Wall clock time and date at job start Tue Mar 31 2020 22:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47632 * 2 1 4 4 O 1.34261 * 126.51949 * 269.97897 * 3 2 1 5 5 C 1.34052 * 108.22248 * 179.97438 * 4 3 2 6 6 N 1.29932 * 109.24429 * 359.97438 * 5 4 3 7 7 C 1.36066 * 108.47873 * 0.02562 * 6 5 4 8 8 C 1.47417 * 126.45222 * 180.02562 * 7 6 5 9 9 O 1.21613 * 120.00419 * 175.03966 * 8 7 6 10 10 N 1.34780 * 120.00082 * 355.04175 * 8 7 6 11 11 C 1.46497 * 119.99695 * 2.55047 * 10 8 7 12 12 C 1.46494 * 120.00272 * 182.54529 * 10 8 7 13 13 C 1.53002 * 109.47081 * 90.00220 * 12 10 8 14 14 N 1.46897 * 109.47518 * 180.02562 * 13 12 10 15 15 C 1.46908 * 111.00132 * 66.04099 * 14 13 12 16 16 C 1.46898 * 111.00408 * 189.99840 * 14 13 12 17 17 C 1.50692 * 109.47178 * 169.99748 * 16 14 13 18 18 O 1.21294 * 120.00488 * 359.97438 * 17 16 14 19 19 N 1.34786 * 120.00052 * 180.02562 * 17 16 14 20 20 C 1.37091 * 119.99944 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00311 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99901 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99796 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00325 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47180 * 90.00375 * 24 22 20 26 26 H 1.48498 * 109.47357 * 210.00638 * 24 22 20 27 27 H 1.48500 * 109.47198 * 330.00579 * 24 22 20 28 28 H 1.09003 * 109.46610 * 59.99801 * 1 2 3 29 29 H 1.08995 * 109.47251 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47045 * 300.00687 * 1 2 3 31 31 H 1.08997 * 109.47266 * 239.99538 * 2 1 3 32 32 H 1.09002 * 109.47349 * 120.00255 * 2 1 3 33 33 H 1.08003 * 125.37958 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.47915 * 83.88941 * 11 10 8 35 35 H 1.09006 * 109.47036 * 203.89225 * 11 10 8 36 36 H 1.09004 * 109.47027 * 323.88653 * 11 10 8 37 37 H 1.08997 * 109.47553 * 209.99908 * 12 10 8 38 38 H 1.09007 * 109.47347 * 330.00217 * 12 10 8 39 39 H 1.09006 * 109.46645 * 299.99604 * 13 12 10 40 40 H 1.08994 * 109.47392 * 59.99715 * 13 12 10 41 41 H 1.09001 * 109.46558 * 60.00238 * 15 14 13 42 42 H 1.08994 * 109.46800 * 180.02562 * 15 14 13 43 43 H 1.08998 * 109.46717 * 300.00376 * 15 14 13 44 44 H 1.09002 * 109.46953 * 289.99966 * 16 14 13 45 45 H 1.08997 * 109.46967 * 49.99626 * 16 14 13 46 46 H 0.96999 * 119.99194 * 359.97438 * 19 17 16 47 47 H 0.97003 * 120.00061 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2992 2.1739 -1.0790 5 6 2.7229 3.3741 -0.6581 6 7 2.7287 3.3948 0.6410 7 6 2.3012 2.1849 1.0935 8 6 2.1557 1.7785 2.5031 9 8 1.6765 0.6949 2.7772 10 7 2.5537 2.6079 3.4881 11 6 3.0791 3.9355 3.1601 12 6 2.4608 2.1819 4.8867 13 6 3.7611 1.4869 5.2955 14 7 3.6679 1.0591 6.6977 15 6 2.6469 0.0158 6.8631 16 6 4.9720 0.6033 7.1970 17 6 4.8980 0.4074 8.6893 18 8 3.8611 0.6264 9.2792 19 7 5.9845 -0.0102 9.3689 20 6 5.9174 -0.1880 10.7266 21 1 4.9938 0.0063 11.2516 22 6 7.0373 -0.6190 11.4271 23 7 8.1610 -0.8558 10.7882 24 14 6.9457 -0.8619 13.2769 25 1 6.5308 -2.2566 13.5731 26 1 8.2795 -0.6042 13.8767 27 1 5.9539 0.0822 13.8516 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.0135 4.1943 -1.2979 34 1 2.2509 4.6316 3.0277 35 1 3.7198 4.2831 3.9706 36 1 3.6578 3.8796 2.2381 37 1 2.2992 3.0528 5.5219 38 1 1.6270 1.4891 5.0009 39 1 3.9227 0.6159 4.6603 40 1 4.5948 2.1796 5.1813 41 1 2.9074 -0.8476 6.2509 42 1 2.5984 -0.2822 7.9104 43 1 1.6773 0.4036 6.5507 44 1 5.2343 -0.3407 6.7192 45 1 5.7310 1.3507 6.9658 46 1 6.8139 -0.1850 8.8972 47 1 8.9429 -1.1564 11.2772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753850108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:32 Heat of formation + Delta-G solvation = -52.646686 kcal Electronic energy + Delta-G solvation = -29101.848607 eV Core-core repulsion = 24900.374552 eV Total energy + Delta-G solvation = -4201.474055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.47960 -40.94275 -40.31050 -38.16491 -36.71329 -35.93225 -35.66735 -35.06395 -33.27986 -31.40052 -30.17317 -29.16678 -27.73774 -27.10879 -26.15968 -24.87541 -24.24156 -22.87578 -21.99633 -21.01334 -20.63920 -19.85344 -18.67948 -17.97902 -17.79867 -17.62896 -17.21090 -16.67498 -16.54395 -16.23868 -16.20266 -15.83482 -15.68423 -15.45592 -15.16467 -15.02190 -14.54227 -14.31546 -14.11795 -13.96331 -13.76702 -13.62197 -13.45909 -13.38454 -13.17199 -13.01171 -12.65142 -12.62322 -12.54767 -12.40294 -12.37973 -12.11801 -12.10345 -11.88692 -11.53556 -11.45569 -11.05232 -10.33905 -10.08706 -9.99661 -9.67008 -9.29611 -8.45712 -5.94223 0.02190 1.05154 1.38391 1.41956 1.52948 1.55124 1.85294 2.05314 2.16563 2.29767 2.80478 3.07060 3.20761 3.40766 3.53184 3.64198 3.89494 4.04183 4.08264 4.21157 4.22059 4.26793 4.33932 4.40242 4.45192 4.49926 4.54803 4.58023 4.60950 4.71210 4.76133 4.77862 4.89207 4.92495 4.97690 5.09896 5.16873 5.23646 5.30862 5.41989 5.50723 5.82974 6.02530 6.11973 6.20197 6.47965 6.61354 6.98603 7.13704 7.56787 8.12650 8.71801 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025440 B = 0.001887 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.368475 B =14831.744413 C =15111.532740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 C 0.046 3.954 4 O -0.198 6.198 5 C 0.194 3.806 6 N -0.483 5.483 7 C -0.098 4.098 8 C 0.589 3.411 9 O -0.561 6.561 10 N -0.598 5.598 11 C 0.076 3.924 12 C 0.125 3.875 13 C 0.052 3.948 14 N -0.528 5.528 15 C 0.029 3.971 16 C 0.058 3.942 17 C 0.443 3.557 18 O -0.612 6.612 19 N -0.574 5.574 20 C -0.331 4.331 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.273 1.273 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.305 0.695 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.089 0.911 41 H 0.021 0.979 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.113 0.887 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.933 8.273 -29.122 31.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.084 4.084 3 C -0.011 4.011 4 O -0.084 6.084 5 C -0.034 4.034 6 N -0.212 5.212 7 C -0.216 4.216 8 C 0.378 3.622 9 O -0.440 6.440 10 N -0.329 5.329 11 C -0.066 4.066 12 C 0.002 3.998 13 C -0.077 4.077 14 N -0.253 5.253 15 C -0.119 4.119 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.498 6.498 19 N -0.212 5.212 20 C -0.460 4.460 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.319 0.681 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.107 0.893 41 H 0.040 0.960 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.130 0.870 46 H 0.229 0.771 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.646 8.742 -27.851 30.744 hybrid contribution 0.685 -1.320 0.055 1.488 sum -8.961 7.422 -27.796 30.133 Atomic orbital electron populations 1.21658 0.92486 1.03681 1.01758 1.20399 0.97536 0.84894 1.05568 1.23983 0.97734 0.96072 0.83343 1.84416 1.63675 1.24712 1.35632 1.29340 0.95806 0.86984 0.91241 1.70885 1.18814 1.20382 1.11118 1.21284 1.12601 0.92939 0.94777 1.17166 0.77733 0.83621 0.83679 1.90776 1.46681 1.22954 1.83634 1.47704 1.62340 1.17265 1.05604 1.22314 0.99812 0.80947 1.03519 1.21381 0.97319 1.00813 0.80288 1.22403 0.99331 0.99084 0.86832 1.61482 1.05681 1.39631 1.18492 1.22423 0.95403 0.92249 1.01811 1.21741 0.92739 1.01297 0.91527 1.20667 0.83989 0.82135 0.90180 1.90462 1.31366 1.56635 1.71321 1.41930 1.12101 1.59433 1.07733 1.19660 0.98543 1.44010 0.83811 0.90234 1.26055 0.94197 0.96358 1.04841 1.69677 1.02008 1.46144 1.38417 0.84915 0.77838 0.78693 0.76812 1.19713 1.19533 1.19734 0.91502 0.89719 0.94034 0.87363 0.88523 0.68060 0.92181 0.90250 0.87907 0.88307 0.90896 0.95531 0.89284 0.96011 0.92041 0.90535 0.91958 0.86951 0.77065 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.89 71.98 0.71 -1.25 16 2 C -0.05 -0.72 5.88 29.85 0.18 -0.54 16 3 C 0.05 0.82 6.69 25.19 0.17 0.99 16 4 O -0.20 -2.59 10.73 0.33 0.00 -2.59 16 5 C 0.19 1.73 13.19 130.52 1.72 3.45 16 6 N -0.48 -7.85 7.85 -305.16 -2.40 -10.25 16 7 C -0.10 -2.08 6.67 40.41 0.27 -1.81 16 8 C 0.59 15.37 7.67 86.66 0.66 16.03 16 9 O -0.56 -17.28 14.43 -4.07 -0.06 -17.34 16 10 N -0.60 -13.97 2.87 -850.67 -2.44 -16.42 16 11 C 0.08 1.33 9.58 127.77 1.22 2.55 16 12 C 0.12 3.17 5.32 86.38 0.46 3.63 16 13 C 0.05 1.44 5.28 86.30 0.46 1.89 16 14 N -0.53 -18.28 4.50 -927.06 -4.17 -22.45 16 15 C 0.03 1.04 8.96 127.69 1.14 2.18 16 16 C 0.06 2.13 5.45 85.55 0.47 2.60 16 17 C 0.44 21.67 7.47 87.65 0.66 22.32 16 18 O -0.61 -34.34 13.91 -3.07 -0.04 -34.39 16 19 N -0.57 -30.11 5.29 -306.98 -1.62 -31.74 16 20 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.02 -0.81 5.50 84.93 0.47 -0.35 16 23 N -0.92 -50.37 13.05 21.66 0.28 -50.09 16 24 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 1.90 6.60 -2.39 -0.02 1.88 16 33 H 0.30 -1.05 8.06 -2.91 -0.02 -1.07 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.20 8.03 -2.38 -0.02 1.18 16 36 H 0.10 1.79 5.34 -2.39 -0.01 1.77 16 37 H 0.10 2.34 8.07 -2.39 -0.02 2.32 16 38 H 0.07 2.09 5.80 -2.38 -0.01 2.08 16 39 H 0.03 0.78 8.12 -2.38 -0.02 0.76 16 40 H 0.09 2.17 7.93 -2.39 -0.02 2.15 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.06 2.63 5.82 -2.39 -0.01 2.62 16 43 H 0.08 2.45 6.47 -2.39 -0.02 2.44 16 44 H 0.06 2.12 8.12 -2.39 -0.02 2.10 16 45 H 0.11 3.57 7.93 -2.39 -0.02 3.55 16 46 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 47 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -75.85 389.25 1.25 -74.60 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: 0.27 Total: 31.62 kcal Atomic # 6 Polarization: 24.08 SS G_CDS: 9.40 Total: 33.48 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -10.35 Total: -130.94 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -0.10 Total: -54.32 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -75.85 1.25 -74.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753850108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.957 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds