Wall clock time and date at job start Tue Mar 31 2020 22:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47417 * 2 1 4 4 O 1.33490 * 126.82753 * 269.97861 * 3 2 1 5 5 N 1.20667 * 113.15869 * 180.02562 * 4 3 2 6 6 C 1.30010 * 112.29579 * 359.71694 * 5 4 3 7 7 C 1.37359 * 126.83240 * 90.00069 * 3 2 1 8 8 C 1.47401 * 128.56346 * 359.95576 * 7 3 2 9 9 O 1.21607 * 119.99906 * 0.02562 * 8 7 3 10 10 N 1.34775 * 120.00244 * 179.97438 * 8 7 3 11 11 C 1.46495 * 120.00077 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47155 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.46923 * 65.00206 * 12 11 10 14 14 C 1.52993 * 109.47538 * 185.00270 * 12 11 10 15 15 C 1.53004 * 109.47589 * 184.25924 * 14 12 11 16 16 N 1.46897 * 109.47081 * 305.00579 * 12 11 10 17 17 C 1.46906 * 111.00071 * 305.54264 * 16 12 11 18 18 C 1.50696 * 109.47168 * 183.46222 * 17 16 12 19 19 O 1.21287 * 120.00389 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99896 * 179.72474 * 18 17 16 21 21 C 1.37094 * 120.00076 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00082 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99947 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00057 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00108 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47045 * 89.99551 * 25 23 21 27 27 H 1.48502 * 109.47232 * 209.99530 * 25 23 21 28 28 H 1.48502 * 109.46873 * 329.99302 * 25 23 21 29 29 H 1.08997 * 109.47462 * 59.99862 * 1 2 3 30 30 H 1.09001 * 109.47322 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46972 * 299.99887 * 1 2 3 32 32 H 1.09003 * 109.47273 * 239.99719 * 2 1 3 33 33 H 1.09007 * 109.47504 * 120.00054 * 2 1 3 34 34 H 1.08004 * 127.33382 * 180.30680 * 6 5 4 35 35 H 0.97005 * 119.99383 * 0.02562 * 10 8 7 36 36 H 1.09003 * 109.47236 * 60.00581 * 11 10 8 37 37 H 1.08997 * 109.47325 * 300.00596 * 11 10 8 38 38 H 1.09008 * 109.47225 * 304.26062 * 14 12 11 39 39 H 1.09003 * 109.47327 * 64.25520 * 14 12 11 40 40 H 1.08995 * 109.46997 * 294.73660 * 15 14 12 41 41 H 1.08998 * 109.46846 * 54.73714 * 15 14 12 42 42 H 1.09001 * 109.46804 * 174.73220 * 15 14 12 43 43 H 1.00895 * 111.00401 * 69.50011 * 16 12 11 44 44 H 1.08995 * 109.46837 * 63.46295 * 17 16 12 45 45 H 1.08999 * 109.46857 * 303.46158 * 17 16 12 46 46 H 0.96996 * 119.99860 * 0.02562 * 20 18 17 47 47 H 0.97009 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2995 2.1750 -1.0685 5 7 2.6907 3.2803 -0.7834 6 6 2.7501 3.4662 0.5020 7 6 2.3069 2.1971 1.0994 8 6 2.1822 1.8470 2.5258 9 8 1.7909 0.7417 2.8486 10 7 2.5027 2.7514 3.4722 11 6 2.3793 2.4032 4.8898 12 6 2.8020 3.5979 5.7471 13 1 2.1055 4.4218 5.5908 14 6 2.7927 3.1953 7.2231 15 6 3.1119 4.4170 8.0871 16 7 4.1553 4.0213 5.3636 17 6 5.0989 2.8977 5.4359 18 6 6.4884 3.3873 5.1189 19 8 6.6746 4.5573 4.8589 20 7 7.5252 2.5263 5.1304 21 6 8.7892 2.9716 4.8415 22 1 8.9542 4.0124 4.6052 23 6 9.8581 2.0839 4.8528 24 7 9.6574 0.8175 5.1409 25 14 11.5806 2.6907 4.4600 26 1 12.2499 3.1253 5.7123 27 1 12.3620 1.5927 3.8363 28 1 11.4990 3.8366 3.5189 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0605 4.3611 1.0208 35 1 2.8151 3.6329 3.2146 36 1 3.0215 1.5509 5.1119 37 1 1.3437 2.1454 5.1118 38 1 1.8082 2.8099 7.4884 39 1 3.5431 2.4234 7.3939 40 1 4.1319 4.7459 7.8886 41 1 2.4175 5.2224 7.8482 42 1 3.0137 4.1530 9.1401 43 1 4.1573 4.4366 4.4440 44 1 4.8096 2.1334 4.7146 45 1 5.0831 2.4741 6.4401 46 1 7.3770 1.5915 5.3423 47 1 10.4037 0.1978 5.1491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753489425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:55 Heat of formation + Delta-G solvation = -44.356024 kcal Electronic energy + Delta-G solvation = -29693.932320 eV Core-core repulsion = 25492.817775 eV Total energy + Delta-G solvation = -4201.114545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.02293 -41.03247 -40.14525 -38.62370 -35.98144 -35.74059 -35.25330 -34.51203 -33.35026 -32.99619 -31.43911 -29.77522 -28.14379 -26.33662 -25.82602 -25.00989 -24.10814 -22.40356 -21.85577 -21.34677 -20.52357 -19.85988 -19.16586 -18.81739 -18.32631 -17.59806 -17.08484 -17.02089 -16.59456 -16.23811 -16.01657 -15.82702 -15.53644 -15.41361 -15.09948 -14.83048 -14.64285 -14.47762 -14.37347 -13.96518 -13.76703 -13.58112 -13.47801 -13.11441 -12.92844 -12.87567 -12.65631 -12.50712 -12.42227 -12.25806 -12.13846 -11.91035 -11.78014 -11.53868 -11.52966 -11.48449 -11.25346 -10.63276 -10.34719 -10.17477 -10.01689 -9.35809 -8.47235 -5.95889 -0.05020 0.69846 1.36711 1.40377 1.52862 1.65258 2.03961 2.05699 2.10733 2.28032 2.92099 3.16613 3.20123 3.21591 3.49661 3.51906 3.71553 3.90478 4.04945 4.13233 4.21298 4.23804 4.31077 4.34361 4.39912 4.47065 4.58728 4.66894 4.69630 4.71337 4.79427 4.95309 4.96226 5.00350 5.07881 5.20662 5.25017 5.30342 5.39845 5.40649 5.59746 5.87253 6.07676 6.28482 6.39904 6.58981 6.99765 7.07333 7.12207 7.56125 8.10934 8.70168 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008458 B = 0.003292 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3309.546041 B = 8504.605881 C =10567.525287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 C 0.059 3.941 4 O 0.087 5.913 5 N -0.376 5.376 6 C 0.032 3.968 7 C -0.285 4.285 8 C 0.600 3.400 9 O -0.558 6.558 10 N -0.712 5.712 11 C 0.086 3.914 12 C 0.086 3.914 13 H 0.113 0.887 14 C -0.113 4.113 15 C -0.139 4.139 16 N -0.660 5.660 17 C 0.064 3.936 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.272 1.272 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.226 0.774 35 H 0.407 0.593 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.344 0.656 44 H 0.056 0.944 45 H 0.102 0.898 46 H 0.394 0.606 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.207 -1.219 -4.521 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 C -0.006 4.006 4 O 0.030 5.970 5 N -0.083 5.083 6 C -0.151 4.151 7 C -0.293 4.293 8 C 0.387 3.613 9 O -0.438 6.438 10 N -0.363 5.363 11 C -0.039 4.039 12 C -0.024 4.024 13 H 0.131 0.869 14 C -0.151 4.151 15 C -0.196 4.196 16 N -0.292 5.292 17 C -0.068 4.068 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.815 3.185 26 H -0.196 1.196 27 H -0.197 1.197 28 H -0.197 1.197 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.242 0.758 35 H 0.243 0.757 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.164 0.836 44 H 0.074 0.926 45 H 0.120 0.880 46 H 0.227 0.773 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.803 -0.394 -4.893 21.374 hybrid contribution 1.051 -0.511 -0.153 1.179 sum -19.752 -0.905 -5.045 20.406 Atomic orbital electron populations 1.21678 0.91714 1.04104 1.02098 1.20538 0.98021 0.84137 1.06213 1.25404 0.93600 0.96711 0.84860 1.84572 1.61298 1.17637 1.33532 1.73657 1.17365 0.99003 1.18307 1.26841 0.99274 0.99759 0.89247 1.22107 1.15784 0.96199 0.95181 1.16843 0.76808 0.84078 0.83534 1.90772 1.48138 1.22239 1.82658 1.45678 1.67312 1.16960 1.06381 1.22224 1.02946 0.99557 0.79158 1.22072 0.89233 0.95905 0.95225 0.86920 1.21538 1.02740 0.98590 0.92248 1.21575 1.01495 0.97729 0.98812 1.60169 1.05671 1.28832 1.34553 1.21532 0.89135 0.93423 1.02739 1.20861 0.87517 0.86270 0.82619 1.90488 1.86022 1.18820 1.55111 1.41954 1.06594 1.10948 1.61775 1.19651 0.84549 0.95979 1.45941 0.90222 1.26028 1.03485 0.95100 0.96710 1.69680 1.34160 1.03421 1.48969 0.84958 0.77058 0.77894 0.78633 1.19606 1.19684 1.19692 0.91484 0.89163 0.93505 0.86790 0.88027 0.75787 0.75650 0.92073 0.89532 0.89118 0.92481 0.94241 0.92067 0.92581 0.83632 0.92586 0.87962 0.77285 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 71.98 0.71 -1.14 16 2 C -0.05 -0.83 6.05 29.85 0.18 -0.65 16 3 C 0.06 1.25 6.80 25.48 0.17 1.42 16 4 O 0.09 1.98 11.06 77.00 0.85 2.83 16 5 N -0.38 -9.20 12.01 -54.20 -0.65 -9.85 16 6 C 0.03 0.67 11.95 87.29 1.04 1.71 16 7 C -0.29 -6.49 6.47 -18.74 -0.12 -6.61 16 8 C 0.60 14.58 7.81 86.66 0.68 15.26 16 9 O -0.56 -16.20 15.24 -4.05 -0.06 -16.26 16 10 N -0.71 -14.09 5.31 -466.41 -2.47 -16.56 16 11 C 0.09 1.64 4.47 86.38 0.39 2.02 16 12 C 0.09 1.55 2.71 44.91 0.12 1.67 16 13 H 0.11 1.62 8.14 -2.38 -0.02 1.61 16 14 C -0.11 -2.00 5.31 30.59 0.16 -1.83 16 15 C -0.14 -2.74 9.73 71.98 0.70 -2.04 16 16 N -0.66 -17.44 5.41 -495.58 -2.68 -20.12 16 17 C 0.06 2.07 5.30 85.55 0.45 2.53 16 18 C 0.44 20.33 7.83 87.66 0.69 21.02 16 19 O -0.62 -32.93 15.85 -3.05 -0.05 -32.98 16 20 N -0.58 -29.45 5.29 -307.00 -1.62 -31.07 16 21 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 25 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.98 6.78 -2.38 -0.02 1.96 16 34 H 0.23 3.26 7.88 -2.91 -0.02 3.24 16 35 H 0.41 6.75 6.59 -92.70 -0.61 6.14 16 36 H 0.06 1.39 6.72 -2.39 -0.02 1.38 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.06 1.15 6.28 -2.39 -0.01 1.14 16 40 H 0.04 1.03 7.88 -2.39 -0.02 1.02 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.34 9.05 7.29 -89.70 -0.65 8.39 16 44 H 0.06 1.74 6.49 -2.39 -0.02 1.72 16 45 H 0.10 3.10 6.22 -2.39 -0.01 3.09 16 46 H 0.39 19.45 7.90 -92.71 -0.73 18.72 16 47 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 Total: -1.00 -72.32 392.37 1.12 -71.20 By element: Atomic # 1 Polarization: 43.37 SS G_CDS: -0.96 Total: 42.41 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.46 Total: 15.09 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -7.15 Total: -127.49 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: 0.74 Total: -46.41 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -72.32 1.12 -71.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753489425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.845 kcal (2) G-P(sol) polarization free energy of solvation -72.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds