Wall clock time and date at job start Tue Mar 31 2020 22:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.47433 * 2 1 4 4 N 1.34662 * 125.80278 * 265.02259 * 3 2 1 5 5 H 0.97003 * 124.84775 * 359.97438 * 4 3 2 6 6 C 1.36446 * 110.30060 * 179.97438 * 4 3 2 7 7 C 1.34490 * 108.85245 * 0.02562 * 6 4 3 8 8 C 1.36767 * 125.80117 * 84.99534 * 3 2 1 9 9 C 1.47269 * 126.94379 * 359.97438 * 8 3 2 10 10 O 1.21626 * 119.99661 * 0.02562 * 9 8 3 11 11 N 1.34772 * 119.99714 * 180.02562 * 9 8 3 12 12 C 1.46499 * 119.99656 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47406 * 179.97438 * 12 11 9 14 14 H 1.09002 * 109.46819 * 65.00240 * 13 12 11 15 15 C 1.53001 * 109.47381 * 184.99773 * 13 12 11 16 16 O 1.42901 * 109.46899 * 55.00398 * 15 13 12 17 17 N 1.46900 * 109.47203 * 305.00261 * 13 12 11 18 18 C 1.46899 * 110.99956 * 154.99403 * 17 13 12 19 19 C 1.50697 * 109.46994 * 179.97438 * 18 17 13 20 20 O 1.21292 * 120.00164 * 0.02562 * 19 18 17 21 21 N 1.34785 * 120.00005 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99803 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99876 * 359.97438 * 22 21 19 24 24 C 1.38948 * 119.99641 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00193 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99714 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47230 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.46862 * 120.00063 * 26 24 22 29 29 H 1.48498 * 109.47261 * 239.99867 * 26 24 22 30 30 H 1.08999 * 109.46797 * 300.00408 * 1 2 3 31 31 H 1.09000 * 109.46770 * 60.00213 * 1 2 3 32 32 H 1.09003 * 109.47014 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47249 * 239.99410 * 2 1 3 34 34 H 1.09000 * 109.46770 * 119.99787 * 2 1 3 35 35 H 1.07998 * 125.57228 * 179.97438 * 6 4 3 36 36 H 1.08004 * 126.82750 * 180.25911 * 7 6 4 37 37 H 0.97001 * 120.00515 * 359.97438 * 11 9 8 38 38 H 1.09006 * 109.47607 * 300.00140 * 12 11 9 39 39 H 1.09006 * 109.47326 * 59.99929 * 12 11 9 40 40 H 1.08996 * 109.47125 * 175.00067 * 15 13 12 41 41 H 1.08996 * 109.47343 * 295.00322 * 15 13 12 42 42 H 0.96697 * 114.00266 * 179.97438 * 16 15 13 43 43 H 1.00894 * 110.99828 * 278.95353 * 17 13 12 44 44 H 1.08995 * 109.47722 * 300.00125 * 18 17 13 45 45 H 1.09006 * 109.47140 * 60.00710 * 18 17 13 46 46 H 0.96994 * 120.00000 * 0.02562 * 21 19 18 47 47 H 0.96995 * 119.99689 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.3844 2.1318 -1.0880 5 1 2.3524 1.8022 -1.9998 6 6 2.7924 3.3822 -0.7248 7 6 2.7089 3.4950 0.6128 8 6 2.2079 2.2073 1.1050 9 6 1.9461 1.8365 2.5060 10 8 1.5285 0.7259 2.7733 11 7 2.1693 2.7279 3.4919 12 6 1.9083 2.3592 4.8855 13 6 2.2422 3.5418 5.7971 14 1 1.5625 4.3672 5.5850 15 6 2.0891 3.1180 7.2592 16 8 2.8932 1.9629 7.5070 17 7 3.6256 3.9720 5.5542 18 6 3.8093 5.3836 5.9169 19 6 5.2373 5.7877 5.6553 20 8 6.0245 4.9795 5.2099 21 7 5.6399 7.0473 5.9161 22 6 6.9389 7.4150 5.6775 23 1 7.6397 6.6953 5.2810 24 6 7.3540 8.7134 5.9469 25 7 6.5016 9.5887 6.4308 26 14 9.1241 9.2143 5.6225 27 1 9.8760 8.0533 5.0822 28 1 9.1517 10.3238 4.6359 29 1 9.7516 9.6641 6.8910 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.1282 4.1546 -1.4008 36 1 2.9565 4.3630 1.2059 37 1 2.5027 3.6135 3.2788 38 1 0.8567 2.0965 5.0012 39 1 2.5283 1.5049 5.1576 40 1 2.4117 3.9314 7.9090 41 1 1.0441 2.8835 7.4621 42 1 2.8453 1.6380 8.4165 43 1 4.2793 3.3835 6.0485 44 1 3.1408 6.0026 5.3186 45 1 3.5816 5.5197 6.9742 46 1 5.0105 7.6936 6.2725 47 1 6.7915 10.4950 6.6192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755625775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:11 Heat of formation + Delta-G solvation = -116.061390 kcal Electronic energy + Delta-G solvation = -29155.117228 eV Core-core repulsion = 24950.893305 eV Total energy + Delta-G solvation = -4204.223923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.15644 -40.40205 -39.90109 -38.72472 -36.41547 -35.91280 -34.97183 -34.31561 -33.23708 -32.19716 -30.92942 -29.18883 -27.81840 -26.83845 -25.63492 -24.40035 -22.98439 -21.90047 -21.45229 -21.08776 -20.23477 -19.89307 -18.52687 -18.46880 -17.87169 -16.95314 -16.90320 -16.68230 -16.39016 -16.25409 -15.89318 -15.59962 -15.35837 -15.23034 -15.09254 -14.92072 -14.67359 -14.38060 -14.20163 -13.95347 -13.88455 -13.53748 -13.28499 -13.26940 -13.01880 -12.92026 -12.87077 -12.56691 -12.38473 -12.29149 -12.21341 -12.11163 -11.83066 -11.49469 -10.93586 -10.77127 -10.31827 -9.98555 -9.97863 -9.63640 -9.29812 -9.07666 -8.45043 -5.92901 0.82702 1.37217 1.42648 1.56503 1.57478 2.08969 2.22550 2.30314 2.60912 2.70025 2.90211 3.22633 3.36950 3.68583 3.83323 3.87658 4.05142 4.14670 4.19173 4.32328 4.35527 4.38292 4.45517 4.46572 4.57722 4.58483 4.63837 4.71712 4.74007 4.81746 4.94355 5.02047 5.05482 5.12045 5.34610 5.35432 5.43330 5.66856 5.83644 5.92222 6.02914 6.13519 6.37161 6.63299 6.68365 6.83169 6.92250 7.15836 7.48416 7.59782 8.16041 8.72549 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010887 B = 0.002673 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.299709 B =10472.456437 C =12535.101046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.059 4.059 3 C 0.102 3.898 4 N -0.537 5.537 5 H 0.433 0.567 6 C -0.004 4.004 7 C -0.192 4.192 8 C -0.266 4.266 9 C 0.579 3.421 10 O -0.591 6.591 11 N -0.706 5.706 12 C 0.145 3.855 13 C 0.079 3.921 14 H 0.117 0.883 15 C 0.050 3.950 16 O -0.589 6.589 17 N -0.671 5.671 18 C 0.064 3.936 19 C 0.439 3.561 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.330 4.330 23 H 0.076 0.924 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.990 3.010 27 H -0.275 1.275 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.203 0.797 36 H 0.143 0.857 37 H 0.409 0.591 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.397 0.603 43 H 0.348 0.652 44 H 0.112 0.888 45 H 0.067 0.933 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.938 -11.619 -9.319 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 C -0.017 4.017 4 N -0.133 5.133 5 H 0.273 0.727 6 C -0.132 4.132 7 C -0.216 4.216 8 C -0.276 4.276 9 C 0.369 3.631 10 O -0.474 6.474 11 N -0.356 5.356 12 C 0.021 3.979 13 C -0.031 4.031 14 H 0.135 0.865 15 C -0.030 4.030 16 O -0.397 6.397 17 N -0.303 5.303 18 C -0.068 4.068 19 C 0.227 3.773 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.459 4.459 23 H 0.094 0.906 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.814 3.186 27 H -0.200 1.200 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.220 0.780 36 H 0.161 0.839 37 H 0.244 0.756 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.247 0.753 43 H 0.168 0.832 44 H 0.130 0.870 45 H 0.085 0.915 46 H 0.231 0.769 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.630 -12.501 -10.779 22.732 hybrid contribution 0.836 1.025 1.511 2.008 sum -14.794 -11.476 -9.268 20.892 Atomic orbital electron populations 1.21586 0.93546 1.02537 1.01368 1.20260 0.97055 0.88506 1.03925 1.20478 1.00037 0.95170 0.86058 1.41553 1.51119 1.11600 1.09057 0.72739 1.22201 1.06174 0.88545 0.96243 1.22254 1.06939 0.97217 0.95161 1.20279 1.17690 0.97561 0.92102 1.17721 0.76493 0.83756 0.85140 1.90667 1.49352 1.22402 1.85003 1.45600 1.66576 1.17311 1.06075 1.21100 0.99992 0.96919 0.79913 1.22078 0.90728 0.97583 0.92753 0.86500 1.22830 0.95863 0.88281 0.96046 1.86473 1.70418 1.46584 1.36225 1.60064 1.04660 1.01943 1.63643 1.21625 0.92994 0.91270 1.00922 1.20910 0.91231 0.82418 0.82790 1.90520 1.57164 1.52371 1.50881 1.41918 1.11065 1.10461 1.57667 1.19653 0.87972 0.96384 1.41938 0.90620 1.25979 1.03689 0.95106 0.96430 1.69669 1.36556 1.05382 1.44500 0.84917 0.77368 0.78066 0.78273 1.20021 1.19542 1.19675 0.94451 0.91868 0.90854 0.88689 0.90574 0.78029 0.83906 0.75551 0.90870 0.93300 0.92490 0.90487 0.75337 0.83233 0.87009 0.91473 0.76922 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.90 71.98 0.71 -1.68 16 2 C -0.06 -1.17 5.79 29.85 0.17 -1.00 16 3 C 0.10 2.32 6.43 41.78 0.27 2.59 16 4 N -0.54 -8.54 5.90 -182.73 -1.08 -9.61 16 5 H 0.43 3.44 8.96 -92.71 -0.83 2.61 16 6 C 0.00 -0.07 11.89 83.12 0.99 0.92 16 7 C -0.19 -4.76 10.56 23.62 0.25 -4.51 16 8 C -0.27 -7.59 6.29 -19.04 -0.12 -7.71 16 9 C 0.58 18.91 7.81 86.62 0.68 19.59 16 10 O -0.59 -21.78 14.76 -4.11 -0.06 -21.84 16 11 N -0.71 -20.79 5.38 -466.51 -2.51 -23.30 16 12 C 0.15 3.92 5.26 86.38 0.45 4.37 16 13 C 0.08 1.80 2.57 44.92 0.12 1.91 16 14 H 0.12 2.14 7.80 -2.39 -0.02 2.12 16 15 C 0.05 0.92 6.72 71.98 0.48 1.40 16 16 O -0.59 -12.83 12.05 -148.98 -1.80 -14.62 16 17 N -0.67 -20.83 5.32 -495.58 -2.63 -23.46 16 18 C 0.06 2.05 5.96 85.56 0.51 2.56 16 19 C 0.44 20.49 7.82 87.65 0.69 21.17 16 20 O -0.62 -34.76 15.78 -3.07 -0.05 -34.81 16 21 N -0.57 -28.88 5.29 -306.98 -1.62 -30.50 16 22 C -0.33 -18.64 9.68 84.04 0.81 -17.83 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 26 Si 0.99 42.88 29.55 68.60 2.03 44.90 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 30 H 0.04 0.88 7.96 -2.39 -0.02 0.86 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.96 6.75 -2.39 -0.02 1.95 16 35 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.14 3.51 7.70 -2.91 -0.02 3.49 16 37 H 0.41 11.73 7.26 -92.71 -0.67 11.06 16 38 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.05 1.60 7.39 -2.38 -0.02 1.58 16 40 H 0.06 1.00 7.35 -2.39 -0.02 0.99 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.40 5.02 9.12 -74.06 -0.68 4.34 16 43 H 0.35 12.65 7.64 -89.70 -0.69 11.96 16 44 H 0.11 3.05 8.05 -2.39 -0.02 3.03 16 45 H 0.07 1.86 7.36 -2.38 -0.02 1.84 16 46 H 0.40 18.79 7.90 -92.71 -0.73 18.06 16 47 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -79.72 396.05 -3.50 -83.22 By element: Atomic # 1 Polarization: 59.71 SS G_CDS: -2.54 Total: 57.17 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 6.48 Total: 21.61 kcal Atomic # 7 Polarization: -128.07 SS G_CDS: -7.56 Total: -135.63 kcal Atomic # 8 Polarization: -69.37 SS G_CDS: -1.90 Total: -71.28 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -79.72 -3.50 -83.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755625775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.842 kcal (2) G-P(sol) polarization free energy of solvation -79.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds