Wall clock time and date at job start Tue Mar 31 2020 21:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46823 * 2 1 4 4 C 1.53000 * 109.46806 * 119.99992 * 2 1 3 5 5 N 1.46497 * 109.47181 * 65.00477 * 4 2 1 6 6 C 1.36567 * 119.34808 * 89.99252 * 5 4 2 7 7 N 1.36063 * 120.53354 * 359.97438 * 6 5 4 8 8 C 1.40566 * 118.92956 * 179.70260 * 6 5 4 9 9 C 1.41125 * 121.06968 * 180.30060 * 8 6 5 10 10 O 1.21457 * 119.99810 * 2.71954 * 9 8 6 11 11 C 1.50700 * 119.99670 * 182.72474 * 9 8 6 12 12 N 1.46509 * 109.46906 * 179.97438 * 11 9 8 13 13 C 1.46501 * 119.99714 * 89.99513 * 12 11 9 14 14 C 1.36930 * 119.99889 * 269.99874 * 12 11 9 15 15 H 1.08000 * 120.00158 * 21.55546 * 14 12 11 16 16 C 1.38814 * 120.00155 * 201.55409 * 14 12 11 17 17 N 1.31618 * 119.99700 * 11.26987 * 16 14 12 18 18 Si 1.86797 * 120.00216 * 191.26991 * 16 14 12 19 19 H 1.48500 * 109.47253 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47265 * 120.00071 * 18 16 14 21 21 H 1.48507 * 109.47038 * 240.00186 * 18 16 14 22 22 C 1.46862 * 117.86109 * 0.27637 * 8 6 5 23 23 O 1.21717 * 120.69205 * 180.02562 * 22 8 6 24 24 N 1.34902 * 118.61294 * 0.02562 * 22 8 6 25 25 C 1.46506 * 119.56638 * 180.02562 * 24 22 8 26 26 C 1.34225 * 119.33453 * 270.27927 * 5 4 2 27 27 O 1.21537 * 118.79514 * 0.02702 * 26 5 4 28 28 H 1.09007 * 109.46946 * 299.99790 * 1 2 3 29 29 H 1.09001 * 109.47497 * 59.99581 * 1 2 3 30 30 H 1.09001 * 109.47546 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46619 * 239.99807 * 2 1 3 32 32 H 1.08996 * 109.46722 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47273 * 299.99975 * 3 2 1 34 34 H 1.08993 * 109.47168 * 60.00336 * 3 2 1 35 35 H 1.08996 * 109.47304 * 304.99621 * 4 2 1 36 36 H 1.09001 * 109.46801 * 184.99715 * 4 2 1 37 37 H 0.97006 * 119.99906 * 334.66278 * 7 6 5 38 38 H 0.97004 * 120.00394 * 154.39596 * 7 6 5 39 39 H 1.09000 * 109.46935 * 299.99256 * 11 9 8 40 40 H 1.08997 * 109.47233 * 60.00077 * 11 9 8 41 41 H 1.09005 * 109.46309 * 93.27678 * 13 12 11 42 42 H 1.09002 * 109.47037 * 213.26901 * 13 12 11 43 43 H 1.08997 * 109.47383 * 333.27698 * 13 12 11 44 44 H 0.96998 * 120.00103 * 179.97438 * 17 16 14 45 45 H 1.08990 * 109.47257 * 359.97438 * 25 24 22 46 46 H 1.09000 * 109.46880 * 119.99724 * 25 24 22 47 47 H 1.08997 * 109.46882 * 239.99394 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 -2.1328 1.1905 6 6 2.4926 -3.0336 0.6007 7 7 3.6786 -2.6285 0.0709 8 6 2.1149 -4.3868 0.5548 9 6 2.9512 -5.3566 -0.0381 10 8 4.0380 -5.0359 -0.4752 11 6 2.4955 -6.7902 -0.1290 12 7 3.5339 -7.5922 -0.7811 13 6 4.5784 -8.2317 0.0230 14 6 3.5281 -7.7440 -2.1419 15 1 3.0082 -7.0295 -2.7628 16 6 4.1907 -8.8162 -2.7236 17 7 4.6327 -9.8025 -1.9724 18 14 4.4548 -8.8594 -4.5722 19 1 3.8681 -7.6405 -5.1848 20 1 5.9102 -8.9076 -4.8633 21 1 3.7966 -10.0643 -5.1383 22 6 0.8222 -4.7589 1.1442 23 8 0.4445 -5.9159 1.1333 24 7 0.0623 -3.7916 1.6980 25 6 -1.2307 -4.1395 2.2925 26 6 0.4761 -2.5141 1.7125 27 8 -0.2386 -1.6731 2.2214 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6444 1.2952 37 1 3.7886 -1.7122 -0.2279 38 1 4.4154 -3.2550 -0.0044 39 1 2.3127 -7.1776 0.8733 40 1 1.5763 -6.8430 -0.7124 41 1 4.2751 -9.2493 0.2694 42 1 5.5089 -8.2571 -0.5441 43 1 4.7280 -7.6646 0.9417 44 1 5.0953 -10.5519 -2.3788 45 1 -1.4006 -5.2113 2.1911 46 1 -1.2293 -3.8699 3.3486 47 1 -2.0243 -3.5961 1.7798 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103472802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:27 Heat of formation + Delta-G solvation = -30.937183 kcal Electronic energy + Delta-G solvation = -31237.346781 eV Core-core repulsion = 27036.814120 eV Total energy + Delta-G solvation = -4200.532660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.58334 -39.45419 -39.21883 -37.61510 -36.29888 -34.94250 -34.83432 -33.80037 -31.36772 -30.81962 -28.10497 -27.59930 -26.96922 -26.56855 -25.61165 -24.07972 -23.24232 -21.60702 -20.93520 -19.83657 -19.46476 -17.93773 -17.69255 -17.38270 -16.53936 -16.32276 -16.11551 -15.75121 -15.24402 -15.05564 -14.89000 -14.66407 -14.37740 -14.07214 -13.67184 -13.47213 -13.37060 -13.16758 -12.94719 -12.78841 -12.76108 -12.48683 -12.43018 -12.37675 -11.67790 -11.61476 -11.43592 -11.38208 -11.07318 -10.95029 -10.74425 -10.52396 -10.21176 -10.11146 -9.95977 -9.79907 -9.70115 -9.63602 -9.00563 -8.32427 -8.13292 -6.54473 -5.54176 -2.96833 0.90503 1.54162 1.83340 2.73463 2.91991 3.24774 3.48913 3.54906 3.58105 3.77876 4.06688 4.20215 4.34281 4.49868 4.65523 4.69138 4.84181 4.94478 5.10741 5.17588 5.25354 5.25527 5.32295 5.37723 5.41520 5.46285 5.55962 5.62395 5.63218 5.67448 5.76952 5.87375 5.94768 6.02575 6.53656 6.62923 6.72361 6.87067 6.98662 7.00185 7.34020 7.42046 7.62368 7.89001 7.97426 7.99443 8.49086 8.65937 9.42689 10.05594 10.54534 11.51841 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015297 B = 0.003403 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.964413 B = 8226.095285 C = 9172.110486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.144 4.144 4 C 0.101 3.899 5 N -0.542 5.542 6 C 0.529 3.471 7 N -0.808 5.808 8 C -0.424 4.424 9 C 0.399 3.601 10 O -0.486 6.486 11 C 0.128 3.872 12 N -0.589 5.589 13 C 0.170 3.830 14 C -0.237 4.237 15 H 0.065 0.935 16 C -0.003 4.003 17 N -0.912 5.912 18 Si 0.904 3.096 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.570 3.430 23 O -0.494 6.494 24 N -0.561 5.561 25 C 0.082 3.918 26 C 0.712 3.288 27 O -0.536 6.536 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.401 0.599 38 H 0.439 0.561 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.026 0.974 42 H 0.047 0.953 43 H -0.009 1.009 44 H 0.249 0.751 45 H 0.104 0.896 46 H 0.075 0.925 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 23.756 9.282 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C -0.202 4.202 4 C -0.020 4.020 5 N -0.267 5.267 6 C 0.306 3.694 7 N -0.361 5.361 8 C -0.441 4.441 9 C 0.280 3.720 10 O -0.365 6.365 11 C -0.001 4.001 12 N -0.309 5.309 13 C 0.025 3.975 14 C -0.367 4.367 15 H 0.083 0.917 16 C -0.200 4.200 17 N -0.559 5.559 18 Si 0.735 3.265 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.219 1.219 22 C 0.366 3.634 23 O -0.368 6.368 24 N -0.305 5.305 25 C -0.059 4.059 26 C 0.415 3.585 27 O -0.409 6.409 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.232 0.768 38 H 0.286 0.714 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.010 0.990 44 H 0.060 0.940 45 H 0.123 0.877 46 H 0.093 0.907 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.031 23.535 9.342 26.279 hybrid contribution 0.447 0.260 -1.165 1.275 sum -6.585 23.795 8.177 26.008 Atomic orbital electron populations 1.21842 0.93550 1.02237 1.02238 1.21601 0.97976 0.97041 0.97063 1.21768 1.01049 0.94544 1.02858 1.22140 1.01252 0.76991 1.01657 1.44921 1.18129 1.10271 1.53380 1.18545 0.81439 0.87687 0.81726 1.42974 1.12420 1.17572 1.63110 1.20900 1.02529 0.91935 1.28756 1.21936 0.84548 0.92441 0.73081 1.90187 1.22625 1.82062 1.41647 1.20976 0.92748 0.87784 0.98613 1.43727 1.27061 1.56348 1.03813 1.20750 0.92066 0.94107 0.90572 1.19199 1.30300 1.05151 0.82005 0.91749 1.24938 1.01936 0.95555 0.97596 1.70094 1.43301 1.09114 1.33354 0.86180 0.77435 0.77182 0.85739 1.20533 1.21823 1.21887 1.18051 0.83765 0.84780 0.76805 1.90882 1.72423 1.17215 1.56245 1.46230 1.22167 1.06877 1.55265 1.21877 0.81392 1.03966 0.98687 1.15321 0.80707 0.83186 0.79323 1.90989 1.52515 1.49457 1.47921 0.91499 0.92626 0.93008 0.90740 0.92249 0.91712 0.91961 0.87022 0.88727 0.76798 0.71410 0.90700 0.90066 0.95572 0.93446 0.99047 0.94049 0.87725 0.90654 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 7.89 37.16 0.29 -0.84 16 2 C -0.12 -0.73 3.05 -90.62 -0.28 -1.00 16 3 C -0.14 -0.62 9.19 37.16 0.34 -0.27 16 4 C 0.10 0.67 4.35 -4.04 -0.02 0.65 16 5 N -0.54 -5.46 2.49 -120.43 -0.30 -5.76 16 6 C 0.53 6.36 7.53 -153.56 -1.16 5.21 16 7 N -0.81 -7.91 7.97 31.60 0.25 -7.66 16 8 C -0.42 -6.83 5.92 -104.44 -0.62 -7.44 16 9 C 0.40 8.06 6.98 -33.21 -0.23 7.83 16 10 O -0.49 -10.42 13.83 5.40 0.07 -10.34 16 11 C 0.13 2.97 4.35 -5.19 -0.02 2.95 16 12 N -0.59 -16.20 2.42 -182.49 -0.44 -16.65 16 13 C 0.17 4.58 8.96 59.85 0.54 5.12 16 14 C -0.24 -7.00 9.68 -15.06 -0.15 -7.15 16 15 H 0.06 1.89 7.85 -52.49 -0.41 1.48 16 16 C 0.00 -0.10 5.13 -17.43 -0.09 -0.19 16 17 N -0.91 -28.00 10.54 55.49 0.58 -27.42 16 18 Si 0.90 23.09 29.57 -169.99 -5.03 18.07 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 C 0.57 9.04 7.59 -12.72 -0.10 8.95 16 23 O -0.49 -9.07 13.09 5.17 0.07 -9.00 16 24 N -0.56 -7.25 2.95 -129.81 -0.38 -7.63 16 25 C 0.08 0.84 9.92 59.85 0.59 1.44 16 26 C 0.71 8.50 6.68 -87.85 -0.59 7.92 16 27 O -0.54 -6.63 13.60 5.33 0.07 -6.56 16 28 H 0.07 0.56 7.91 -51.93 -0.41 0.15 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.53 6.03 -51.93 -0.31 0.22 16 31 H 0.07 0.49 7.92 -51.93 -0.41 0.08 16 32 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.11 0.75 7.32 -51.93 -0.38 0.37 16 36 H 0.09 0.41 6.82 -51.93 -0.35 0.05 16 37 H 0.40 2.46 7.11 -40.82 -0.29 2.17 16 38 H 0.44 5.32 6.00 -40.82 -0.24 5.07 16 39 H 0.08 1.70 7.21 -51.93 -0.37 1.33 16 40 H 0.08 1.94 7.48 -51.93 -0.39 1.55 16 41 H 0.03 0.74 7.49 -51.93 -0.39 0.35 16 42 H 0.05 1.37 7.06 -51.93 -0.37 1.00 16 43 H -0.01 -0.22 8.05 -51.93 -0.42 -0.64 16 44 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.10 1.11 6.89 -51.93 -0.36 0.75 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -36.19 373.33 -7.73 -43.92 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.78 Total: 0.26 kcal Atomic # 6 Polarization: 24.62 SS G_CDS: -1.48 Total: 23.15 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -0.29 Total: -65.12 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: 0.22 Total: -25.90 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.03 Total: 18.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.19 -7.73 -43.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103472802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.982 kcal (2) G-P(sol) polarization free energy of solvation -36.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds