Wall clock time and date at job start Tue Mar 31 2020 22:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47078 * 2 1 4 4 N 1.34665 * 125.79995 * 265.13300 * 3 2 1 5 5 H 0.96993 * 124.85509 * 0.06586 * 4 3 2 6 6 C 1.36451 * 110.29248 * 180.29842 * 4 3 2 7 7 C 1.34480 * 108.85719 * 359.74908 * 6 4 3 8 8 C 1.36769 * 125.80144 * 85.00543 * 3 2 1 9 9 C 1.47263 * 126.94007 * 359.97438 * 8 3 2 10 10 O 1.21622 * 119.99895 * 359.71244 * 9 8 3 11 11 N 1.34779 * 119.99789 * 179.71396 * 9 8 3 12 12 C 1.46494 * 119.99921 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47283 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.47269 * 305.00317 * 13 12 11 15 15 O 1.42903 * 109.46459 * 65.00211 * 13 12 11 16 16 C 1.53001 * 109.47376 * 185.00021 * 13 12 11 17 17 N 1.46898 * 109.46893 * 180.02562 * 16 13 12 18 18 C 1.46900 * 110.99589 * 180.02562 * 17 16 13 19 19 C 1.50705 * 109.47217 * 179.97438 * 18 17 16 20 20 O 1.21294 * 119.99619 * 359.97438 * 19 18 17 21 21 N 1.34772 * 120.00394 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00100 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99991 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99700 * 179.97438 * 22 21 19 25 25 N 1.31405 * 120.00117 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99786 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47027 * 59.99780 * 26 24 22 28 28 H 1.48493 * 109.47352 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.46872 * 300.00310 * 26 24 22 30 30 H 1.08999 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47063 * 300.00058 * 1 2 3 32 32 H 1.08997 * 109.46813 * 59.99738 * 1 2 3 33 33 H 1.09007 * 109.46853 * 240.00055 * 2 1 3 34 34 H 1.08997 * 109.46813 * 120.00262 * 2 1 3 35 35 H 1.07995 * 125.56492 * 179.76993 * 6 4 3 36 36 H 1.08005 * 126.83502 * 180.02562 * 7 6 4 37 37 H 0.96999 * 119.99691 * 0.02562 * 11 9 8 38 38 H 1.09005 * 109.47040 * 60.00167 * 12 11 9 39 39 H 1.08999 * 109.47079 * 299.99869 * 12 11 9 40 40 H 0.96700 * 114.00311 * 60.00313 * 15 13 12 41 41 H 1.08999 * 109.47164 * 300.00361 * 16 13 12 42 42 H 1.08997 * 109.47124 * 60.00063 * 16 13 12 43 43 H 1.00904 * 110.99845 * 303.94958 * 17 16 13 44 44 H 1.09002 * 109.47169 * 299.99734 * 18 17 16 45 45 H 1.09003 * 109.47314 * 59.99718 * 18 17 16 46 46 H 0.97006 * 119.99935 * 359.97438 * 21 19 18 47 47 H 0.97003 * 119.99893 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3823 2.1326 -1.0883 5 1 2.3476 1.8041 -2.0002 6 6 2.7977 3.3803 -0.7242 7 6 2.7154 3.4928 0.6133 8 6 2.2080 2.2073 1.1051 9 6 1.9464 1.8364 2.5060 10 8 1.5236 0.7277 2.7727 11 7 2.1756 2.7256 3.4926 12 6 1.9149 2.3568 4.8862 13 6 2.2562 3.5368 5.7984 14 1 3.2841 3.8509 5.6169 15 8 1.3702 4.6236 5.5228 16 6 2.1033 3.1122 7.2603 17 7 2.4304 4.2453 8.1361 18 6 2.2948 3.8734 9.5508 19 6 2.6383 5.0580 10.4167 20 8 2.9644 6.1086 9.9056 21 7 2.5830 4.9502 11.7590 22 6 2.8950 6.0281 12.5467 23 1 3.1846 6.9637 12.0916 24 6 2.8375 5.9169 13.9306 25 7 2.4837 4.7790 14.4843 26 14 3.2633 7.3854 15.0039 27 1 2.3413 8.5078 14.6955 28 1 3.1244 7.0101 16.4339 29 1 4.6620 7.8057 14.7354 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.1367 4.1516 -1.3999 36 1 2.9715 4.3577 1.2074 37 1 2.5125 3.6100 3.2797 38 1 2.5310 1.4991 5.1564 39 1 0.8622 2.0994 5.0030 40 1 0.4365 4.4152 5.6632 41 1 1.0754 2.7980 7.4418 42 1 2.7790 2.2831 7.4705 43 1 3.3561 4.5967 7.9421 44 1 1.2685 3.5639 9.7483 45 1 2.9724 3.0501 9.7766 46 1 2.3218 4.1101 12.1678 47 1 2.4439 4.7013 15.4504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753909193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:03 Heat of formation + Delta-G solvation = -118.812074 kcal Electronic energy + Delta-G solvation = -27852.358429 eV Core-core repulsion = 23648.015227 eV Total energy + Delta-G solvation = -4204.343202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.19012 -40.33395 -40.06768 -38.75950 -36.30842 -35.65297 -35.27063 -34.39132 -33.25987 -32.25447 -31.02007 -29.26752 -28.47748 -26.61491 -25.02898 -24.15473 -22.93156 -22.73877 -21.49593 -21.08885 -20.41502 -19.89266 -18.56037 -18.22583 -17.45867 -17.35127 -16.96145 -16.58454 -16.38555 -16.21487 -15.94865 -15.84566 -15.25145 -15.22483 -15.15761 -14.96206 -14.67914 -14.41004 -14.32182 -13.96546 -13.93732 -13.46410 -13.35731 -13.26583 -13.18136 -13.01326 -12.93758 -12.67558 -12.42512 -12.32311 -12.11615 -11.92285 -11.85710 -11.49448 -11.11619 -10.79913 -10.31676 -10.11720 -10.00893 -9.70479 -9.27995 -9.10847 -8.45767 -5.94709 0.77291 1.40818 1.42559 1.53635 1.56482 2.06409 2.11115 2.30268 2.51467 2.60268 2.94810 3.21461 3.45879 3.61439 3.80949 3.85075 3.98541 4.11848 4.13525 4.16911 4.32173 4.35915 4.42945 4.47372 4.53920 4.55104 4.57876 4.69452 4.71901 4.75951 4.92628 4.99937 5.08468 5.09323 5.31052 5.31975 5.41389 5.51467 5.82132 5.87791 6.00605 6.09856 6.37981 6.61109 6.61877 6.72495 6.89810 7.13365 7.38097 7.57089 8.12768 8.71316 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034314 B = 0.001490 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.789584 B =18792.544280 C =19386.398537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 C 0.102 3.898 4 N -0.539 5.539 5 H 0.432 0.568 6 C -0.003 4.003 7 C -0.189 4.189 8 C -0.269 4.269 9 C 0.582 3.418 10 O -0.586 6.586 11 N -0.713 5.713 12 C 0.099 3.901 13 C 0.114 3.886 14 H 0.103 0.897 15 O -0.559 6.559 16 C 0.032 3.968 17 N -0.674 5.674 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.337 4.337 23 H 0.079 0.921 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.205 0.795 36 H 0.154 0.846 37 H 0.410 0.590 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.385 0.615 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.343 0.657 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 -10.830 -32.785 34.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.018 4.018 4 N -0.135 5.135 5 H 0.272 0.728 6 C -0.131 4.131 7 C -0.213 4.213 8 C -0.279 4.279 9 C 0.373 3.627 10 O -0.469 6.469 11 N -0.365 5.365 12 C -0.026 4.026 13 C 0.054 3.946 14 H 0.121 0.879 15 O -0.366 6.366 16 C -0.098 4.098 17 N -0.306 5.306 18 C -0.067 4.067 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.097 0.903 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.198 1.198 28 H -0.194 1.194 29 H -0.197 1.197 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.221 0.779 36 H 0.172 0.828 37 H 0.246 0.754 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.234 0.766 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.162 0.838 44 H 0.123 0.877 45 H 0.085 0.915 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.619 -10.395 -33.024 34.660 hybrid contribution 0.483 -0.259 1.032 1.169 sum -1.136 -10.653 -31.992 33.739 Atomic orbital electron populations 1.21597 0.93940 1.02465 1.01283 1.20258 0.96718 0.88836 1.04031 1.20472 0.99941 0.95095 0.86259 1.41624 1.50896 1.11929 1.09049 0.72809 1.22281 1.05921 0.88464 0.96447 1.22292 1.06863 0.97066 0.95035 1.20236 1.18028 0.97848 0.91781 1.17721 0.76293 0.83636 0.85071 1.90710 1.48498 1.22753 1.84904 1.45590 1.67531 1.17503 1.05833 1.21913 1.01991 0.97735 0.80911 1.21958 0.95280 0.86096 0.91289 0.87946 1.86597 1.21088 1.38396 1.90494 1.22651 1.02937 0.91862 0.92367 1.59958 1.35446 1.33494 1.01714 1.21549 1.03194 0.93662 0.88336 1.20915 0.82918 0.90865 0.82912 1.90499 1.54154 1.32323 1.73998 1.41926 1.60411 1.13820 1.04885 1.19649 1.44995 0.93235 0.88762 0.90348 1.26039 0.96577 1.00804 0.97780 1.69664 1.47795 1.26048 1.12557 0.84981 0.78819 0.77537 0.76943 1.19786 1.19437 1.19674 0.91061 0.94533 0.92008 0.88760 0.90320 0.77871 0.82820 0.75353 0.90721 0.91130 0.76629 0.89296 0.92740 0.83827 0.87743 0.91517 0.76955 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.90 71.98 0.71 -1.20 16 2 C -0.06 -0.86 5.79 29.85 0.17 -0.69 16 3 C 0.10 1.61 6.43 41.78 0.27 1.88 16 4 N -0.54 -4.77 5.90 -182.73 -1.08 -5.85 16 5 H 0.43 0.78 8.96 -92.71 -0.83 -0.05 16 6 C 0.00 -0.03 11.89 83.11 0.99 0.96 16 7 C -0.19 -2.75 10.56 23.62 0.25 -2.50 16 8 C -0.27 -5.33 6.29 -19.04 -0.12 -5.45 16 9 C 0.58 13.88 7.81 86.62 0.68 14.56 16 10 O -0.59 -17.18 14.74 -4.10 -0.06 -17.24 16 11 N -0.71 -13.96 5.50 -466.53 -2.57 -16.53 16 12 C 0.10 1.83 5.31 86.38 0.46 2.29 16 13 C 0.11 2.17 3.21 30.60 0.10 2.27 16 14 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 15 O -0.56 -12.48 13.15 -148.98 -1.96 -14.44 16 16 C 0.03 0.66 5.35 86.30 0.46 1.13 16 17 N -0.67 -20.83 5.99 -517.93 -3.10 -23.93 16 18 C 0.06 2.21 6.17 85.56 0.53 2.73 16 19 C 0.44 21.02 7.82 87.66 0.69 21.70 16 20 O -0.62 -35.20 15.78 -3.07 -0.05 -35.25 16 21 N -0.57 -29.74 5.29 -306.98 -1.62 -31.36 16 22 C -0.34 -19.38 9.68 84.04 0.81 -18.57 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -49.93 13.05 21.66 0.28 -49.65 16 26 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 29 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.04 0.73 7.95 -2.39 -0.02 0.71 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.08 1.54 6.75 -2.39 -0.02 1.53 16 35 H 0.20 0.36 8.06 -2.91 -0.02 0.34 16 36 H 0.15 1.83 7.70 -2.91 -0.02 1.80 16 37 H 0.41 6.99 7.59 -92.71 -0.70 6.29 16 38 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.38 6.68 9.05 -74.06 -0.67 6.01 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.34 11.36 8.43 -89.69 -0.76 10.61 16 44 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 45 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.40 19.46 7.90 -92.70 -0.73 18.73 16 47 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -79.30 401.23 -4.31 -83.61 By element: Atomic # 1 Polarization: 49.06 SS G_CDS: -2.64 Total: 46.42 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 6.46 Total: 18.92 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -8.09 Total: -127.32 kcal Atomic # 8 Polarization: -64.86 SS G_CDS: -2.07 Total: -66.93 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -79.30 -4.31 -83.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753909193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.201 kcal (2) G-P(sol) polarization free energy of solvation -79.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds