Wall clock time and date at job start Tue Mar 31 2020 22:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47417 * 2 1 4 4 O 1.33490 * 126.82753 * 269.97861 * 3 2 1 5 5 N 1.20667 * 113.15869 * 180.02562 * 4 3 2 6 6 C 1.30010 * 112.29579 * 359.71694 * 5 4 3 7 7 C 1.37359 * 126.83240 * 90.00069 * 3 2 1 8 8 C 1.47401 * 128.56346 * 359.95576 * 7 3 2 9 9 O 1.21607 * 119.99906 * 0.02562 * 8 7 3 10 10 N 1.34775 * 120.00244 * 179.97438 * 8 7 3 11 11 C 1.46495 * 120.00077 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47155 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.46923 * 65.00206 * 12 11 10 14 14 C 1.52993 * 109.47538 * 185.00270 * 12 11 10 15 15 C 1.53004 * 109.47589 * 184.25924 * 14 12 11 16 16 N 1.46897 * 109.47081 * 305.00579 * 12 11 10 17 17 C 1.46906 * 111.00071 * 305.54264 * 16 12 11 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 12 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16 21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47045 * 89.99551 * 25 23 21 27 27 H 1.48502 * 109.47232 * 209.99530 * 25 23 21 28 28 H 1.48502 * 109.46873 * 329.99302 * 25 23 21 29 29 H 1.08997 * 109.47462 * 59.99862 * 1 2 3 30 30 H 1.09001 * 109.47322 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46972 * 299.99887 * 1 2 3 32 32 H 1.09003 * 109.47273 * 239.99719 * 2 1 3 33 33 H 1.09007 * 109.47504 * 120.00054 * 2 1 3 34 34 H 1.08004 * 127.33382 * 180.30680 * 6 5 4 35 35 H 0.97005 * 119.99383 * 0.02562 * 10 8 7 36 36 H 1.09003 * 109.47236 * 60.00581 * 11 10 8 37 37 H 1.08997 * 109.47325 * 300.00596 * 11 10 8 38 38 H 1.09008 * 109.47225 * 304.26062 * 14 12 11 39 39 H 1.09003 * 109.47327 * 64.25520 * 14 12 11 40 40 H 1.08995 * 109.46997 * 294.73660 * 15 14 12 41 41 H 1.08998 * 109.46846 * 54.73714 * 15 14 12 42 42 H 1.09001 * 109.46804 * 174.73220 * 15 14 12 43 43 H 1.00895 * 111.00401 * 69.50011 * 16 12 11 44 44 H 1.08995 * 109.46837 * 63.46295 * 17 16 12 45 45 H 1.08999 * 109.46857 * 303.46158 * 17 16 12 46 46 H 0.96996 * 119.99860 * 0.02562 * 20 18 17 47 47 H 0.97009 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2995 2.1750 -1.0685 5 7 2.6907 3.2803 -0.7834 6 6 2.7501 3.4662 0.5020 7 6 2.3069 2.1971 1.0994 8 6 2.1822 1.8470 2.5258 9 8 1.7909 0.7417 2.8486 10 7 2.5027 2.7514 3.4722 11 6 2.3793 2.4032 4.8898 12 6 2.8020 3.5979 5.7471 13 1 2.1055 4.4218 5.5908 14 6 2.7927 3.1953 7.2231 15 6 3.1119 4.4170 8.0871 16 7 4.1553 4.0213 5.3636 17 6 5.0989 2.8977 5.4359 18 6 6.4884 3.3873 5.1189 19 8 6.6746 4.5573 4.8589 20 7 7.5252 2.5263 5.1304 21 6 8.7892 2.9716 4.8415 22 1 8.9542 4.0124 4.6052 23 6 9.8581 2.0839 4.8528 24 7 9.6574 0.8175 5.1409 25 14 11.5806 2.6907 4.4600 26 1 12.2499 3.1253 5.7123 27 1 12.3620 1.5927 3.8363 28 1 11.4990 3.8366 3.5189 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0605 4.3611 1.0208 35 1 2.8151 3.6329 3.2146 36 1 3.0215 1.5509 5.1119 37 1 1.3437 2.1454 5.1118 38 1 1.8082 2.8099 7.4884 39 1 3.5431 2.4234 7.3939 40 1 4.1319 4.7459 7.8886 41 1 2.4175 5.2224 7.8482 42 1 3.0137 4.1530 9.1401 43 1 4.1573 4.4366 4.4440 44 1 4.8096 2.1334 4.7146 45 1 5.0831 2.4741 6.4401 46 1 7.3770 1.5915 5.3423 47 1 10.4037 0.1978 5.1491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753489425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:55 Heat of formation + Delta-G solvation = -19.758150 kcal Electronic energy + Delta-G solvation = -29692.865676 eV Core-core repulsion = 25492.817775 eV Total energy + Delta-G solvation = -4200.047901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.14221 -40.02170 -38.59435 -37.31706 -35.00569 -34.33404 -33.95606 -33.61230 -32.02123 -31.20517 -30.63902 -28.74998 -26.70438 -25.22364 -24.28320 -24.24088 -23.25473 -21.56340 -20.77012 -20.14921 -19.10738 -18.26663 -17.93568 -17.92171 -16.94220 -16.69257 -16.11239 -15.58443 -15.29760 -15.10387 -14.73348 -14.51069 -14.34113 -14.09534 -13.90935 -13.84290 -13.68269 -13.49239 -13.24423 -12.89486 -12.73345 -12.20900 -12.16542 -11.95664 -11.83600 -11.70263 -11.48939 -11.32613 -11.20307 -11.05305 -10.90993 -10.64457 -10.62033 -10.40720 -10.27403 -10.23072 -9.73822 -9.52191 -9.28560 -8.53934 -8.13121 -7.97713 -6.42909 -3.83904 0.82514 1.57461 2.50459 2.94576 3.01299 3.16791 3.25618 3.31170 3.88315 3.96627 4.04260 4.06825 4.28344 4.33325 4.56932 4.66859 4.81002 4.85901 4.91328 5.04388 5.06748 5.16277 5.24079 5.30832 5.37876 5.46881 5.49795 5.53704 5.57807 5.71678 5.73183 5.76339 5.85280 5.87885 5.94541 6.04817 6.14616 6.20501 6.27652 6.51292 7.08035 7.17415 7.48604 7.53771 7.90510 7.95670 8.04419 8.59364 9.16436 9.52740 10.03820 10.74682 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008458 B = 0.003292 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.546041 B = 8504.605881 C =10567.525287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C 0.055 3.945 4 O 0.092 5.908 5 N -0.352 5.352 6 C 0.026 3.974 7 C -0.266 4.266 8 C 0.602 3.398 9 O -0.531 6.531 10 N -0.719 5.719 11 C 0.081 3.919 12 C 0.076 3.924 13 H 0.089 0.911 14 C -0.113 4.113 15 C -0.142 4.142 16 N -0.652 5.652 17 C 0.043 3.957 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.201 0.799 35 H 0.399 0.601 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.343 0.657 44 H 0.046 0.954 45 H 0.090 0.910 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.134 -1.080 -4.598 20.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.010 4.010 4 O 0.033 5.967 5 N -0.057 5.057 6 C -0.158 4.158 7 C -0.273 4.273 8 C 0.388 3.612 9 O -0.409 6.409 10 N -0.371 5.371 11 C -0.044 4.044 12 C -0.035 4.035 13 H 0.108 0.892 14 C -0.151 4.151 15 C -0.199 4.199 16 N -0.284 5.284 17 C -0.089 4.089 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.133 0.867 34 H 0.218 0.782 35 H 0.234 0.766 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.163 0.837 44 H 0.064 0.936 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.707 -0.252 -4.978 20.327 hybrid contribution 0.795 -0.584 -0.157 0.999 sum -18.912 -0.836 -5.135 19.614 Atomic orbital electron populations 1.21702 0.92843 1.03076 1.02525 1.20415 0.97175 0.85472 1.05815 1.24927 0.94831 0.96052 0.85172 1.84591 1.61119 1.17676 1.33331 1.73672 1.16110 0.98417 1.17516 1.26416 1.00465 0.99247 0.89626 1.22044 1.14502 0.95478 0.95278 1.16723 0.77127 0.84255 0.83059 1.90789 1.46721 1.21181 1.82239 1.45720 1.68034 1.16881 1.06474 1.22259 1.02526 1.00186 0.79424 1.22005 0.91097 0.95223 0.95166 0.89246 1.21504 1.01589 0.99245 0.92791 1.21621 1.03265 0.97051 0.97986 1.60190 1.04174 1.29667 1.34328 1.21782 0.92506 0.92652 1.01968 1.19783 0.85719 0.87023 0.84864 1.90519 1.84943 1.17222 1.54117 1.41863 1.06604 1.10571 1.60901 1.19685 0.82707 0.96573 1.43966 0.87951 1.25261 1.00241 0.95024 0.97370 1.69615 1.32953 1.02752 1.48869 0.85871 0.81498 0.78275 0.78733 1.20366 1.20923 1.19430 0.92344 0.90895 0.91877 0.89039 0.86683 0.78177 0.76592 0.90520 0.90836 0.91755 0.91368 0.91014 0.93205 0.93482 0.83700 0.93561 0.89231 0.77530 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.05 -0.43 6.05 -27.89 -0.17 -0.60 16 3 C 0.05 0.59 6.80 -34.63 -0.24 0.36 16 4 O 0.09 1.08 11.06 18.66 0.21 1.28 16 5 N -0.35 -4.40 12.01 31.80 0.38 -4.02 16 6 C 0.03 0.28 11.95 -14.73 -0.18 0.10 16 7 C -0.27 -3.10 6.47 -102.89 -0.67 -3.77 16 8 C 0.60 7.55 7.81 -12.53 -0.10 7.45 16 9 O -0.53 -7.84 15.24 5.27 0.08 -7.76 16 10 N -0.72 -7.66 5.31 -61.39 -0.33 -7.98 16 11 C 0.08 0.85 4.47 -4.04 -0.02 0.84 16 12 C 0.08 0.78 2.71 -67.72 -0.18 0.60 16 13 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 14 C -0.11 -1.14 5.31 -26.73 -0.14 -1.28 16 15 C -0.14 -1.53 9.73 37.16 0.36 -1.17 16 16 N -0.65 -9.03 5.41 -107.99 -0.58 -9.61 16 17 C 0.04 0.72 5.30 -4.97 -0.03 0.69 16 18 C 0.44 10.07 7.83 -10.99 -0.09 9.99 16 19 O -0.58 -15.29 15.85 5.55 0.09 -15.20 16 20 N -0.56 -14.13 5.29 -10.97 -0.06 -14.18 16 21 C -0.30 -8.32 9.68 -14.94 -0.14 -8.47 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 25 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 1.14 6.78 -51.92 -0.35 0.79 16 34 H 0.20 1.60 7.88 -52.48 -0.41 1.19 16 35 H 0.40 3.65 6.59 -40.82 -0.27 3.38 16 36 H 0.08 0.93 6.72 -51.93 -0.35 0.58 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.07 0.75 6.28 -51.93 -0.33 0.43 16 40 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.34 4.74 7.29 -39.29 -0.29 4.45 16 44 H 0.05 0.74 6.49 -51.93 -0.34 0.40 16 45 H 0.09 1.40 6.22 -51.93 -0.32 1.08 16 46 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 392.37 15.07 5.91 5.91 Total: -1.00 -33.11 392.37 -6.61 -39.72 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -6.70 Total: 15.03 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.31 Total: 4.57 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.14 Total: -59.62 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: 0.37 Total: -21.68 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.11 -6.61 -39.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753489425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.961 kcal (2) G-P(sol) polarization free energy of solvation -33.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds