Wall clock time and date at job start Tue Mar 31 2020 21:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47226 * 2 1 4 4 C 1.53005 * 109.47325 * 173.89817 * 3 2 1 5 5 C 1.53001 * 109.47177 * 168.53399 * 4 3 2 6 6 C 1.53003 * 109.47232 * 293.89863 * 3 2 1 7 7 N 1.46496 * 109.47077 * 287.31813 * 6 3 2 8 8 C 1.46507 * 119.99640 * 263.95606 * 7 6 3 9 9 C 1.50701 * 109.47108 * 323.04164 * 8 7 6 10 10 H 1.08002 * 119.99571 * 353.99393 * 9 8 7 11 11 C 1.37876 * 119.99910 * 173.99431 * 9 8 7 12 12 N 1.31518 * 119.99851 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99847 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47083 * 90.00478 * 13 11 9 15 15 H 1.48501 * 109.46924 * 209.99810 * 13 11 9 16 16 H 1.48497 * 109.47393 * 330.00074 * 13 11 9 17 17 C 1.34768 * 120.00370 * 83.95329 * 7 6 3 18 18 O 1.21632 * 119.99993 * 346.68012 * 17 7 6 19 19 C 1.47165 * 120.00207 * 166.67845 * 17 7 6 20 20 C 1.38410 * 126.88256 * 154.92237 * 19 17 7 21 21 N 1.48014 * 127.32265 * 0.02562 * 20 19 17 22 22 O 1.21792 * 119.99780 * 180.02562 * 21 20 19 23 23 O 1.21801 * 119.99676 * 359.72448 * 21 20 19 24 24 C 1.39676 * 105.35687 * 180.26019 * 20 19 17 25 25 N 1.30866 * 107.86043 * 359.62627 * 24 20 19 26 26 N 1.28443 * 110.92985 * 0.39315 * 25 24 20 27 27 C 1.46502 * 125.19440 * 179.78385 * 26 25 24 28 28 H 1.08998 * 109.47075 * 301.57853 * 1 2 3 29 29 H 1.08994 * 109.46967 * 61.57941 * 1 2 3 30 30 H 1.09006 * 109.47344 * 181.57517 * 1 2 3 31 31 H 1.09003 * 109.47338 * 239.99421 * 2 1 3 32 32 H 1.09001 * 109.47089 * 119.99888 * 2 1 3 33 33 H 1.08998 * 109.47257 * 53.89988 * 3 2 1 34 34 H 1.08997 * 109.47018 * 288.53685 * 4 3 2 35 35 H 1.09001 * 109.46553 * 48.53369 * 4 3 2 36 36 H 1.09003 * 109.46765 * 304.71755 * 5 4 3 37 37 H 1.08994 * 109.47109 * 64.71557 * 5 4 3 38 38 H 1.08996 * 109.47036 * 184.72423 * 5 4 3 39 39 H 1.09002 * 109.47218 * 167.31649 * 6 3 2 40 40 H 1.08996 * 109.46539 * 47.31379 * 6 3 2 41 41 H 1.08997 * 109.47039 * 83.04574 * 8 7 6 42 42 H 1.09004 * 109.46702 * 203.04859 * 8 7 6 43 43 H 0.97000 * 119.99526 * 179.97438 * 12 11 9 44 44 H 1.07990 * 126.06705 * 179.77763 * 24 20 19 45 45 H 1.08992 * 109.46665 * 313.65922 * 27 26 25 46 46 H 1.08999 * 109.46522 * 73.65286 * 27 26 25 47 47 H 0.98818 * 82.09546 * 76.76060 * 42 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5623 1.4452 0.1533 5 6 4.1010 2.8487 -0.1308 6 6 1.6590 2.1181 -1.3188 7 7 2.4925 1.5849 -2.3992 8 6 3.7027 2.3001 -2.8118 9 6 3.4571 3.7853 -2.7414 10 1 2.4693 4.1591 -2.5159 11 6 4.4934 4.6668 -2.9651 12 7 4.2792 5.9629 -2.9032 13 14 6.2017 4.0200 -3.3560 14 1 6.3474 3.8632 -4.8255 15 1 7.2201 4.9789 -2.8573 16 1 6.3958 2.7040 -2.6960 17 6 2.1460 0.4366 -3.0136 18 8 1.2936 -0.2810 -2.5257 19 6 2.7988 0.0508 -4.2749 20 6 2.9437 -1.2308 -4.7771 21 7 2.4769 -2.4937 -4.1624 22 8 2.6777 -3.5553 -4.7246 23 8 1.8967 -2.4718 -3.0916 24 6 3.6289 -1.0795 -5.9848 25 7 3.8513 0.1978 -6.1628 26 7 3.3838 0.8857 -5.1841 27 6 3.4649 2.3433 -5.0617 28 1 -0.3633 0.5381 0.8755 29 1 -0.3633 0.4891 -0.9038 30 1 -0.3634 -1.0273 0.0282 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5902 1.9868 0.8303 34 1 3.8256 1.1538 1.1701 35 1 3.9997 0.7384 -0.5519 36 1 3.7667 3.1736 -1.1161 37 1 3.7294 3.5404 0.6252 38 1 5.1905 2.8320 -0.1040 39 1 1.8168 3.1934 -1.2351 40 1 0.6098 1.9208 -1.5382 41 1 4.5252 2.0360 -2.1471 42 1 3.9582 2.0222 -3.8343 43 1 5.0084 6.5830 -3.0602 44 1 3.9209 -1.8751 -6.6541 45 1 4.4778 2.6716 -5.2948 46 1 2.7642 2.8057 -5.7569 47 1 3.2131 2.6370 -4.0427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119616490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:33 Heat of formation + Delta-G solvation = 203.783028 kcal Electronic energy + Delta-G solvation = -33137.321937 eV Core-core repulsion = 28946.967509 eV Total energy + Delta-G solvation = -4190.354428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -43.42819 -41.44558 -40.34514 -37.50459 -36.27017 -36.02092 -33.39919 -33.07760 -31.51758 -31.41378 -30.10272 -27.84879 -26.69044 -26.09036 -24.82463 -23.25736 -22.36430 -21.71114 -21.26486 -19.90696 -18.92066 -18.32281 -18.05060 -17.77257 -17.58306 -17.24807 -16.38807 -16.12739 -15.65376 -15.07548 -14.92898 -14.46682 -14.34503 -13.90080 -13.80352 -13.33961 -13.10950 -12.90544 -12.65473 -12.36579 -12.04483 -11.75226 -11.63248 -11.42230 -11.32445 -11.18144 -11.06346 -10.86906 -10.72567 -10.70477 -10.69655 -10.30084 -10.22588 -10.03541 -9.98096 -9.74524 -9.72554 -9.61496 -9.34496 -9.19733 -8.66890 -7.85230 -6.88490 -4.93198 0.27373 1.43333 1.49484 2.29805 2.41516 2.75070 2.88803 2.92791 3.03842 3.25088 3.72350 4.12534 4.22828 4.39984 4.65995 4.87314 5.13560 5.30610 5.38371 5.41461 5.44524 5.73149 5.80764 5.85358 5.95970 5.99937 6.08559 6.11269 6.17670 6.22790 6.30642 6.32310 6.41450 6.52528 6.56393 6.61526 6.62626 6.69184 6.74920 6.83643 6.90807 6.99932 7.11006 7.38544 7.57078 7.61433 7.82683 8.07731 8.17394 8.31309 8.63077 10.18330 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.006633 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.789124 B = 4220.320445 C = 6132.924501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 C -0.099 4.099 4 C -0.106 4.106 5 C -0.225 4.225 6 C 0.118 3.882 7 N -0.574 5.574 8 C 0.074 3.926 9 C -0.554 4.554 10 H 0.105 0.895 11 C 0.099 3.901 12 N -0.842 5.842 13 Si 0.848 3.152 14 H -0.264 1.264 15 H -0.270 1.270 16 H -0.253 1.253 17 C 0.558 3.442 18 O -0.469 6.469 19 C 0.071 3.929 20 C -0.129 4.129 21 N 0.063 4.937 22 O -0.191 6.191 23 O -0.110 6.110 24 C 0.065 3.935 25 N -0.272 5.272 26 N -0.239 5.239 27 C -0.073 4.073 28 H 0.035 0.965 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.156 0.844 37 H 0.036 0.964 38 H 0.031 0.969 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.112 0.888 43 H 0.280 0.720 44 H 0.206 0.794 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.896 -4.852 -0.873 5.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.172 4.172 3 C -0.119 4.119 4 C -0.144 4.144 5 C -0.280 4.280 6 C -0.003 4.003 7 N -0.306 5.306 8 C -0.045 4.045 9 C -0.589 4.589 10 H 0.123 0.877 11 C -0.113 4.113 12 N -0.474 5.474 13 Si 0.672 3.328 14 H -0.189 1.189 15 H -0.195 1.195 16 H -0.177 1.177 17 C 0.341 3.659 18 O -0.342 6.342 19 C -0.066 4.066 20 C -0.226 4.226 21 N 0.583 4.417 22 O -0.395 6.395 23 O -0.336 6.336 24 C -0.114 4.114 25 N -0.103 5.103 26 N -0.026 5.026 27 C -0.204 4.204 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.172 0.828 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.126 0.874 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.127 0.873 43 H 0.091 0.909 44 H 0.223 0.777 45 H 0.116 0.884 46 H 0.105 0.895 47 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -0.532 -3.486 -1.716 3.922 hybrid contribution 0.933 -0.999 0.392 1.422 sum 0.401 -4.485 -1.324 4.694 Atomic orbital electron populations 1.21619 0.96340 1.00779 1.00390 1.22046 0.96041 0.96089 1.03022 1.21616 0.96212 0.96781 0.97261 1.21432 0.94801 0.98607 0.99572 1.23365 0.99481 0.95419 1.09740 1.21836 0.93465 1.00183 0.84832 1.47752 1.26137 1.21742 1.35018 1.23160 0.85527 0.93859 1.01905 1.20726 0.99914 0.86591 1.51707 0.87710 1.24870 0.98717 0.94677 0.93052 1.69818 1.33905 1.01543 1.42113 0.87266 0.84532 0.80935 0.80029 1.18870 1.19502 1.17674 1.16890 0.84050 0.82608 0.82359 1.90880 1.31488 1.49686 1.62151 1.21906 1.00144 0.89143 0.95364 1.21406 1.15957 0.84797 1.00459 1.42272 0.98400 1.00634 1.00344 1.94498 1.62432 1.17216 1.65402 1.94696 1.38330 1.93484 1.07117 1.23543 0.98774 0.94021 0.95060 1.73520 1.19581 1.04077 1.13090 1.46839 1.34467 1.09714 1.11565 1.26707 1.05758 0.69273 1.18645 0.94595 0.92376 0.93521 0.88122 0.94098 0.91277 0.93980 0.93163 0.82773 0.94463 0.95020 0.87383 0.90851 0.93761 0.87337 0.90927 0.77695 0.88393 0.89482 0.71854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.04 37.16 0.34 -1.65 16 2 C -0.14 -2.16 4.84 -26.74 -0.13 -2.29 16 3 C -0.10 -1.56 2.41 -90.62 -0.22 -1.78 16 4 C -0.11 -1.77 4.92 -26.73 -0.13 -1.91 16 5 C -0.22 -4.02 7.91 37.16 0.29 -3.72 16 6 C 0.12 1.91 4.59 -4.04 -0.02 1.90 16 7 N -0.57 -9.90 1.94 -255.49 -0.50 -10.40 16 8 C 0.07 1.34 2.35 -5.19 -0.01 1.33 16 9 C -0.55 -10.84 4.89 -34.44 -0.17 -11.00 16 10 H 0.11 2.20 6.34 -52.49 -0.33 1.86 16 11 C 0.10 2.08 5.39 -17.82 -0.10 1.98 16 12 N -0.84 -19.24 13.96 55.43 0.77 -18.47 16 13 Si 0.85 16.24 25.93 -169.99 -4.41 11.83 16 14 H -0.26 -4.87 6.89 56.52 0.39 -4.48 16 15 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 16 H -0.25 -4.81 6.37 56.52 0.36 -4.45 16 17 C 0.56 10.07 6.77 -12.64 -0.09 9.99 16 18 O -0.47 -8.90 8.95 -18.49 -0.17 -9.06 16 19 C 0.07 1.25 6.39 -82.06 -0.52 0.73 16 20 C -0.13 -2.23 7.28 -79.35 -0.58 -2.81 16 21 N 0.06 1.16 4.45 34.25 0.15 1.32 16 22 O -0.19 -3.39 19.10 -29.46 -0.56 -3.95 16 23 O -0.11 -2.18 15.99 -36.98 -0.59 -2.77 16 24 C 0.06 0.96 11.83 -17.43 -0.21 0.75 16 25 N -0.27 -4.37 11.90 30.59 0.36 -4.01 16 26 N -0.24 -4.01 3.45 -135.67 -0.47 -4.48 16 27 C -0.07 -1.18 8.42 59.85 0.50 -0.67 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.90 5.73 -51.93 -0.30 0.60 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.85 4.41 -52.52 -0.23 1.62 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.90 7.07 -51.93 -0.37 0.53 16 36 H 0.16 2.91 0.87 -56.84 -0.05 2.86 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.11 1.81 4.95 -51.93 -0.26 1.55 16 40 H 0.07 1.15 5.85 -51.93 -0.30 0.85 16 41 H 0.04 0.86 4.03 -51.93 -0.21 0.65 16 42 H 0.11 1.95 1.48 -139.04 -0.21 1.74 16 43 H 0.28 6.07 8.31 -40.82 -0.34 5.73 16 44 H 0.21 2.26 8.06 -52.49 -0.42 1.84 16 45 H 0.10 1.58 6.26 -51.93 -0.33 1.25 16 46 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 47 H 0.27 4.61 0.99 -145.82 -0.14 4.46 16 LS Contribution 342.57 15.07 5.16 5.16 Total: -1.00 -22.71 342.57 -6.99 -29.70 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -5.72 Total: 14.28 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.03 Total: -9.17 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.33 Total: -36.03 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -1.32 Total: -15.78 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -4.41 Total: 11.83 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -22.71 -6.99 -29.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119616490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.488 kcal (2) G-P(sol) polarization free energy of solvation -22.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 203.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds