Wall clock time and date at job start Tue Mar 31 2020 22:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50712 * 109.47012 * 2 1 4 4 N 1.34659 * 125.79831 * 265.12981 * 3 2 1 5 5 H 0.96994 * 124.85469 * 0.06684 * 4 3 2 6 6 C 1.36445 * 110.29208 * 180.29511 * 4 3 2 7 7 C 1.34483 * 108.86074 * 359.75156 * 6 4 3 8 8 C 1.36765 * 125.79987 * 84.99601 * 3 2 1 9 9 C 1.47260 * 126.94396 * 359.97438 * 8 3 2 10 10 O 1.21626 * 120.00325 * 359.70199 * 9 8 3 11 11 N 1.34779 * 120.00159 * 179.70847 * 9 8 3 12 12 C 1.46499 * 120.00187 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46851 * 179.97438 * 12 11 9 14 14 H 1.08993 * 109.47416 * 294.99799 * 13 12 11 15 15 C 1.53001 * 109.46848 * 174.99855 * 13 12 11 16 16 O 1.42897 * 109.47472 * 305.00379 * 15 13 12 17 17 N 1.46901 * 109.47245 * 55.00305 * 13 12 11 18 18 C 1.46895 * 110.99816 * 204.99659 * 17 13 12 19 19 C 1.50706 * 109.47182 * 179.97438 * 18 17 13 20 20 O 1.21297 * 119.99667 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00081 * 179.72734 * 19 18 17 22 22 C 1.37095 * 119.99878 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00160 * 359.97438 * 22 21 19 24 24 C 1.38950 * 120.00380 * 179.97438 * 22 21 19 25 25 N 1.31412 * 119.99401 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00554 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46783 * 60.00161 * 26 24 22 28 28 H 1.48496 * 109.47291 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.46865 * 300.00343 * 26 24 22 30 30 H 1.08995 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47229 * 300.00677 * 1 2 3 32 32 H 1.09011 * 109.46886 * 60.00230 * 1 2 3 33 33 H 1.08998 * 109.47434 * 239.99974 * 2 1 3 34 34 H 1.08997 * 109.47123 * 119.99712 * 2 1 3 35 35 H 1.08007 * 125.57138 * 179.76836 * 6 4 3 36 36 H 1.08004 * 126.83644 * 180.02562 * 7 6 4 37 37 H 0.97002 * 119.99552 * 359.97438 * 11 9 8 38 38 H 1.08997 * 109.47243 * 60.00001 * 12 11 9 39 39 H 1.08999 * 109.46836 * 299.99904 * 12 11 9 40 40 H 1.09005 * 109.46975 * 65.00179 * 15 13 12 41 41 H 1.08997 * 109.47675 * 185.00010 * 15 13 12 42 42 H 0.96703 * 114.00471 * 180.02562 * 16 15 13 43 43 H 1.00902 * 110.99849 * 328.95038 * 17 13 12 44 44 H 1.09001 * 109.47613 * 60.00104 * 18 17 13 45 45 H 1.08998 * 109.47678 * 300.00000 * 18 17 13 46 46 H 0.96998 * 120.00525 * 359.97438 * 21 19 18 47 47 H 0.97004 * 120.00112 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.3823 2.1326 -1.0882 5 1 2.3476 1.8041 -2.0002 6 6 2.7975 3.3804 -0.7242 7 6 2.7152 3.4929 0.6133 8 6 2.2078 2.2075 1.1050 9 6 1.9460 1.8367 2.5059 10 8 1.5230 0.7280 2.7728 11 7 2.1752 2.7259 3.4925 12 6 1.9142 2.3572 4.8861 13 6 2.2556 3.5372 5.7983 14 1 3.3258 3.7372 5.7485 15 6 1.8667 3.1976 7.2385 16 8 0.4886 2.8222 7.2840 17 7 1.5141 4.7266 5.3584 18 6 2.2030 5.9577 5.7680 19 6 1.4149 7.1539 5.2998 20 8 0.3809 6.9963 4.6857 21 7 1.8561 8.3987 5.5686 22 6 1.1389 9.4869 5.1431 23 1 0.2206 9.3466 4.5921 24 6 1.5933 10.7703 5.4206 25 7 2.7103 10.9409 6.0915 26 14 0.6165 12.2530 4.8402 27 1 -0.7418 12.2161 5.4391 28 1 1.3095 13.4975 5.2600 29 1 0.5057 12.2240 3.3597 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.1366 4.1517 -1.3999 36 1 2.9713 4.3579 1.2073 37 1 2.5129 3.6100 3.2798 38 1 2.5301 1.4995 5.1565 39 1 0.8615 2.0998 5.0028 40 1 2.4805 2.3704 7.5952 41 1 2.0269 4.0690 7.8734 42 1 0.1722 2.5933 8.1687 43 1 1.3644 4.7109 4.3607 44 1 3.1981 5.9822 5.3240 45 1 2.2892 5.9816 6.8543 46 1 2.6805 8.5248 6.0638 47 1 3.0279 11.8369 6.2850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755625776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:15 Heat of formation + Delta-G solvation = -110.371891 kcal Electronic energy + Delta-G solvation = -29208.264228 eV Core-core repulsion = 25004.287020 eV Total energy + Delta-G solvation = -4203.977208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.22277 -40.51443 -39.96730 -38.61679 -36.55096 -35.93992 -34.96816 -34.34834 -33.24836 -32.25775 -31.00552 -29.23735 -27.91228 -26.94667 -25.69375 -24.44698 -23.07915 -21.71266 -21.40681 -21.14065 -20.48484 -19.88891 -18.60230 -18.37900 -18.02821 -17.22265 -16.90169 -16.54506 -16.49338 -16.34024 -15.94301 -15.57567 -15.36593 -15.21062 -15.06115 -14.82901 -14.66668 -14.56741 -14.28695 -14.01878 -13.97112 -13.53247 -13.37815 -13.30708 -13.03888 -13.01897 -12.88318 -12.65838 -12.41573 -12.34123 -12.11744 -11.93478 -11.86815 -11.49155 -10.89671 -10.74235 -10.32672 -10.13776 -9.99808 -9.73639 -9.30969 -9.13555 -8.45263 -5.93552 0.74960 1.40451 1.42445 1.52448 1.53090 2.06894 2.11176 2.29922 2.50742 2.58167 2.87579 3.22215 3.47005 3.48348 3.79187 3.81587 4.03654 4.13136 4.16958 4.29445 4.32602 4.40733 4.42314 4.47149 4.52420 4.55144 4.63410 4.68389 4.73254 4.79669 4.89258 4.96775 5.03714 5.07640 5.29816 5.31733 5.42323 5.47268 5.77965 5.89684 5.97063 6.11180 6.32127 6.54567 6.62347 6.68155 7.09211 7.14616 7.32552 7.58221 8.14424 8.71866 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010423 B = 0.002721 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.707304 B =10288.411003 C =12258.183803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.058 4.058 3 C 0.106 3.894 4 N -0.536 5.536 5 H 0.433 0.567 6 C -0.001 4.001 7 C -0.194 4.194 8 C -0.269 4.269 9 C 0.585 3.415 10 O -0.581 6.581 11 N -0.724 5.724 12 C 0.133 3.867 13 C 0.078 3.922 14 H 0.087 0.913 15 C 0.089 3.911 16 O -0.582 6.582 17 N -0.672 5.672 18 C 0.063 3.937 19 C 0.438 3.562 20 O -0.623 6.623 21 N -0.571 5.571 22 C -0.333 4.333 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.204 0.796 36 H 0.145 0.855 37 H 0.402 0.598 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.389 0.611 43 H 0.341 0.659 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.600 -19.586 -9.288 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.096 4.096 3 C -0.014 4.014 4 N -0.132 5.132 5 H 0.273 0.727 6 C -0.129 4.129 7 C -0.218 4.218 8 C -0.279 4.279 9 C 0.376 3.624 10 O -0.463 6.463 11 N -0.375 5.375 12 C 0.010 3.990 13 C -0.032 4.032 14 H 0.105 0.895 15 C 0.010 3.990 16 O -0.389 6.389 17 N -0.307 5.307 18 C -0.069 4.069 19 C 0.225 3.775 20 O -0.510 6.510 21 N -0.209 5.209 22 C -0.463 4.463 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.200 1.200 28 H -0.194 1.194 29 H -0.196 1.196 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.220 0.780 36 H 0.163 0.837 37 H 0.237 0.763 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.238 0.762 43 H 0.162 0.838 44 H 0.092 0.908 45 H 0.123 0.877 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.361 -20.181 -9.666 23.010 hybrid contribution 0.686 1.424 -0.120 1.585 sum 6.047 -18.757 -9.786 22.004 Atomic orbital electron populations 1.21615 0.94159 1.02561 1.01135 1.20268 0.96502 0.88523 1.04301 1.20499 0.99630 0.95236 0.86030 1.41575 1.50859 1.11722 1.09076 0.72652 1.22225 1.05892 0.88572 0.96235 1.22253 1.07198 0.97017 0.95308 1.20222 1.18104 0.97677 0.91927 1.17680 0.76117 0.83656 0.84959 1.90692 1.48118 1.22627 1.84864 1.45793 1.67773 1.17271 1.06700 1.21297 1.01662 0.96838 0.79239 1.22033 0.96974 0.88944 0.95200 0.89536 1.22198 0.83063 0.99227 0.94513 1.86576 1.26484 1.90255 1.35573 1.60021 1.49811 0.99889 1.21022 1.21660 0.95109 0.87692 1.02482 1.20864 0.87539 0.84979 0.84079 1.90516 1.27554 1.86330 1.46561 1.41893 1.24168 1.04445 1.50390 1.19604 1.06899 0.85278 1.34520 0.90538 1.25992 0.97426 1.00983 0.96696 1.69659 1.21777 1.24639 1.39962 0.85028 0.78005 0.76872 0.78685 1.19977 1.19411 1.19622 0.90675 0.94954 0.92112 0.88296 0.90056 0.77963 0.83703 0.76261 0.90107 0.92330 0.90526 0.92946 0.76188 0.83811 0.90788 0.87676 0.76903 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.89 71.98 0.71 -1.90 16 2 C -0.06 -1.06 5.79 29.85 0.17 -0.89 16 3 C 0.11 2.23 6.43 41.78 0.27 2.50 16 4 N -0.54 -7.65 5.90 -182.71 -1.08 -8.73 16 5 H 0.43 2.83 8.96 -92.71 -0.83 2.00 16 6 C 0.00 -0.02 11.89 83.12 0.99 0.96 16 7 C -0.19 -4.35 10.56 23.62 0.25 -4.10 16 8 C -0.27 -7.10 6.29 -19.04 -0.12 -7.22 16 9 C 0.59 17.91 7.81 86.61 0.68 18.59 16 10 O -0.58 -20.44 14.74 -4.11 -0.06 -20.50 16 11 N -0.72 -19.70 4.99 -466.53 -2.33 -22.02 16 12 C 0.13 3.54 5.20 86.38 0.45 3.98 16 13 C 0.08 1.87 2.60 44.92 0.12 1.99 16 14 H 0.09 1.64 7.80 -2.39 -0.02 1.62 16 15 C 0.09 1.87 6.80 71.98 0.49 2.36 16 16 O -0.58 -14.83 12.64 -148.98 -1.88 -16.71 16 17 N -0.67 -21.90 5.87 -495.58 -2.91 -24.81 16 18 C 0.06 2.09 5.96 85.56 0.51 2.60 16 19 C 0.44 20.81 7.82 87.66 0.69 21.50 16 20 O -0.62 -35.24 15.78 -3.08 -0.05 -35.29 16 21 N -0.57 -29.07 5.29 -306.98 -1.62 -30.70 16 22 C -0.33 -18.94 9.68 84.04 0.81 -18.12 16 23 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 24 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 25 N -0.92 -49.17 13.05 21.66 0.28 -48.88 16 26 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 29 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.03 0.83 7.95 -2.38 -0.02 0.82 16 32 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.88 6.76 -2.39 -0.02 1.86 16 35 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.15 3.10 7.70 -2.91 -0.02 3.07 16 37 H 0.40 10.08 6.49 -92.71 -0.60 9.47 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.06 1.93 7.40 -2.39 -0.02 1.91 16 40 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.05 1.09 7.35 -2.39 -0.02 1.07 16 42 H 0.39 6.25 9.12 -74.06 -0.68 5.57 16 43 H 0.34 12.04 6.41 -89.69 -0.58 11.47 16 44 H 0.07 2.03 8.06 -2.39 -0.02 2.02 16 45 H 0.11 3.14 7.36 -2.39 -0.02 3.12 16 46 H 0.40 18.99 7.90 -92.71 -0.73 18.25 16 47 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -81.27 394.83 -3.50 -84.76 By element: Atomic # 1 Polarization: 58.19 SS G_CDS: -2.35 Total: 55.84 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 6.48 Total: 22.13 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -7.66 Total: -135.14 kcal Atomic # 8 Polarization: -70.51 SS G_CDS: -1.99 Total: -72.50 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -81.27 -3.50 -84.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755625776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.609 kcal (2) G-P(sol) polarization free energy of solvation -81.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds