Wall clock time and date at job start Tue Mar 31 2020 21:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33691 * 126.27399 * 2 1 4 4 C 1.30613 * 108.99940 * 179.97438 * 3 2 1 5 5 O 1.33665 * 109.15211 * 359.97438 * 4 3 2 6 6 C 1.35350 * 107.68484 * 359.75693 * 5 4 3 7 7 C 1.46718 * 126.64651 * 180.26611 * 6 5 4 8 8 O 1.21688 * 120.00234 * 180.14505 * 7 6 5 9 9 N 1.34779 * 120.00103 * 0.13967 * 7 6 5 10 10 C 1.46496 * 120.00263 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47190 * 324.99771 * 10 9 7 12 12 C 1.53002 * 109.47443 * 84.99920 * 10 9 7 13 13 C 1.53001 * 109.47351 * 205.00208 * 10 9 7 14 14 C 1.52998 * 109.47089 * 64.99713 * 13 10 9 15 15 C 1.53003 * 109.47223 * 180.02562 * 14 13 10 16 16 N 1.46900 * 109.47353 * 180.02562 * 15 14 13 17 17 C 1.46899 * 110.99843 * 180.02562 * 16 15 14 18 18 C 1.50705 * 109.46745 * 179.97438 * 17 16 15 19 19 O 1.21294 * 120.00269 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99811 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00116 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99914 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00228 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99700 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99923 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47453 * 60.00290 * 25 23 21 27 27 H 1.48504 * 109.46963 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46957 * 299.99877 * 25 23 21 29 29 H 1.09001 * 109.46953 * 90.02730 * 1 2 3 30 30 H 1.09000 * 109.47318 * 210.02328 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.02958 * 1 2 3 32 32 H 1.07996 * 125.42401 * 180.02562 * 4 3 2 33 33 H 0.97000 * 119.99862 * 0.02562 * 9 7 6 34 34 H 1.08998 * 109.46632 * 59.99906 * 12 10 9 35 35 H 1.08998 * 109.47429 * 180.02562 * 12 10 9 36 36 H 1.09001 * 109.46785 * 300.00362 * 12 10 9 37 37 H 1.08995 * 109.47408 * 184.99942 * 13 10 9 38 38 H 1.09004 * 109.46449 * 305.00019 * 13 10 9 39 39 H 1.09007 * 109.47171 * 299.99976 * 14 13 10 40 40 H 1.09002 * 109.47393 * 60.00259 * 14 13 10 41 41 H 1.09007 * 109.46587 * 299.99793 * 15 14 13 42 42 H 1.09002 * 109.47166 * 59.99580 * 15 14 13 43 43 H 1.00904 * 110.99525 * 303.95299 * 16 15 14 44 44 H 1.08999 * 109.46891 * 299.99136 * 17 16 15 45 45 H 1.08993 * 109.47122 * 59.99866 * 17 16 15 46 46 H 0.97002 * 119.99911 * 0.02562 * 20 18 17 47 47 H 0.97001 * 119.99730 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6900 0.0006 5 8 3.5891 -0.6460 0.0015 6 6 2.3137 -1.0992 0.0070 7 6 1.8827 -2.5016 0.0153 8 8 0.6966 -2.7736 0.0170 9 7 2.8004 -3.4886 0.0211 10 6 2.3701 -4.8890 0.0289 11 1 1.4586 -4.9857 0.6187 12 6 2.1004 -5.3477 -1.4056 13 6 3.4698 -5.7571 0.6436 14 6 3.6529 -5.3817 2.1155 15 6 4.7530 -6.2494 2.7301 16 7 4.9284 -5.8894 4.1435 17 6 5.9797 -6.7037 4.7676 18 6 6.1310 -6.3064 6.2135 19 8 5.4314 -5.4313 6.6784 20 7 7.0428 -6.9241 6.9902 21 6 7.1808 -6.5624 8.3053 22 1 6.5585 -5.7826 8.7191 23 6 8.1213 -7.1989 9.1060 24 7 8.8788 -8.1473 8.6025 25 14 8.3088 -6.7064 10.8982 26 1 7.0240 -6.9272 11.6093 27 1 9.3720 -7.5292 11.5290 28 1 8.6800 -5.2709 10.9808 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 4.4043 1.3444 0.0011 33 1 3.7459 -3.2718 0.0200 34 1 3.0119 -5.2509 -1.9954 35 1 1.7798 -6.3894 -1.3998 36 1 1.3169 -4.7292 -1.8436 37 1 3.1881 -6.8073 0.5689 38 1 4.4046 -5.5926 0.1077 39 1 3.9347 -4.3313 2.1903 40 1 2.7181 -5.5461 2.6514 41 1 4.4715 -7.2998 2.6554 42 1 5.6877 -6.0846 2.1941 43 1 5.1263 -4.9050 4.2440 44 1 5.7074 -7.7574 4.7066 45 1 6.9228 -6.5413 4.2460 46 1 7.6020 -7.6242 6.6185 47 1 9.5351 -8.5919 9.1615 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755492327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:18 Heat of formation + Delta-G solvation = -63.684384 kcal Electronic energy + Delta-G solvation = -28061.672012 eV Core-core repulsion = 23859.719326 eV Total energy + Delta-G solvation = -4201.952686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.85246 -40.13535 -38.33279 -37.26676 -35.86677 -35.42791 -33.89714 -32.78886 -31.95619 -31.23484 -30.63644 -28.14159 -27.35597 -25.22077 -24.44374 -23.49223 -22.47093 -21.53534 -21.17199 -20.96301 -19.21653 -18.67452 -17.88323 -17.31933 -16.98946 -16.77036 -16.09488 -15.72048 -15.21998 -15.05884 -14.83667 -14.60037 -14.54743 -14.26881 -13.92751 -13.68445 -13.60059 -13.42495 -13.30577 -13.16747 -12.67497 -12.61865 -12.46153 -11.95257 -11.85700 -11.58525 -11.52554 -11.46919 -11.38143 -11.29359 -11.03616 -10.95274 -10.81690 -10.48419 -10.44486 -10.21583 -9.65301 -9.50424 -9.26621 -8.46616 -8.05973 -7.96237 -6.42050 -3.82885 0.40379 2.00747 2.03283 2.69148 2.77166 3.19983 3.25477 3.30108 3.62376 3.90481 4.02181 4.21136 4.31064 4.33737 4.53854 4.70814 4.74580 5.00292 5.02121 5.06508 5.11454 5.21743 5.22943 5.25946 5.31243 5.39194 5.43450 5.48511 5.50399 5.55734 5.65150 5.67361 5.78360 5.84472 5.90606 5.97712 6.00038 6.10952 6.17476 6.27718 6.90329 7.17428 7.22663 7.54698 7.64293 7.65812 8.05899 8.61076 9.17480 9.53917 10.05617 10.75623 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013985 B = 0.001793 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.731314 B =15612.473754 C =16931.491599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.082 3.918 3 N -0.495 5.495 4 C 0.206 3.794 5 O -0.192 6.192 6 C -0.119 4.119 7 C 0.612 3.388 8 O -0.513 6.513 9 N -0.711 5.711 10 C 0.141 3.859 11 H 0.095 0.905 12 C -0.164 4.164 13 C -0.126 4.126 14 C -0.118 4.118 15 C 0.059 3.941 16 N -0.670 5.670 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.258 0.742 33 H 0.405 0.595 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.024 0.976 43 H 0.348 0.652 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.237 9.668 -24.555 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 N -0.224 5.224 4 C -0.019 4.019 5 O -0.077 6.077 6 C -0.175 4.175 7 C 0.397 3.603 8 O -0.390 6.390 9 N -0.362 5.362 10 C 0.038 3.962 11 H 0.113 0.887 12 C -0.222 4.222 13 C -0.164 4.164 14 C -0.156 4.156 15 C -0.070 4.070 16 N -0.303 5.303 17 C -0.082 4.082 18 C 0.225 3.775 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.273 0.727 33 H 0.240 0.760 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.167 0.833 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.040 10.082 -23.911 28.200 hybrid contribution 2.381 -0.272 0.284 2.414 sum -8.658 9.809 -23.626 27.007 Atomic orbital electron populations 1.20421 0.85231 1.04624 1.03719 1.22114 0.98482 0.86344 0.97235 1.70376 1.01370 1.31437 1.19196 1.28388 0.97673 0.79343 0.96474 1.84493 1.29572 1.24546 1.69138 1.22912 0.81522 0.96319 1.16702 1.16276 0.85824 0.81342 0.76842 1.90869 1.15695 1.81862 1.50579 1.46003 1.09780 1.06206 1.74174 1.21128 0.99031 0.78909 0.97177 0.88682 1.22187 1.02123 1.01954 0.95954 1.21887 0.98229 1.00199 0.96085 1.21574 1.00230 0.99685 0.94139 1.21972 0.96741 0.99964 0.88341 1.60069 1.47401 1.09757 1.13041 1.21667 0.93049 0.98829 0.94630 1.19832 0.84064 0.86117 0.87457 1.90523 1.47220 1.34174 1.74839 1.41859 1.33139 1.34625 1.10418 1.19659 1.18682 1.19272 0.85332 0.87985 1.25268 0.96066 0.96104 1.00541 1.69604 1.22911 1.24411 1.37428 0.85907 0.77985 0.78489 0.81776 1.19860 1.20977 1.19927 0.89975 0.88501 0.90330 0.72682 0.76031 0.92393 0.91135 0.92018 0.89708 0.91295 0.92098 0.90615 0.91102 0.95745 0.83305 0.89625 0.93986 0.77460 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 9.88 36.01 0.36 -0.36 16 2 C 0.08 0.84 7.16 -82.46 -0.59 0.25 16 3 N -0.49 -4.83 11.26 -10.88 -0.12 -4.95 16 4 C 0.21 1.38 13.21 52.24 0.69 2.07 16 5 O -0.19 -1.58 10.57 4.40 0.05 -1.53 16 6 C -0.12 -1.20 7.18 -36.84 -0.26 -1.46 16 7 C 0.61 6.32 7.75 -12.83 -0.10 6.22 16 8 O -0.51 -6.40 14.45 5.20 0.08 -6.33 16 9 N -0.71 -5.70 4.53 -55.10 -0.25 -5.94 16 10 C 0.14 1.07 2.57 -67.93 -0.17 0.89 16 11 H 0.10 0.87 7.58 -51.93 -0.39 0.48 16 12 C -0.16 -1.08 9.48 37.16 0.35 -0.73 16 13 C -0.13 -0.86 4.75 -26.73 -0.13 -0.98 16 14 C -0.12 -1.14 5.36 -26.73 -0.14 -1.28 16 15 C 0.06 0.69 5.68 -3.82 -0.02 0.66 16 16 N -0.67 -10.87 6.13 -115.05 -0.70 -11.57 16 17 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 18 C 0.44 10.52 7.82 -10.99 -0.09 10.44 16 19 O -0.58 -16.10 15.78 5.54 0.09 -16.02 16 20 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 25 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.92 6.45 -51.93 -0.33 0.59 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.26 0.35 8.06 -52.49 -0.42 -0.08 16 33 H 0.40 2.66 8.40 -40.82 -0.34 2.31 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.61 7.75 -51.92 -0.40 0.20 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 42 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.35 5.84 8.43 -39.29 -0.33 5.51 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 401.86 15.07 6.06 6.06 Total: -1.00 -34.92 401.86 -6.68 -41.60 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -7.13 Total: 12.39 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -0.38 Total: 8.50 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.41 Total: -60.79 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.21 Total: -23.88 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.92 -6.68 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755492327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.084 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds