Wall clock time and date at job start Tue Mar 31 2020 22:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.46721 * 2 1 4 4 N 1.33693 * 126.27800 * 270.02506 * 3 2 1 5 5 C 1.30619 * 108.99980 * 179.97438 * 4 3 2 6 6 O 1.33665 * 109.14786 * 359.74949 * 5 4 3 7 7 C 1.35341 * 107.68758 * 0.40015 * 6 5 4 8 8 C 1.46719 * 126.63990 * 179.86980 * 7 6 5 9 9 O 1.21694 * 119.99887 * 186.01779 * 8 7 6 10 10 N 1.34773 * 120.00679 * 6.01981 * 8 7 6 11 11 C 1.46503 * 119.99614 * 5.33584 * 10 8 7 12 12 C 1.46494 * 120.00331 * 185.33095 * 10 8 7 13 13 C 1.53005 * 109.47182 * 269.99792 * 12 10 8 14 14 H 1.08996 * 109.46403 * 65.00296 * 13 12 10 15 15 C 1.52997 * 109.47188 * 184.99950 * 13 12 10 16 16 N 1.46896 * 109.47078 * 305.00191 * 13 12 10 17 17 C 1.46904 * 110.99680 * 154.99842 * 16 13 12 18 18 C 1.50700 * 109.46849 * 179.97438 * 17 16 13 19 19 O 1.21294 * 120.00389 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00020 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00572 * 179.97438 * 20 18 17 22 22 H 1.08010 * 119.99491 * 0.02562 * 21 20 18 23 23 C 1.38941 * 120.00592 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99711 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00301 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47228 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47394 * 119.99889 * 25 23 21 28 28 H 1.48505 * 109.47095 * 240.00140 * 25 23 21 29 29 H 1.09002 * 109.47337 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47627 * 299.99445 * 1 2 3 31 31 H 1.09004 * 109.47720 * 59.99514 * 1 2 3 32 32 H 1.09001 * 109.46979 * 240.00932 * 2 1 3 33 33 H 1.08993 * 109.47247 * 120.00429 * 2 1 3 34 34 H 1.07996 * 125.42185 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.46579 * 275.28988 * 11 10 8 36 36 H 1.09000 * 109.47339 * 35.28401 * 11 10 8 37 37 H 1.08995 * 109.47520 * 155.29449 * 11 10 8 38 38 H 1.09006 * 109.47258 * 150.00372 * 12 10 8 39 39 H 1.08995 * 109.47323 * 30.00243 * 12 10 8 40 40 H 1.09000 * 109.47447 * 180.02562 * 15 13 12 41 41 H 1.08997 * 109.47442 * 300.00576 * 15 13 12 42 42 H 1.09004 * 109.46905 * 59.99990 * 15 13 12 43 43 H 1.00897 * 110.99934 * 278.94970 * 16 13 12 44 44 H 1.08993 * 109.47237 * 299.99934 * 17 16 13 45 45 H 1.08994 * 109.47427 * 60.00244 * 17 16 13 46 46 H 0.97005 * 119.99998 * 0.02562 * 20 18 17 47 47 H 0.97007 * 119.99609 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2954 2.1668 -1.0778 5 6 2.7107 3.3429 -0.6898 6 8 2.7202 3.3858 0.6461 7 6 2.3008 2.1814 1.0992 8 6 2.1572 1.7751 2.5017 9 8 1.8736 0.6238 2.7756 10 7 2.3393 2.6768 3.4867 11 6 2.5649 4.0862 3.1568 12 6 2.3115 2.2475 4.8870 13 6 0.8798 2.3364 5.4194 14 1 0.2495 1.6242 4.8869 15 6 0.8701 2.0083 6.9137 16 7 0.3643 3.6964 5.2132 17 6 -1.1029 3.6976 5.1397 18 6 -1.5941 5.1066 4.9289 19 8 -0.8001 6.0201 4.8484 20 7 -2.9156 5.3519 4.8298 21 6 -3.3626 6.6338 4.6386 22 1 -2.6555 7.4471 4.5669 23 6 -4.7250 6.8867 4.5370 24 7 -5.5853 5.8972 4.6247 25 14 -5.3339 8.6332 4.2757 26 1 -4.1734 9.5576 4.2110 27 1 -6.0960 8.7067 3.0033 28 1 -6.2162 9.0239 5.4045 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.9962 4.1532 -1.3443 35 1 3.6233 4.2462 2.9510 36 1 1.9795 4.3517 2.2766 37 1 2.2602 4.7095 3.9975 38 1 2.9597 2.8944 5.4783 39 1 2.6625 1.2181 4.9586 40 1 -0.1499 2.0712 7.2929 41 1 1.2527 0.9992 7.0667 42 1 1.5006 2.7205 7.4462 43 1 0.6906 4.3202 5.9360 44 1 -1.4255 3.0717 4.3077 45 1 -1.5137 3.3055 6.0700 46 1 -3.5507 4.6215 4.8946 47 1 -6.5365 6.0737 4.5534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755606938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:27 Heat of formation + Delta-G solvation = -44.723346 kcal Electronic energy + Delta-G solvation = -30152.773768 eV Core-core repulsion = 25951.643295 eV Total energy + Delta-G solvation = -4201.130473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.57983 -39.84291 -38.38090 -36.98010 -35.92032 -34.74768 -33.89793 -33.05370 -31.38021 -30.95248 -29.78253 -27.39892 -26.52011 -26.10064 -24.29465 -23.90019 -23.39143 -21.63171 -20.85672 -19.86774 -19.25993 -17.91541 -17.54478 -17.10230 -16.72202 -16.44928 -15.93135 -15.45023 -15.10713 -15.04292 -14.65195 -14.49188 -14.29675 -13.93560 -13.83398 -13.53369 -13.45561 -13.19859 -12.91723 -12.73304 -12.47492 -12.32748 -12.18062 -11.93508 -11.72612 -11.59316 -11.53082 -11.37075 -11.25466 -11.15041 -11.07891 -10.98087 -10.86592 -10.36532 -10.24570 -10.10057 -9.53883 -9.14443 -8.77432 -8.40309 -8.02294 -7.96297 -6.43578 -3.84566 0.72898 2.29974 2.35259 2.94277 3.10080 3.14466 3.25133 3.31913 3.87526 3.88983 4.07463 4.31277 4.45422 4.56634 4.85141 4.99943 5.07029 5.16592 5.22016 5.26381 5.29537 5.33261 5.36892 5.38061 5.43707 5.54083 5.60786 5.68256 5.71227 5.75046 5.86595 5.90844 5.98334 6.02443 6.06411 6.10081 6.18736 6.24462 6.25707 6.45810 7.13357 7.24555 7.44997 7.53198 7.64590 7.95499 8.04318 8.58900 9.15800 9.52519 10.03375 10.74193 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010550 B = 0.003083 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.348252 B = 9078.792474 C =10186.800215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C 0.078 3.922 4 N -0.493 5.493 5 C 0.193 3.807 6 O -0.182 6.182 7 C -0.104 4.104 8 C 0.605 3.395 9 O -0.523 6.523 10 N -0.581 5.581 11 C 0.088 3.912 12 C 0.132 3.868 13 C 0.063 3.937 14 H 0.083 0.917 15 C -0.180 4.180 16 N -0.659 5.659 17 C 0.053 3.947 18 C 0.442 3.558 19 O -0.585 6.585 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.254 0.746 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.347 0.653 44 H 0.082 0.918 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.464 -10.224 -4.029 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C -0.046 4.046 4 N -0.222 5.222 5 C -0.032 4.032 6 O -0.068 6.068 7 C -0.159 4.159 8 C 0.392 3.608 9 O -0.402 6.402 10 N -0.311 5.311 11 C -0.055 4.055 12 C 0.009 3.991 13 C -0.048 4.048 14 H 0.101 0.899 15 C -0.240 4.240 16 N -0.291 5.291 17 C -0.080 4.080 18 C 0.227 3.773 19 O -0.469 6.469 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.270 0.730 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.167 0.833 44 H 0.100 0.900 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.684 -10.295 -5.197 20.282 hybrid contribution -1.074 0.829 1.301 1.880 sum 15.611 -9.466 -3.896 18.667 Atomic orbital electron populations 1.21647 0.93743 1.02214 1.02251 1.20161 0.96671 0.87835 1.04251 1.22037 0.97941 0.98257 0.86414 1.70327 1.16961 1.03392 1.31537 1.28338 0.97327 0.97493 0.80011 1.84713 1.64690 1.33481 1.23923 1.22898 1.11843 0.84830 0.96307 1.16434 0.77775 0.85128 0.81493 1.90823 1.49328 1.18332 1.81741 1.47433 1.69041 1.08872 1.05737 1.21920 0.99787 0.80251 1.03539 1.21578 0.96414 1.01026 0.80119 1.22036 0.96584 0.91701 0.94528 0.89850 1.22447 1.02497 1.02174 0.96879 1.60190 1.08295 1.07071 1.53568 1.21664 0.88477 0.97126 1.00720 1.19805 0.83272 0.89655 0.84540 1.90503 1.54642 1.45849 1.55920 1.41882 1.05153 1.09834 1.63154 1.19738 0.91505 0.85350 1.46261 0.87895 1.25265 0.95727 0.99570 0.97389 1.69627 1.02759 1.31532 1.50314 0.85810 0.78809 0.81954 0.77826 1.19225 1.20735 1.20753 0.91723 0.92327 0.92658 0.90263 0.88130 0.73037 0.93453 0.90945 0.88523 0.90166 0.89539 0.92158 0.91949 0.92224 0.83291 0.89987 0.93893 0.77502 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.89 37.15 0.37 -1.26 16 2 C -0.05 -0.61 5.99 -27.89 -0.17 -0.77 16 3 C 0.08 1.03 6.41 -82.47 -0.53 0.50 16 4 N -0.49 -6.18 11.26 -10.88 -0.12 -6.31 16 5 C 0.19 1.89 13.21 52.25 0.69 2.58 16 6 O -0.18 -2.15 7.75 4.43 0.03 -2.11 16 7 C -0.10 -1.41 6.72 -36.84 -0.25 -1.66 16 8 C 0.60 8.57 7.63 -12.84 -0.10 8.47 16 9 O -0.52 -8.08 14.41 5.19 0.07 -8.00 16 10 N -0.58 -7.36 2.73 -183.11 -0.50 -7.86 16 11 C 0.09 1.06 8.89 59.85 0.53 1.60 16 12 C 0.13 1.44 5.08 -4.04 -0.02 1.42 16 13 C 0.06 0.76 2.89 -67.71 -0.20 0.56 16 14 H 0.08 1.15 7.80 -51.93 -0.41 0.74 16 15 C -0.18 -1.79 9.16 37.16 0.34 -1.45 16 16 N -0.66 -9.80 4.24 -108.00 -0.46 -10.26 16 17 C 0.05 0.92 5.97 -4.97 -0.03 0.89 16 18 C 0.44 10.19 7.82 -10.99 -0.09 10.11 16 19 O -0.58 -15.21 15.78 5.55 0.09 -15.12 16 20 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 21 C -0.30 -8.28 9.68 -14.94 -0.14 -8.43 16 22 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 25 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.24 6.36 -51.93 -0.33 0.90 16 34 H 0.25 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.99 5.98 -51.93 -0.31 0.68 16 37 H 0.10 1.26 7.07 -51.93 -0.37 0.90 16 38 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 39 H 0.09 0.91 7.50 -51.93 -0.39 0.52 16 40 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 43 H 0.35 5.24 8.17 -39.29 -0.32 4.92 16 44 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 45 H 0.04 0.68 7.44 -51.93 -0.39 0.30 16 46 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -33.08 392.52 -5.96 -39.04 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -6.95 Total: 13.83 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 0.32 Total: 13.04 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.41 Total: -62.52 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: 0.20 Total: -25.24 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.08 -5.96 -39.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755606938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.682 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds