Wall clock time and date at job start Tue Mar 31 2020 22:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.47433 * 2 1 4 4 N 1.34662 * 125.80278 * 265.02259 * 3 2 1 5 5 H 0.97003 * 124.84775 * 359.97438 * 4 3 2 6 6 C 1.36446 * 110.30060 * 179.97438 * 4 3 2 7 7 C 1.34490 * 108.85245 * 0.02562 * 6 4 3 8 8 C 1.36767 * 125.80117 * 84.99534 * 3 2 1 9 9 C 1.47269 * 126.94379 * 359.97438 * 8 3 2 10 10 O 1.21626 * 119.99661 * 0.02562 * 9 8 3 11 11 N 1.34772 * 119.99714 * 180.02562 * 9 8 3 12 12 C 1.46499 * 119.99656 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47406 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.46692 * 60.00124 * 13 12 11 15 15 O 1.42897 * 109.47174 * 300.00399 * 13 12 11 16 16 C 1.53000 * 109.47276 * 179.97438 * 13 12 11 17 17 N 1.46899 * 109.47183 * 184.99930 * 16 13 12 18 18 C 1.46900 * 111.00335 * 180.02562 * 17 16 13 19 19 C 1.50699 * 109.47289 * 180.02562 * 18 17 16 20 20 O 1.21295 * 120.00219 * 0.02562 * 19 18 17 21 21 N 1.34771 * 119.99891 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99932 * 180.02562 * 21 19 18 23 23 H 1.07992 * 120.00109 * 359.97438 * 22 21 19 24 24 C 1.38958 * 119.99717 * 180.02562 * 22 21 19 25 25 N 1.31403 * 120.00315 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99653 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47125 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47000 * 119.99736 * 26 24 22 29 29 H 1.48498 * 109.46902 * 239.99837 * 26 24 22 30 30 H 1.09003 * 109.47014 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46797 * 300.00408 * 1 2 3 32 32 H 1.09000 * 109.46770 * 60.00213 * 1 2 3 33 33 H 1.09003 * 109.47249 * 239.99410 * 2 1 3 34 34 H 1.09000 * 109.46770 * 119.99787 * 2 1 3 35 35 H 1.07998 * 125.57228 * 179.97438 * 6 4 3 36 36 H 1.08004 * 126.82750 * 180.25911 * 7 6 4 37 37 H 0.97001 * 120.00515 * 359.97438 * 11 9 8 38 38 H 1.09006 * 109.47607 * 300.00140 * 12 11 9 39 39 H 1.09006 * 109.47326 * 59.99929 * 12 11 9 40 40 H 0.96700 * 113.99866 * 299.99622 * 15 13 12 41 41 H 1.08994 * 109.47313 * 305.00541 * 16 13 12 42 42 H 1.08999 * 109.47048 * 65.00731 * 16 13 12 43 43 H 1.00906 * 110.99493 * 56.05127 * 17 16 13 44 44 H 1.08999 * 109.46964 * 300.00133 * 18 17 16 45 45 H 1.09004 * 109.46970 * 60.00107 * 18 17 16 46 46 H 0.97000 * 120.00193 * 359.97438 * 21 19 18 47 47 H 0.97001 * 119.99973 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3844 2.1318 -1.0880 5 1 2.3524 1.8022 -1.9998 6 6 2.7924 3.3822 -0.7248 7 6 2.7089 3.4950 0.6128 8 6 2.2079 2.2073 1.1050 9 6 1.9461 1.8365 2.5060 10 8 1.5285 0.7259 2.7733 11 7 2.1693 2.7279 3.4919 12 6 1.9083 2.3592 4.8855 13 6 2.2422 3.5418 5.7971 14 1 1.6225 4.3963 5.5251 15 8 3.6208 3.8857 5.6455 16 6 1.9690 3.1570 7.2525 17 7 2.1747 4.3279 8.1155 18 6 1.9214 3.9950 9.5237 19 6 2.1414 5.2180 10.3763 20 8 2.4757 6.2641 9.8615 21 7 1.9665 5.1493 11.7109 22 6 2.1661 6.2620 12.4865 23 1 2.4638 7.1934 12.0282 24 6 1.9863 6.1910 13.8626 25 7 1.6246 5.0575 14.4204 26 14 2.2576 7.7073 14.9194 27 1 2.6565 8.8476 14.0558 28 1 1.0003 8.0436 15.6346 29 1 3.3320 7.4360 15.9079 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.1282 4.1546 -1.4008 36 1 2.9565 4.3630 1.2059 37 1 2.5027 3.6135 3.2788 38 1 0.8567 2.0965 5.0012 39 1 2.5283 1.5049 5.1576 40 1 4.2316 3.1707 5.8706 41 1 0.9403 2.8102 7.3497 42 1 2.6507 2.3609 7.5519 43 1 1.6001 5.1020 7.8175 44 1 0.8924 3.6538 9.6369 45 1 2.6030 3.2048 9.8385 46 1 1.6988 4.3128 12.1226 47 1 1.4995 5.0079 15.3810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753909195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:07 Heat of formation + Delta-G solvation = -119.169292 kcal Electronic energy + Delta-G solvation = -27851.102922 eV Core-core repulsion = 23646.744230 eV Total energy + Delta-G solvation = -4204.358692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.18940 -40.33894 -40.07175 -38.76339 -36.32195 -35.66161 -35.26039 -34.38912 -33.26456 -32.25449 -31.03075 -29.26774 -28.47897 -26.61895 -25.03072 -24.15589 -22.94621 -22.72548 -21.49375 -21.09388 -20.41831 -19.89808 -18.55894 -18.23972 -17.48110 -17.32219 -16.93033 -16.63366 -16.39274 -16.22203 -15.92141 -15.86237 -15.24448 -15.22240 -15.18428 -14.96200 -14.68383 -14.40087 -14.32350 -13.97141 -13.94571 -13.48063 -13.32628 -13.29631 -13.17985 -13.02054 -12.93734 -12.67684 -12.40173 -12.32350 -12.10850 -11.94262 -11.85639 -11.51006 -11.11661 -10.80994 -10.32197 -10.11587 -10.01032 -9.70347 -9.28275 -9.10757 -8.46452 -5.95207 0.77385 1.37279 1.42511 1.56544 1.56928 2.05821 2.11013 2.29990 2.51348 2.60364 2.94829 3.20895 3.46148 3.60015 3.81028 3.85322 3.97452 4.11312 4.13850 4.17538 4.32302 4.35633 4.42970 4.47402 4.53109 4.55074 4.57627 4.69354 4.71666 4.75779 4.92746 5.00039 5.08640 5.09326 5.30978 5.31826 5.41622 5.51306 5.82218 5.87644 6.00738 6.09728 6.37535 6.60670 6.62106 6.72690 6.89319 7.13227 7.38290 7.56758 8.12372 8.71150 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.033421 B = 0.001492 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.606954 B =18768.069035 C =19365.034344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 C 0.102 3.898 4 N -0.539 5.539 5 H 0.432 0.568 6 C -0.004 4.004 7 C -0.189 4.189 8 C -0.269 4.269 9 C 0.582 3.418 10 O -0.586 6.586 11 N -0.713 5.713 12 C 0.099 3.901 13 C 0.114 3.886 14 H 0.101 0.899 15 O -0.559 6.559 16 C 0.032 3.968 17 N -0.675 5.675 18 C 0.065 3.935 19 C 0.437 3.563 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.205 0.795 36 H 0.154 0.846 37 H 0.411 0.589 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.385 0.615 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.343 0.657 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 -11.220 -32.709 34.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.018 4.018 4 N -0.135 5.135 5 H 0.272 0.728 6 C -0.131 4.131 7 C -0.213 4.213 8 C -0.279 4.279 9 C 0.373 3.627 10 O -0.469 6.469 11 N -0.364 5.364 12 C -0.026 4.026 13 C 0.054 3.946 14 H 0.119 0.881 15 O -0.366 6.366 16 C -0.098 4.098 17 N -0.308 5.308 18 C -0.067 4.067 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.211 5.211 22 C -0.465 4.465 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.221 0.779 36 H 0.172 0.828 37 H 0.247 0.753 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.234 0.766 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.162 0.838 44 H 0.085 0.915 45 H 0.123 0.877 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.210 -10.883 -32.915 34.668 hybrid contribution -0.657 0.032 0.962 1.165 sum -0.867 -10.851 -31.952 33.756 Atomic orbital electron populations 1.21599 0.93940 1.02469 1.01280 1.20256 0.96710 0.88841 1.04039 1.20468 0.99914 0.95127 0.86259 1.41624 1.50973 1.11813 1.09083 0.72808 1.22283 1.06030 0.88350 0.96456 1.22294 1.06930 0.97012 0.95015 1.20236 1.18048 0.97827 0.91773 1.17720 0.76255 0.83671 0.85072 1.90711 1.48655 1.22623 1.84894 1.45574 1.67581 1.17473 1.05788 1.21906 1.02039 0.97710 0.80951 1.21943 0.84095 0.96650 0.91883 0.88080 1.86599 1.15510 1.44102 1.90376 1.22657 1.01432 0.93142 0.92520 1.59959 1.62270 1.08167 1.00366 1.21546 1.01517 0.94868 0.88795 1.20917 0.82632 0.91080 0.82953 1.90500 1.53416 1.33579 1.73486 1.41936 1.60842 1.12630 1.05673 1.19718 1.45558 0.91578 0.89606 0.90369 1.26042 0.96292 1.01212 0.97694 1.69674 1.47162 1.26557 1.12721 0.84861 0.78303 0.77437 0.77658 1.19842 1.19540 1.19604 0.91060 0.94525 0.92007 0.88764 0.90315 0.77872 0.82842 0.75306 0.90815 0.91029 0.76588 0.92746 0.89229 0.83817 0.91485 0.87727 0.76950 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.90 71.98 0.71 -1.19 16 2 C -0.06 -0.86 5.79 29.85 0.17 -0.69 16 3 C 0.10 1.61 6.43 41.78 0.27 1.88 16 4 N -0.54 -4.78 5.90 -182.73 -1.08 -5.86 16 5 H 0.43 0.79 8.96 -92.71 -0.83 -0.05 16 6 C 0.00 -0.03 11.89 83.12 0.99 0.96 16 7 C -0.19 -2.76 10.56 23.62 0.25 -2.51 16 8 C -0.27 -5.33 6.29 -19.04 -0.12 -5.45 16 9 C 0.58 13.87 7.81 86.62 0.68 14.55 16 10 O -0.59 -17.16 14.76 -4.11 -0.06 -17.23 16 11 N -0.71 -13.96 5.44 -466.51 -2.54 -16.50 16 12 C 0.10 1.82 5.34 86.38 0.46 2.28 16 13 C 0.11 2.19 3.23 30.59 0.10 2.29 16 14 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 15 O -0.56 -12.22 13.03 -148.98 -1.94 -14.16 16 16 C 0.03 0.68 5.32 86.30 0.46 1.14 16 17 N -0.68 -20.91 6.07 -517.94 -3.15 -24.05 16 18 C 0.07 2.21 6.17 85.56 0.53 2.74 16 19 C 0.44 21.04 7.82 87.66 0.69 21.73 16 20 O -0.62 -35.24 15.78 -3.08 -0.05 -35.29 16 21 N -0.57 -29.76 5.29 -306.99 -1.62 -31.38 16 22 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16 23 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 25 N -0.92 -49.95 13.05 21.66 0.28 -49.66 16 26 Si 0.99 43.32 29.55 68.60 2.03 45.34 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.04 0.72 7.96 -2.39 -0.02 0.71 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 1.54 6.75 -2.39 -0.02 1.53 16 35 H 0.20 0.37 8.06 -2.91 -0.02 0.35 16 36 H 0.15 1.84 7.70 -2.91 -0.02 1.82 16 37 H 0.41 7.06 7.47 -92.71 -0.69 6.37 16 38 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.39 6.37 9.05 -74.06 -0.67 5.70 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.34 11.34 8.43 -89.69 -0.76 10.59 16 44 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 46 H 0.40 19.46 7.90 -92.71 -0.73 18.72 16 47 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -79.46 401.08 -4.29 -83.76 By element: Atomic # 1 Polarization: 48.64 SS G_CDS: -2.63 Total: 46.01 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 6.46 Total: 19.01 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -8.10 Total: -127.45 kcal Atomic # 8 Polarization: -64.63 SS G_CDS: -2.05 Total: -66.68 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -79.46 -4.29 -83.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753909195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.411 kcal (2) G-P(sol) polarization free energy of solvation -79.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds