Wall clock time and date at job start Tue Mar 31 2020 21:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46823 * 2 1 4 4 C 1.53000 * 109.46806 * 119.99992 * 2 1 3 5 5 N 1.46497 * 109.47181 * 65.00477 * 4 2 1 6 6 C 1.36567 * 119.34808 * 89.99252 * 5 4 2 7 7 N 1.36063 * 120.53354 * 359.97438 * 6 5 4 8 8 C 1.40566 * 118.92956 * 179.70260 * 6 5 4 9 9 C 1.41125 * 121.06968 * 180.30060 * 8 6 5 10 10 O 1.21457 * 119.99810 * 2.71954 * 9 8 6 11 11 C 1.50700 * 119.99670 * 182.72474 * 9 8 6 12 12 N 1.46509 * 109.46906 * 179.97438 * 11 9 8 13 13 C 1.46501 * 119.99714 * 89.99513 * 12 11 9 14 14 C 1.36930 * 119.99889 * 269.99874 * 12 11 9 15 15 H 1.08000 * 120.00158 * 21.55546 * 14 12 11 16 16 C 1.38814 * 120.00155 * 201.55409 * 14 12 11 17 17 N 1.31618 * 119.99700 * 11.26987 * 16 14 12 18 18 Si 1.86797 * 120.00216 * 191.26991 * 16 14 12 19 19 H 1.48500 * 109.47253 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47265 * 120.00071 * 18 16 14 21 21 H 1.48507 * 109.47038 * 240.00186 * 18 16 14 22 22 C 1.46862 * 117.86109 * 0.27637 * 8 6 5 23 23 O 1.21717 * 120.69205 * 180.02562 * 22 8 6 24 24 N 1.34902 * 118.61294 * 0.02562 * 22 8 6 25 25 C 1.46506 * 119.56638 * 180.02562 * 24 22 8 26 26 C 1.34225 * 119.33453 * 270.27927 * 5 4 2 27 27 O 1.21537 * 118.79514 * 0.02702 * 26 5 4 28 28 H 1.09007 * 109.46946 * 299.99790 * 1 2 3 29 29 H 1.09001 * 109.47497 * 59.99581 * 1 2 3 30 30 H 1.09001 * 109.47546 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46619 * 239.99807 * 2 1 3 32 32 H 1.08996 * 109.46722 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47273 * 299.99975 * 3 2 1 34 34 H 1.08993 * 109.47168 * 60.00336 * 3 2 1 35 35 H 1.08996 * 109.47304 * 304.99621 * 4 2 1 36 36 H 1.09001 * 109.46801 * 184.99715 * 4 2 1 37 37 H 0.97006 * 119.99906 * 334.66278 * 7 6 5 38 38 H 0.97004 * 120.00394 * 154.39596 * 7 6 5 39 39 H 1.09000 * 109.46935 * 299.99256 * 11 9 8 40 40 H 1.08997 * 109.47233 * 60.00077 * 11 9 8 41 41 H 1.09005 * 109.46309 * 93.27678 * 13 12 11 42 42 H 1.09002 * 109.47037 * 213.26901 * 13 12 11 43 43 H 1.08997 * 109.47383 * 333.27698 * 13 12 11 44 44 H 0.96998 * 120.00103 * 179.97438 * 17 16 14 45 45 H 1.08990 * 109.47257 * 359.97438 * 25 24 22 46 46 H 1.09000 * 109.46880 * 119.99724 * 25 24 22 47 47 H 1.08997 * 109.46882 * 239.99394 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6525 -2.1328 1.1905 6 6 2.4926 -3.0336 0.6007 7 7 3.6786 -2.6285 0.0709 8 6 2.1149 -4.3868 0.5548 9 6 2.9512 -5.3566 -0.0381 10 8 4.0380 -5.0359 -0.4752 11 6 2.4955 -6.7902 -0.1290 12 7 3.5339 -7.5922 -0.7811 13 6 4.5784 -8.2317 0.0230 14 6 3.5281 -7.7440 -2.1419 15 1 3.0082 -7.0295 -2.7628 16 6 4.1907 -8.8162 -2.7236 17 7 4.6327 -9.8025 -1.9724 18 14 4.4548 -8.8594 -4.5722 19 1 3.8681 -7.6405 -5.1848 20 1 5.9102 -8.9076 -4.8633 21 1 3.7966 -10.0643 -5.1383 22 6 0.8222 -4.7589 1.1442 23 8 0.4445 -5.9159 1.1333 24 7 0.0623 -3.7916 1.6980 25 6 -1.2307 -4.1395 2.2925 26 6 0.4761 -2.5141 1.7125 27 8 -0.2386 -1.6731 2.2214 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6444 1.2952 37 1 3.7886 -1.7122 -0.2279 38 1 4.4154 -3.2550 -0.0044 39 1 2.3127 -7.1776 0.8733 40 1 1.5763 -6.8430 -0.7124 41 1 4.2751 -9.2493 0.2694 42 1 5.5089 -8.2571 -0.5441 43 1 4.7280 -7.6646 0.9417 44 1 5.0953 -10.5519 -2.3788 45 1 -1.4006 -5.2113 2.1911 46 1 -1.2293 -3.8699 3.3486 47 1 -2.0243 -3.5961 1.7798 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103472802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:26 Heat of formation + Delta-G solvation = -54.699161 kcal Electronic energy + Delta-G solvation = -31238.377177 eV Core-core repulsion = 27036.814120 eV Total energy + Delta-G solvation = -4201.563057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.58954 -40.70335 -40.35544 -38.86790 -37.26489 -36.74943 -35.90917 -34.73105 -33.24701 -32.26344 -29.37593 -28.26211 -28.11042 -27.83095 -27.47251 -25.35968 -24.23042 -23.41263 -21.70454 -20.99235 -20.73645 -18.96530 -18.75683 -18.68714 -18.35914 -17.34463 -17.11804 -16.96754 -16.55646 -16.26750 -16.08628 -15.86920 -15.73276 -15.60403 -15.04951 -14.76759 -14.70909 -14.43312 -14.07221 -13.91631 -13.74836 -13.61920 -13.30682 -13.16030 -13.03832 -12.92971 -12.78067 -12.53419 -12.32720 -12.22045 -12.20091 -11.97526 -11.92846 -11.84657 -11.74059 -11.26214 -10.94431 -10.79618 -10.68433 -10.39382 -9.33475 -8.71395 -7.78189 -5.24554 -0.19490 0.62245 0.72933 1.46088 1.47522 1.58745 1.59313 1.69398 2.33597 2.49687 2.53573 3.14234 3.36001 3.60924 3.68875 3.71032 3.80327 3.94799 4.03411 4.25600 4.38099 4.41105 4.46905 4.47659 4.59571 4.63609 4.74480 4.79742 4.80764 4.82326 4.88829 4.92329 5.00531 5.02672 5.11983 5.16791 5.34568 5.38893 5.40937 5.61203 5.71393 5.78405 5.93921 6.32372 6.35074 6.45341 6.83721 7.03317 7.19555 7.89521 8.34313 9.26671 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015297 B = 0.003403 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.964413 B = 8226.095285 C = 9172.110486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.140 4.140 4 C 0.092 3.908 5 N -0.530 5.530 6 C 0.565 3.435 7 N -0.784 5.784 8 C -0.460 4.460 9 C 0.405 3.595 10 O -0.509 6.509 11 C 0.127 3.873 12 N -0.607 5.607 13 C 0.188 3.812 14 C -0.250 4.250 15 H 0.061 0.939 16 C -0.058 4.058 17 N -0.942 5.942 18 Si 0.973 3.027 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.572 3.428 23 O -0.531 6.531 24 N -0.561 5.561 25 C 0.078 3.922 26 C 0.711 3.289 27 O -0.534 6.534 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.423 0.577 38 H 0.436 0.564 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.003 0.997 42 H 0.022 0.978 43 H 0.016 0.984 44 H 0.248 0.752 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 27.286 9.221 29.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 C -0.198 4.198 4 C -0.027 4.027 5 N -0.254 5.254 6 C 0.335 3.665 7 N -0.335 5.335 8 C -0.476 4.476 9 C 0.290 3.710 10 O -0.392 6.392 11 C 0.000 4.000 12 N -0.329 5.329 13 C 0.043 3.957 14 C -0.380 4.380 15 H 0.079 0.921 16 C -0.252 4.252 17 N -0.590 5.590 18 Si 0.801 3.199 19 H -0.194 1.194 20 H -0.215 1.215 21 H -0.216 1.216 22 C 0.369 3.631 23 O -0.408 6.408 24 N -0.305 5.305 25 C -0.062 4.062 26 C 0.414 3.586 27 O -0.407 6.407 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.145 0.855 37 H 0.258 0.742 38 H 0.281 0.719 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.021 0.979 42 H 0.040 0.960 43 H 0.035 0.965 44 H 0.057 0.943 45 H 0.115 0.885 46 H 0.110 0.890 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.775 27.182 9.305 29.518 hybrid contribution 0.269 -0.626 -1.059 1.259 sum -6.506 26.556 8.246 28.558 Atomic orbital electron populations 1.21831 0.95100 1.00524 1.02388 1.21594 0.96586 0.98464 0.96657 1.21747 1.02181 0.92753 1.03109 1.22578 1.03331 0.74556 1.02241 1.45035 1.17132 1.11347 1.51875 1.18077 0.81583 0.86686 0.80119 1.42935 1.11021 1.18694 1.60847 1.20194 1.02846 0.93064 1.31516 1.21159 0.84843 0.91467 0.73580 1.90181 1.23388 1.82153 1.43437 1.21033 0.91335 0.89821 0.97824 1.43915 1.28040 1.57436 1.03547 1.20447 0.90849 0.93405 0.91035 1.19438 1.30302 1.05099 0.83167 0.92138 1.25768 1.01975 0.95201 1.02253 1.70258 1.44015 1.09588 1.35133 0.85115 0.77202 0.77402 0.80184 1.19436 1.21518 1.21563 1.18022 0.83869 0.84679 0.76545 1.90857 1.73269 1.18737 1.57947 1.46212 1.22602 1.06828 1.54901 1.22048 0.80637 1.03833 0.99682 1.15393 0.81128 0.82724 0.79346 1.90999 1.52558 1.49232 1.47887 0.91828 0.92098 0.95533 0.90760 0.90423 0.91699 0.91571 0.86432 0.85532 0.74170 0.71887 0.90856 0.91528 0.97854 0.95966 0.96509 0.94297 0.88468 0.89037 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.89 71.98 0.57 -1.39 16 2 C -0.11 -1.02 3.05 -10.79 -0.03 -1.05 16 3 C -0.14 -0.64 9.19 71.98 0.66 0.02 16 4 C 0.09 0.86 4.35 86.38 0.38 1.24 16 5 N -0.53 -9.22 2.49 -653.52 -1.63 -10.85 16 6 C 0.57 12.30 7.53 133.09 1.00 13.30 16 7 N -0.78 -12.89 7.97 -53.92 -0.43 -13.32 16 8 C -0.46 -14.59 5.92 -19.74 -0.12 -14.71 16 9 C 0.41 16.56 6.98 26.39 0.18 16.74 16 10 O -0.51 -21.77 13.83 -3.58 -0.05 -21.82 16 11 C 0.13 6.13 4.35 85.63 0.37 6.50 16 12 N -0.61 -34.47 2.42 -731.29 -1.77 -36.24 16 13 C 0.19 10.46 8.96 127.77 1.15 11.61 16 14 C -0.25 -15.12 9.68 84.04 0.81 -14.31 16 15 H 0.06 3.62 7.85 -2.91 -0.02 3.60 16 16 C -0.06 -3.50 5.13 84.86 0.44 -3.06 16 17 N -0.94 -59.33 10.54 21.65 0.23 -59.11 16 18 Si 0.97 48.09 29.57 68.60 2.03 50.12 16 19 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 21 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 22 C 0.57 18.26 7.59 86.48 0.66 18.91 16 23 O -0.53 -20.28 13.09 -4.40 -0.06 -20.34 16 24 N -0.56 -14.04 2.95 -801.30 -2.37 -16.41 16 25 C 0.08 1.55 9.92 127.77 1.27 2.82 16 26 C 0.71 15.58 6.68 179.38 1.20 16.78 16 27 O -0.53 -11.96 13.60 -3.83 -0.05 -12.01 16 28 H 0.06 0.91 7.91 -2.38 -0.02 0.90 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.03 0.49 6.03 -2.39 -0.01 0.48 16 31 H 0.07 0.70 7.92 -2.39 -0.02 0.68 16 32 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.12 1.11 7.32 -2.39 -0.02 1.09 16 36 H 0.13 0.42 6.82 -2.39 -0.02 0.40 16 37 H 0.42 3.34 7.11 -92.70 -0.66 2.68 16 38 H 0.44 9.47 6.00 -92.71 -0.56 8.91 16 39 H 0.07 3.49 7.21 -2.39 -0.02 3.47 16 40 H 0.07 3.35 7.48 -2.39 -0.02 3.33 16 41 H 0.00 0.19 7.49 -2.38 -0.02 0.17 16 42 H 0.02 1.30 7.06 -2.39 -0.02 1.29 16 43 H 0.02 0.82 8.05 -2.39 -0.02 0.80 16 44 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 45 H 0.10 2.09 6.89 -2.39 -0.02 2.08 16 46 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 47 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -81.03 373.33 4.24 -76.79 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -0.20 Total: 9.77 kcal Atomic # 6 Polarization: 44.87 SS G_CDS: 8.53 Total: 53.40 kcal Atomic # 7 Polarization: -129.96 SS G_CDS: -5.96 Total: -135.92 kcal Atomic # 8 Polarization: -54.01 SS G_CDS: -0.16 Total: -54.17 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -81.03 4.24 -76.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103472802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.095 kcal (2) G-P(sol) polarization free energy of solvation -81.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds