303 18.641 Atomic orbital electron populations 1.21711 0.92811 1.04026 1.01632 1.20502 0.97070 0.84114 1.06586 1.25415 0.93905 0.96898 0.84804 1.84553 1.61425 1.17489 1.33544 1.73642 1.17652 0.98949 1.18235 1.26797 0.99462 0.99619 0.89217 1.22157 1.15320 0.96000 0.95409 1.16890 0.77077 0.84270 0.83627 1.90748 1.48562 1.22691 1.82707 1.45585 1.66366 1.16806 1.06004 1.21529 1.01624 0.97464 0.79031 1.21980 0.99030 0.88976 0.92765 0.86860 1.22165 1.02127 1.00594 0.94641 1.21747 1.01735 0.97522 0.99901 1.60155 1.00385 1.05776 1.63508 1.21507 0.89797 0.95929 0.99625 1.20888 0.82563 0.89747 0.84056 1.90484 1.70272 1.40624 1.48967 1.41950 1.05753 1.20799 1.52843 1.19617 0.89893 1.00292 1.36426 0.90258 1.26004 0.97249 1.00841 0.97122 1.69669 1.10578 1.32532 1.43449 0.85035 0.77130 0.77896 0.78577 1.19926 1.19561 1.19504 0.91943 0.88845 0.94454 0.86194 0.87422 0.76229 0.74885 0.92728 0.89474 0.92147 0.89223 0.94132 0.91976 0.91154 0.82739 0.89123 0.91495 0.77297 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.89 71.98 0.71 -1.92 16 2 C -0.04 -0.78 6.05 29.85 0.18 -0.60 16 3 C 0.05 1.26 6.80 25.48 0.17 1.44 16 4 O 0.09 2.16 11.06 76.98 0.85 3.01 16 5 N -0.38 -10.14 12.01 -54.20 -0.65 -10.79 16 6 C 0.03 0.77 11.95 87.29 1.04 1.81 16 7 C -0.28 -7.18 6.47 -18.74 -0.12 -7.30 16 8 C 0.59 16.07 7.81 86.66 0.68 16.75 16 9 O -0.57 -17.56 15.24 -4.05 -0.06 -17.62 16 10 N -0.70 -16.13 5.38 -466.41 -2.51 -18.64 16 11 C 0.13 2.62 4.76 86.38 0.41 3.03 16 12 C 0.08 1.47 2.70 44.92 0.12 1.59 16 13 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 14 C -0.16 -2.46 5.10 30.60 0.16 -2.30 16 15 C -0.15 -2.37 9.70 71.98 0.70 -1.67 16 16 N -0.67 -17.21 5.32 -495.55 -2.64 -19.84 16 17 C 0.06 2.05 5.31 85.56 0.45 2.50 16 18 C 0.44 20.25 7.83 87.66 0.69 20.94 16 19 O -0.62 -32.67 15.90 -3.06 -0.05 -32.71 16 20 N -0.58 -29.43 5.29 -306.99 -1.62 -31.05 16 21 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 25 Si 0.99 43.20 29.55 68.60 2.03 45.23 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 29 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.11 2.07 6.78 -2.39 -0.02 2.05 16 34 H 0.22 4.20 7.88 -2.91 -0.02 4.18 16 35 H 0.41 9.03 7.50 -92.71 -0.70 8.33 16 36 H 0.05 1.33 6.61 -2.39 -0.02 1.31 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.12 6.23 -2.39 -0.01 1.10 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 0.77 6.87 -2.39 -0.02 0.76 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.35 9.45 7.29 -89.69 -0.65 8.79 16 44 H 0.09 2.88 6.22 -2.39 -0.01 2.87 16 45 H 0.07 1.93 6.48 -2.38 -0.02 1.91 16 46 H 0.39 19.40 7.90 -92.71 -0.73 18.67 16 47 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -71.22 392.19 1.06 -70.16 By element: Atomic # 1 Polarization: 47.16 SS G_CDS: -1.04 Total: 46.12 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 6.47 Total: 16.00 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -7.14 Total: -130.18 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: 0.74 Total: -47.32 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.22 1.06 -70.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753489424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.041 kcal (2) G-P(sol) polarization free energy of solvation -71.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds