Wall clock time and date at job start Tue Mar 31 2020 21:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47226 * 2 1 4 4 C 1.53005 * 109.47325 * 173.89817 * 3 2 1 5 5 C 1.53001 * 109.47177 * 168.53399 * 4 3 2 6 6 C 1.53003 * 109.47232 * 293.89863 * 3 2 1 7 7 N 1.46496 * 109.47077 * 287.31813 * 6 3 2 8 8 C 1.46507 * 119.99640 * 263.95606 * 7 6 3 9 9 C 1.50701 * 109.47108 * 323.04164 * 8 7 6 10 10 H 1.08002 * 119.99571 * 353.99393 * 9 8 7 11 11 C 1.37876 * 119.99910 * 173.99431 * 9 8 7 12 12 N 1.31518 * 119.99851 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99847 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47083 * 90.00478 * 13 11 9 15 15 H 1.48501 * 109.46924 * 209.99810 * 13 11 9 16 16 H 1.48497 * 109.47393 * 330.00074 * 13 11 9 17 17 C 1.34768 * 120.00370 * 83.95329 * 7 6 3 18 18 O 1.21632 * 119.99993 * 346.68012 * 17 7 6 19 19 C 1.47165 * 120.00207 * 166.67845 * 17 7 6 20 20 C 1.38410 * 126.88256 * 154.92237 * 19 17 7 21 21 N 1.48014 * 127.32265 * 0.02562 * 20 19 17 22 22 O 1.21792 * 119.99780 * 180.02562 * 21 20 19 23 23 O 1.21801 * 119.99676 * 359.72448 * 21 20 19 24 24 C 1.39676 * 105.35687 * 180.26019 * 20 19 17 25 25 N 1.30866 * 107.86043 * 359.62627 * 24 20 19 26 26 N 1.28443 * 110.92985 * 0.39315 * 25 24 20 27 27 C 1.46502 * 125.19440 * 179.78385 * 26 25 24 28 28 H 1.08998 * 109.47075 * 301.57853 * 1 2 3 29 29 H 1.08994 * 109.46967 * 61.57941 * 1 2 3 30 30 H 1.09006 * 109.47344 * 181.57517 * 1 2 3 31 31 H 1.09003 * 109.47338 * 239.99421 * 2 1 3 32 32 H 1.09001 * 109.47089 * 119.99888 * 2 1 3 33 33 H 1.08998 * 109.47257 * 53.89988 * 3 2 1 34 34 H 1.08997 * 109.47018 * 288.53685 * 4 3 2 35 35 H 1.09001 * 109.46553 * 48.53369 * 4 3 2 36 36 H 1.09003 * 109.46765 * 304.71755 * 5 4 3 37 37 H 1.08994 * 109.47109 * 64.71557 * 5 4 3 38 38 H 1.08996 * 109.47036 * 184.72423 * 5 4 3 39 39 H 1.09002 * 109.47218 * 167.31649 * 6 3 2 40 40 H 1.08996 * 109.46539 * 47.31379 * 6 3 2 41 41 H 1.08997 * 109.47039 * 83.04574 * 8 7 6 42 42 H 1.09004 * 109.46702 * 203.04859 * 8 7 6 43 43 H 0.97000 * 119.99526 * 179.97438 * 12 11 9 44 44 H 1.07990 * 126.06705 * 179.77763 * 24 20 19 45 45 H 1.08992 * 109.46665 * 313.65922 * 27 26 25 46 46 H 1.08999 * 109.46522 * 73.65286 * 27 26 25 47 47 H 0.98818 * 82.09546 * 76.76060 * 42 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5623 1.4452 0.1533 5 6 4.1010 2.8487 -0.1308 6 6 1.6590 2.1181 -1.3188 7 7 2.4925 1.5849 -2.3992 8 6 3.7027 2.3001 -2.8118 9 6 3.4571 3.7853 -2.7414 10 1 2.4693 4.1591 -2.5159 11 6 4.4934 4.6668 -2.9651 12 7 4.2792 5.9629 -2.9032 13 14 6.2017 4.0200 -3.3560 14 1 6.3474 3.8632 -4.8255 15 1 7.2201 4.9789 -2.8573 16 1 6.3958 2.7040 -2.6960 17 6 2.1460 0.4366 -3.0136 18 8 1.2936 -0.2810 -2.5257 19 6 2.7988 0.0508 -4.2749 20 6 2.9437 -1.2308 -4.7771 21 7 2.4769 -2.4937 -4.1624 22 8 2.6777 -3.5553 -4.7246 23 8 1.8967 -2.4718 -3.0916 24 6 3.6289 -1.0795 -5.9848 25 7 3.8513 0.1978 -6.1628 26 7 3.3838 0.8857 -5.1841 27 6 3.4649 2.3433 -5.0617 28 1 -0.3633 0.5381 0.8755 29 1 -0.3633 0.4891 -0.9038 30 1 -0.3634 -1.0273 0.0282 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5902 1.9868 0.8303 34 1 3.8256 1.1538 1.1701 35 1 3.9997 0.7384 -0.5519 36 1 3.7667 3.1736 -1.1161 37 1 3.7294 3.5404 0.6252 38 1 5.1905 2.8320 -0.1040 39 1 1.8168 3.1934 -1.2351 40 1 0.6098 1.9208 -1.5382 41 1 4.5252 2.0360 -2.1471 42 1 3.9582 2.0222 -3.8343 43 1 5.0084 6.5830 -3.0602 44 1 3.9209 -1.8751 -6.6541 45 1 4.4778 2.6716 -5.2948 46 1 2.7642 2.8057 -5.7569 47 1 3.2131 2.6370 -4.0427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119616490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:32 Heat of formation + Delta-G solvation = 193.617029 kcal Electronic energy + Delta-G solvation = -33137.762768 eV Core-core repulsion = 28946.967509 eV Total energy + Delta-G solvation = -4190.795259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.74493 -42.85566 -41.73010 -38.94212 -37.62418 -37.42192 -34.88514 -34.49122 -32.83889 -32.79681 -31.52957 -29.20511 -28.11516 -27.43711 -26.17019 -24.71893 -23.77264 -23.03894 -22.60825 -21.24022 -20.27666 -19.74419 -19.46865 -19.14702 -19.06051 -18.64980 -17.76393 -17.52618 -17.03747 -16.44200 -16.39751 -15.79967 -15.71915 -15.19495 -15.17576 -14.81403 -14.46998 -14.24836 -14.04351 -13.72954 -13.38386 -13.17381 -12.97205 -12.89974 -12.73982 -12.61621 -12.44563 -12.23915 -12.15242 -12.13168 -12.09132 -11.81317 -11.60669 -11.45344 -11.36007 -11.11086 -11.08555 -10.95189 -10.77774 -10.67203 -10.06583 -9.26706 -8.51719 -6.55728 -1.13089 0.07620 0.13786 1.02750 1.08916 1.22429 1.35591 1.37590 1.63777 1.87782 2.15134 2.64800 2.89298 2.99814 3.34142 3.63076 3.76357 3.98543 4.06577 4.09479 4.14972 4.47865 4.51390 4.54677 4.62313 4.66084 4.72857 4.79969 4.85213 4.90252 4.94920 4.99848 5.02459 5.13647 5.18846 5.27008 5.28614 5.29921 5.38863 5.40962 5.62034 5.64882 5.77943 5.82779 6.12410 6.28359 6.35824 6.56476 6.64505 6.88946 7.03763 8.58210 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.006633 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.789124 B = 4220.320445 C = 6132.924501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.131 4.131 3 C -0.094 4.094 4 C -0.101 4.101 5 C -0.223 4.223 6 C 0.118 3.882 7 N -0.572 5.572 8 C 0.082 3.918 9 C -0.534 4.534 10 H 0.089 0.911 11 C 0.074 3.926 12 N -0.884 5.884 13 Si 0.876 3.124 14 H -0.248 1.248 15 H -0.279 1.279 16 H -0.252 1.252 17 C 0.555 3.445 18 O -0.479 6.479 19 C 0.056 3.944 20 C -0.141 4.141 21 N 0.065 4.935 22 O -0.162 6.162 23 O -0.158 6.158 24 C 0.084 3.916 25 N -0.276 5.276 26 N -0.239 5.239 27 C -0.075 4.075 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.035 0.965 36 H 0.146 0.854 37 H 0.039 0.961 38 H 0.024 0.976 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.035 0.965 42 H 0.123 0.877 43 H 0.280 0.720 44 H 0.246 0.754 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 -5.938 -1.738 6.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C -0.113 4.113 4 C -0.138 4.138 5 C -0.278 4.278 6 C -0.003 4.003 7 N -0.304 5.304 8 C -0.037 4.037 9 C -0.570 4.570 10 H 0.106 0.894 11 C -0.135 4.135 12 N -0.518 5.518 13 Si 0.699 3.301 14 H -0.172 1.172 15 H -0.204 1.204 16 H -0.175 1.175 17 C 0.338 3.662 18 O -0.352 6.352 19 C -0.081 4.081 20 C -0.239 4.239 21 N 0.582 4.418 22 O -0.376 6.376 23 O -0.372 6.372 24 C -0.094 4.094 25 N -0.106 5.106 26 N -0.025 5.025 27 C -0.206 4.206 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.163 0.837 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.138 0.862 43 H 0.090 0.910 44 H 0.262 0.738 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -0.261 -4.537 -2.500 5.187 hybrid contribution 0.824 -0.768 0.585 1.269 sum 0.564 -5.305 -1.915 5.668 Atomic orbital electron populations 1.21554 0.95392 1.00828 1.00762 1.21956 0.96838 0.95884 1.02133 1.21585 0.95561 0.96797 0.97395 1.21369 0.95341 0.97348 0.99787 1.23305 0.99060 0.96251 1.09233 1.21868 0.93659 0.99752 0.84991 1.47723 1.25930 1.21547 1.35184 1.23099 0.85516 0.92856 1.02253 1.20659 0.98878 0.87279 1.50182 0.89363 1.25220 1.00585 0.94530 0.93153 1.69886 1.34599 1.02534 1.44745 0.86815 0.82167 0.80281 0.80788 1.17240 1.20430 1.17533 1.16990 0.84043 0.82533 0.82608 1.90884 1.31988 1.49884 1.62485 1.21933 1.00813 0.89795 0.95526 1.21588 1.16755 0.84140 1.01383 1.42395 0.98162 1.01012 1.00208 1.94462 1.60864 1.17555 1.64736 1.94720 1.40563 1.93762 1.08152 1.24211 0.96668 0.94333 0.94184 1.73558 1.19789 1.04524 1.12765 1.46791 1.34413 1.09741 1.11600 1.26526 1.06485 0.69320 1.18291 0.92727 0.93313 0.93749 0.90366 0.93577 0.89716 0.92824 0.94631 0.83683 0.94210 0.95685 0.88040 0.90340 0.94795 0.86160 0.91013 0.73776 0.87899 0.87714 0.73019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.04 71.98 0.65 -3.01 16 2 C -0.13 -4.09 4.84 30.59 0.15 -3.94 16 3 C -0.09 -2.86 2.41 -10.79 -0.03 -2.88 16 4 C -0.10 -3.28 4.92 30.60 0.15 -3.13 16 5 C -0.22 -7.88 7.91 71.98 0.57 -7.31 16 6 C 0.12 3.79 4.59 86.38 0.40 4.19 16 7 N -0.57 -19.54 1.94 ******* -2.10 -21.64 16 8 C 0.08 2.91 2.35 85.63 0.20 3.11 16 9 C -0.53 -20.84 4.89 25.60 0.13 -20.71 16 10 H 0.09 3.74 6.34 -2.91 -0.02 3.72 16 11 C 0.07 3.07 5.39 84.65 0.46 3.52 16 12 N -0.88 -40.78 13.96 21.45 0.30 -40.48 16 13 Si 0.88 32.50 25.93 68.60 1.78 34.28 16 14 H -0.25 -8.55 6.89 99.48 0.69 -7.87 16 15 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 16 H -0.25 -9.21 6.37 99.48 0.63 -8.58 16 17 C 0.55 19.85 6.77 86.59 0.59 20.43 16 18 O -0.48 -18.19 8.95 18.57 0.17 -18.03 16 19 C 0.06 1.92 6.39 40.79 0.26 2.18 16 20 C -0.14 -4.62 7.28 36.76 0.27 -4.35 16 21 N 0.06 2.29 4.45 -45.54 -0.20 2.08 16 22 O -0.16 -5.37 19.10 18.90 0.36 -5.01 16 23 O -0.16 -6.23 15.99 26.07 0.42 -5.81 16 24 C 0.08 2.22 11.83 85.18 1.01 3.23 16 25 N -0.28 -8.08 11.90 -57.14 -0.68 -8.76 16 26 N -0.24 -7.56 3.45 -583.14 -2.01 -9.57 16 27 C -0.07 -2.30 8.42 127.77 1.08 -1.22 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.47 5.73 -2.39 -0.01 1.46 16 30 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.08 2.88 4.41 -11.83 -0.05 2.82 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.03 1.25 7.07 -2.39 -0.02 1.24 16 36 H 0.15 5.45 0.87 -7.00 -0.01 5.44 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 3.40 4.95 -2.39 -0.01 3.39 16 40 H 0.08 2.43 5.85 -2.39 -0.01 2.42 16 41 H 0.03 1.31 4.03 -2.39 -0.01 1.30 16 42 H 0.12 4.17 1.48 -84.22 -0.12 4.05 16 43 H 0.28 12.30 8.31 -92.71 -0.77 11.53 16 44 H 0.25 4.24 8.06 -2.92 -0.02 4.22 16 45 H 0.10 3.10 6.26 -2.39 -0.01 3.08 16 46 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 47 H 0.26 8.56 0.99 -90.58 -0.09 8.47 16 Total: -1.00 -47.90 342.57 4.60 -43.30 By element: Atomic # 1 Polarization: 38.83 SS G_CDS: 0.71 Total: 39.53 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 5.87 Total: -9.90 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -4.70 Total: -78.36 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: 0.94 Total: -28.85 kcal Atomic # 14 Polarization: 32.50 SS G_CDS: 1.78 Total: 34.28 kcal Total: -47.90 4.60 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119616490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.913 kcal (2) G-P(sol) polarization free energy of solvation -47.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds