Wall clock time and date at job start Tue Mar 31 2020 20:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29937 * 125.37965 * 2 1 4 4 C 1.36075 * 108.47981 * 180.02562 * 3 2 1 5 5 C 1.47420 * 126.44969 * 179.73820 * 4 3 2 6 6 O 1.21607 * 119.99795 * 180.02562 * 5 4 3 7 7 N 1.34772 * 119.99827 * 0.02719 * 5 4 3 8 8 C 1.46502 * 119.99562 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.47575 * 34.99975 * 8 7 5 10 10 C 1.53002 * 109.46896 * 274.99675 * 8 7 5 11 11 C 1.53008 * 109.47095 * 154.99836 * 8 7 5 12 12 N 1.46900 * 109.46849 * 304.99816 * 11 8 7 13 13 C 1.46898 * 111.00115 * 293.94940 * 12 11 8 14 14 C 1.46906 * 110.99530 * 169.99892 * 12 11 8 15 15 C 1.50700 * 109.46833 * 189.99737 * 14 12 11 16 16 O 1.21294 * 120.00160 * 0.02562 * 15 14 12 17 17 N 1.34778 * 120.00307 * 179.97438 * 15 14 12 18 18 C 1.37091 * 120.00327 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00265 * 0.02562 * 18 17 15 20 20 C 1.38953 * 119.99817 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99608 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00200 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47050 * 89.99565 * 22 20 18 24 24 H 1.48502 * 109.47055 * 209.99629 * 22 20 18 25 25 H 1.48507 * 109.47041 * 329.99843 * 22 20 18 26 26 C 1.36096 * 107.09623 * 0.02562 * 4 3 2 27 27 C 1.50696 * 126.51816 * 179.97438 * 26 4 3 28 28 O 1.34048 * 125.37919 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47449 * 89.99523 * 1 2 3 30 30 H 1.08994 * 109.47573 * 209.99750 * 1 2 3 31 31 H 1.09004 * 109.47317 * 329.99984 * 1 2 3 32 32 H 0.96996 * 120.00531 * 359.97438 * 7 5 4 33 33 H 1.09007 * 109.47046 * 299.99985 * 10 8 7 34 34 H 1.08994 * 109.47192 * 60.00021 * 10 8 7 35 35 H 1.09003 * 109.46814 * 180.02562 * 10 8 7 36 36 H 1.09006 * 109.47000 * 64.99720 * 11 8 7 37 37 H 1.08995 * 109.47156 * 184.99393 * 11 8 7 38 38 H 1.09004 * 109.46501 * 60.00258 * 13 12 11 39 39 H 1.09000 * 109.47106 * 179.97438 * 13 12 11 40 40 H 1.08994 * 109.47533 * 300.00571 * 13 12 11 41 41 H 1.08995 * 109.47260 * 309.99821 * 14 12 11 42 42 H 1.08992 * 109.47124 * 70.00242 * 14 12 11 43 43 H 0.97001 * 119.99485 * 0.02562 * 17 15 14 44 44 H 0.97005 * 119.99433 * 180.02562 * 21 20 18 45 45 H 1.09005 * 109.47255 * 90.00331 * 27 26 4 46 46 H 1.09002 * 109.47292 * 210.00146 * 27 26 4 47 47 H 1.09006 * 109.47703 * 330.00218 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6639 -0.0006 5 6 4.7440 1.5438 -0.0062 6 8 5.8604 1.0618 -0.0066 7 7 4.5878 2.8825 -0.0109 8 6 5.7632 3.7569 -0.0170 9 1 6.5558 3.2962 -0.6066 10 6 6.2508 3.9659 1.4181 11 6 5.3906 5.1080 -0.6310 12 7 4.8107 4.8968 -1.9640 13 6 5.8108 4.3547 -2.8934 14 6 4.2254 6.1389 -2.4863 15 6 3.4314 5.8356 -3.7307 16 8 3.3596 4.6967 -4.1418 17 7 2.8001 6.8297 -4.3863 18 6 2.0773 6.5537 -5.5180 19 1 2.0134 5.5396 -5.8841 20 6 1.4269 7.5787 -6.1942 21 7 0.7345 7.3142 -7.2793 22 14 1.5380 9.3327 -5.5615 23 1 2.7102 10.0070 -6.1753 24 1 0.2992 10.0682 -5.9216 25 1 1.6931 9.3174 -4.0846 26 6 3.5659 -0.6971 -0.0015 27 6 4.7800 -1.5897 -0.0030 28 8 2.2830 -1.0929 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 3.6973 3.2670 -0.0109 33 1 5.4582 4.4268 2.0076 34 1 6.5163 3.0035 1.8554 35 1 7.1251 4.6169 1.4135 36 1 4.6621 5.6085 0.0071 37 1 6.2838 5.7267 -0.7171 38 1 6.1771 3.3998 -2.5163 39 1 5.3549 4.2075 -3.8724 40 1 6.6423 5.0539 -2.9807 41 1 3.5689 6.5757 -1.7338 42 1 5.0220 6.8430 -2.7263 43 1 2.8572 7.7404 -4.0573 44 1 0.2808 8.0298 -7.7515 45 1 5.0735 -1.8057 1.0244 46 1 4.5453 -2.5216 -0.5173 47 1 5.5997 -1.0875 -0.5170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754329343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:34 Heat of formation + Delta-G solvation = -71.025340 kcal Electronic energy + Delta-G solvation = -29699.393180 eV Core-core repulsion = 25497.122166 eV Total energy + Delta-G solvation = -4202.271013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.49025 -40.89823 -40.34354 -38.37041 -36.18516 -35.99280 -35.55173 -34.04655 -33.73579 -32.12002 -30.91280 -29.63300 -28.01745 -27.34245 -26.54329 -24.71593 -23.74837 -22.69304 -21.44979 -21.33228 -21.22689 -20.15008 -19.04870 -18.12642 -17.81336 -17.31534 -16.89301 -16.71112 -16.64544 -16.16272 -15.73441 -15.59598 -15.39550 -15.18194 -15.01511 -14.83212 -14.49502 -14.33853 -14.30168 -14.08807 -13.64143 -13.58311 -13.53095 -13.40901 -13.19816 -13.16390 -12.89492 -12.78239 -12.67994 -12.46554 -12.37450 -12.32389 -11.97311 -11.86801 -11.71727 -11.45162 -11.15419 -10.36030 -10.21332 -10.12639 -9.72719 -9.19563 -8.39899 -6.00412 0.01384 0.95355 1.30823 1.36528 1.45169 1.45455 1.99606 2.10561 2.24271 2.27755 2.61551 2.92726 3.16663 3.25828 3.57443 3.71444 3.81067 4.08681 4.14264 4.19152 4.30671 4.34065 4.39832 4.45063 4.52935 4.54464 4.56905 4.62273 4.63535 4.69365 4.77142 4.78193 4.80949 4.89077 5.01091 5.09401 5.16240 5.21945 5.29722 5.52630 5.54725 5.90367 6.01341 6.17462 6.33378 6.61990 6.62489 6.91167 7.14440 7.42610 8.01522 8.78110 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.002917 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.686047 B = 9596.756082 C =11144.966961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.193 3.807 3 N -0.485 5.485 4 C -0.105 4.105 5 C 0.600 3.400 6 O -0.565 6.565 7 N -0.684 5.684 8 C 0.144 3.856 9 H 0.071 0.929 10 C -0.151 4.151 11 C 0.048 3.952 12 N -0.537 5.537 13 C 0.031 3.969 14 C 0.056 3.944 15 C 0.451 3.549 16 O -0.607 6.607 17 N -0.593 5.593 18 C -0.326 4.326 19 H 0.052 0.948 20 C -0.017 4.017 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.258 1.258 24 H -0.276 1.276 25 H -0.229 1.229 26 C 0.033 3.967 27 C -0.070 4.070 28 O -0.200 6.200 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.411 0.589 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.039 0.961 41 H 0.124 0.876 42 H 0.082 0.918 43 H 0.389 0.611 44 H 0.278 0.722 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.972 -7.547 23.101 25.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.016 4.016 3 N -0.216 5.216 4 C -0.224 4.224 5 C 0.386 3.614 6 O -0.446 6.446 7 N -0.333 5.333 8 C 0.040 3.960 9 H 0.089 0.911 10 C -0.210 4.210 11 C -0.079 4.079 12 N -0.262 5.262 13 C -0.117 4.117 14 C -0.075 4.075 15 C 0.238 3.762 16 O -0.490 6.490 17 N -0.235 5.235 18 C -0.455 4.455 19 H 0.070 0.930 20 C -0.215 4.215 21 N -0.578 5.578 22 Si 0.786 3.214 23 H -0.183 1.183 24 H -0.201 1.201 25 H -0.152 1.152 26 C -0.024 4.024 27 C -0.126 4.126 28 O -0.087 6.087 29 H 0.121 0.879 30 H 0.135 0.865 31 H 0.130 0.870 32 H 0.247 0.753 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.142 0.858 42 H 0.099 0.901 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.126 0.874 46 H 0.120 0.880 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.991 -8.275 22.704 25.156 hybrid contribution 0.036 0.793 -0.815 1.138 sum 7.027 -7.482 21.888 24.176 Atomic orbital electron populations 1.20588 0.77713 1.06973 1.06066 1.27190 0.97980 0.77611 0.98864 1.70742 1.00961 1.31162 1.18705 1.21658 0.92498 0.93167 1.15033 1.16803 0.86002 0.82582 0.76016 1.90711 1.24873 1.75758 1.53294 1.45665 1.11187 1.04519 1.71914 1.21146 0.87391 0.89746 0.97744 0.91080 1.22067 1.02534 1.02236 0.94132 1.22589 1.00683 0.95661 0.88982 1.61425 1.34300 1.27458 1.02996 1.22329 0.93062 0.99235 0.97058 1.21845 0.98935 0.92005 0.94740 1.20973 0.83184 0.84877 0.87124 1.90538 1.65412 1.23043 1.70046 1.42024 1.47135 1.09412 1.24930 1.18970 1.27844 0.96016 1.02678 0.93019 1.26129 0.95305 1.04358 0.95705 1.69818 1.33354 1.35552 1.19097 0.85349 0.79059 0.76357 0.80640 1.18274 1.20128 1.15175 1.24223 0.84765 0.94547 0.98846 1.20654 0.88543 0.97805 1.05634 1.84329 1.16248 1.38167 1.69992 0.87927 0.86467 0.86962 0.75318 0.91063 0.93403 0.89256 0.87908 0.90638 0.92291 0.93249 0.94219 0.85796 0.90053 0.77508 0.91221 0.87390 0.88001 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.51 71.23 0.75 -0.02 16 2 C 0.19 4.67 8.30 88.39 0.73 5.40 16 3 N -0.49 -14.62 11.06 -293.04 -3.24 -17.86 16 4 C -0.10 -3.20 7.00 40.41 0.28 -2.92 16 5 C 0.60 18.69 7.78 86.66 0.67 19.37 16 6 O -0.57 -18.74 14.46 -4.05 -0.06 -18.80 16 7 N -0.68 -18.72 4.80 -445.80 -2.14 -20.86 16 8 C 0.14 3.20 2.35 44.99 0.11 3.30 16 9 H 0.07 1.86 6.23 -2.39 -0.01 1.84 16 10 C -0.15 -2.51 9.48 71.98 0.68 -1.83 16 11 C 0.05 0.95 4.52 86.31 0.39 1.34 16 12 N -0.54 -15.93 4.22 -927.04 -3.92 -19.84 16 13 C 0.03 1.02 8.96 127.69 1.14 2.16 16 14 C 0.06 1.66 5.45 85.56 0.47 2.13 16 15 C 0.45 20.40 7.47 87.66 0.66 21.06 16 16 O -0.61 -34.14 13.91 -3.07 -0.04 -34.18 16 17 N -0.59 -27.95 5.09 -306.98 -1.56 -29.51 16 18 C -0.33 -19.25 10.16 84.04 0.85 -18.39 16 19 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 20 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 21 N -0.94 -57.02 13.96 21.66 0.30 -56.72 16 22 Si 0.97 38.72 27.74 68.60 1.90 40.62 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 24 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.23 -7.60 6.52 99.48 0.65 -6.95 16 26 C 0.03 0.86 7.44 25.19 0.19 1.05 16 27 C -0.07 -1.33 9.88 71.23 0.70 -0.62 16 28 O -0.20 -4.88 10.73 0.43 0.00 -4.88 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.41 11.59 8.33 -92.71 -0.77 10.82 16 33 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.62 7.93 -2.38 -0.02 1.60 16 37 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 38 H 0.06 1.91 6.58 -2.39 -0.02 1.89 16 39 H 0.05 2.08 5.83 -2.39 -0.01 2.06 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.12 2.91 7.93 -2.39 -0.02 2.89 16 42 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 43 H 0.39 15.04 5.76 -92.71 -0.53 14.50 16 44 H 0.28 15.46 8.31 -92.70 -0.77 14.69 16 45 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.10 2.19 6.47 -2.38 -0.02 2.17 16 Total: -1.00 -86.07 391.77 -1.00 -87.07 By element: Atomic # 1 Polarization: 43.77 SS G_CDS: -0.35 Total: 43.42 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: 8.10 Total: 31.55 kcal Atomic # 7 Polarization: -134.24 SS G_CDS: -10.55 Total: -144.80 kcal Atomic # 8 Polarization: -57.76 SS G_CDS: -0.10 Total: -57.86 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 1.90 Total: 40.62 kcal Total: -86.07 -1.00 -87.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.046 kcal (2) G-P(sol) polarization free energy of solvation -86.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds