Wall clock time and date at job start Tue Mar 31 2020 21:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00287 * 2 1 4 4 C 1.53004 * 109.47246 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.46822 * 64.99656 * 4 3 2 6 6 C 1.46509 * 120.00169 * 264.84851 * 5 4 3 7 7 C 1.50695 * 109.47088 * 263.15626 * 6 5 4 8 8 H 1.07999 * 120.00486 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99816 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99750 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00007 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46920 * 90.00048 * 11 9 7 13 13 H 1.48498 * 109.47015 * 210.00019 * 11 9 7 14 14 H 1.48498 * 109.46998 * 329.99881 * 11 9 7 15 15 C 1.34776 * 120.00151 * 84.85680 * 5 4 3 16 16 O 1.21367 * 119.99858 * 3.91509 * 15 5 4 17 17 C 1.49309 * 120.00052 * 183.92241 * 15 5 4 18 18 O 1.21386 * 120.00153 * 355.00417 * 17 15 5 19 19 N 1.34781 * 119.99662 * 175.00726 * 17 15 5 20 20 C 1.39203 * 119.99699 * 180.27432 * 19 17 15 21 21 C 1.36215 * 126.27165 * 359.74805 * 20 19 17 22 22 C 1.39695 * 107.86157 * 180.02562 * 21 20 19 23 23 N 1.30854 * 108.45520 * 359.97438 * 22 21 20 24 24 N 1.35848 * 126.27116 * 179.43778 * 20 19 17 25 25 C 1.46497 * 126.09817 * 359.96330 * 24 20 19 26 26 C 1.53010 * 109.47100 * 120.00033 * 25 24 20 27 27 C 1.52995 * 109.47322 * 239.99776 * 25 24 20 28 28 H 1.09000 * 109.47126 * 300.00416 * 1 2 3 29 29 H 1.09005 * 109.46931 * 59.99900 * 1 2 3 30 30 H 1.08995 * 109.47508 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47179 * 59.99831 * 3 2 1 32 32 H 1.09002 * 109.47037 * 299.99842 * 3 2 1 33 33 H 1.09002 * 109.46735 * 304.99861 * 4 3 2 34 34 H 1.08996 * 109.47232 * 184.99933 * 4 3 2 35 35 H 1.09000 * 109.46973 * 23.15292 * 6 5 4 36 36 H 1.09001 * 109.46786 * 143.15409 * 6 5 4 37 37 H 0.97003 * 119.99734 * 179.97438 * 10 9 7 38 38 H 0.96993 * 120.00243 * 359.97438 * 19 17 15 39 39 H 1.08006 * 126.07345 * 0.02562 * 21 20 19 40 40 H 1.07997 * 125.77196 * 180.02562 * 22 21 20 41 41 H 1.09003 * 109.47185 * 0.02562 * 25 24 20 42 42 H 1.09003 * 109.47062 * 59.99972 * 26 25 24 43 43 H 1.08992 * 109.46999 * 179.97438 * 26 25 24 44 44 H 1.09003 * 109.46816 * 300.00331 * 26 25 24 45 45 H 1.09002 * 109.47493 * 180.02562 * 27 25 24 46 46 H 1.09003 * 109.47239 * 300.00271 * 27 25 24 47 47 H 1.09002 * 109.47355 * 60.00206 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.2149 -0.8807 -1.3079 7 6 5.6846 -1.1552 -1.1193 8 1 6.3725 -0.3358 -0.9721 9 6 6.1511 -2.4526 -1.1347 10 7 7.4338 -2.6922 -0.9706 11 14 4.9612 -3.8700 -1.3886 12 1 4.8389 -4.1598 -2.8399 13 1 5.4689 -5.0747 -0.6843 14 1 3.6298 -3.5023 -0.8433 15 6 4.1635 1.3215 -2.3496 16 8 4.0354 2.5266 -2.2847 17 6 4.5280 0.6782 -3.6469 18 8 4.7448 -0.5152 -3.6928 19 7 4.6162 1.4228 -4.7669 20 6 4.9504 0.8222 -5.9774 21 6 5.2177 -0.4988 -6.1748 22 6 5.5068 -0.6796 -7.5295 23 7 5.4189 0.4796 -8.1302 24 7 5.0640 1.4451 -7.1793 25 6 4.8555 2.8724 -7.4348 26 6 6.1416 3.4834 -7.9951 27 6 3.7233 3.0490 -8.4486 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5684 0.8427 34 1 3.9786 2.1764 0.0902 35 1 3.6489 -1.3738 -0.5176 36 1 3.8951 -1.2636 -2.2770 37 1 7.7619 -3.6050 -0.9811 38 1 4.4426 2.3764 -4.7302 39 1 5.2079 -1.2696 -5.4184 40 1 5.7593 -1.6176 -8.0014 41 1 4.5913 3.3735 -6.5035 42 1 6.4062 2.9824 -8.9263 43 1 5.9864 4.5453 -8.1856 44 1 6.9482 3.3575 -7.2728 45 1 3.5685 4.1111 -8.6391 46 1 3.9880 2.5481 -9.3798 47 1 2.8071 2.6138 -8.0496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132858775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:51 Heat of formation + Delta-G solvation = -4.917827 kcal Electronic energy + Delta-G solvation = -30713.238148 eV Core-core repulsion = 26513.833771 eV Total energy + Delta-G solvation = -4199.404377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39950 -40.14530 -38.33376 -37.47940 -35.79210 -35.65286 -34.27018 -32.47322 -30.26391 -30.02059 -28.85393 -27.66596 -27.49840 -26.32881 -24.81533 -23.02098 -22.63223 -22.39158 -20.83075 -19.81106 -19.03819 -17.96463 -17.05690 -16.82134 -16.64249 -15.93143 -15.79216 -15.62037 -15.22080 -14.97499 -14.78315 -14.66661 -14.49858 -14.04459 -13.74846 -13.70222 -13.34817 -12.93555 -12.87964 -12.56424 -12.42698 -12.23829 -12.16536 -12.08850 -11.88838 -11.75440 -11.57811 -11.44464 -11.06393 -11.01421 -10.81808 -10.71268 -10.42299 -10.29647 -10.11932 -9.59933 -9.49416 -8.84075 -8.82634 -8.45145 -8.00609 -7.82442 -6.02938 -4.01212 1.59797 2.09294 2.30154 2.89047 3.15066 3.37955 3.43439 3.46563 3.70662 3.82352 3.94148 4.30086 4.48014 4.69086 4.70317 4.77839 5.04940 5.17498 5.27924 5.31110 5.32544 5.37396 5.41539 5.44115 5.45377 5.47956 5.52054 5.64020 5.67030 5.78637 5.81106 5.92966 5.96526 6.10982 6.12754 6.37876 6.44893 6.93089 6.99536 7.12085 7.14992 7.25295 7.38578 7.60675 7.84181 7.93665 8.10799 8.40258 8.54006 8.96864 9.57631 11.10181 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.004251 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.195862 B = 6585.140901 C = 8255.227051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.046 3.954 4 C 0.118 3.882 5 N -0.541 5.541 6 C 0.194 3.806 7 C -0.523 4.523 8 H 0.071 0.929 9 C 0.082 3.918 10 N -0.898 5.898 11 Si 0.872 3.128 12 H -0.271 1.271 13 H -0.289 1.289 14 H -0.263 1.263 15 C 0.516 3.484 16 O -0.559 6.559 17 C 0.503 3.497 18 O -0.426 6.426 19 N -0.636 5.636 20 C 0.311 3.689 21 C -0.277 4.277 22 C 0.059 3.941 23 N -0.294 5.294 24 N -0.387 5.387 25 C 0.156 3.844 26 C -0.160 4.160 27 C -0.159 4.159 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.264 0.736 38 H 0.414 0.586 39 H 0.176 0.824 40 H 0.184 0.816 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.005 11.095 -7.937 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.031 4.031 4 C -0.005 4.005 5 N -0.270 5.270 6 C 0.074 3.926 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.121 4.121 10 N -0.536 5.536 11 Si 0.699 3.301 12 H -0.197 1.197 13 H -0.215 1.215 14 H -0.188 1.188 15 C 0.298 3.702 16 O -0.440 6.440 17 C 0.284 3.716 18 O -0.292 6.292 19 N -0.287 5.287 20 C 0.092 3.908 21 C -0.308 4.308 22 C -0.127 4.127 23 N -0.116 5.116 24 N -0.177 5.177 25 C 0.055 3.945 26 C -0.218 4.218 27 C -0.216 4.216 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.250 0.750 39 H 0.193 0.807 40 H 0.201 0.799 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.601 11.218 -8.905 17.819 hybrid contribution -0.735 -0.496 0.730 1.148 sum -11.336 10.722 -8.175 17.615 Atomic orbital electron populations 1.22702 0.81763 1.02541 0.99433 1.88020 1.19028 1.27528 1.95283 1.23027 0.94694 0.85043 1.00386 1.21588 0.91386 1.00330 0.87219 1.47841 1.60167 1.11218 1.07798 1.20522 0.98211 0.73965 0.99893 1.21140 0.90725 0.94042 1.50239 0.91084 1.24709 0.94858 0.98455 0.94089 1.69894 1.13116 1.20558 1.50034 0.86894 0.81901 0.82131 0.79128 1.19651 1.21466 1.18804 1.19432 0.79383 0.86389 0.84985 1.90665 1.53910 1.13759 1.85692 1.20276 0.79687 0.87268 0.84375 1.90811 1.40924 1.13695 1.83801 1.42567 1.68668 1.12829 1.04640 1.18103 1.00696 0.91619 0.80410 1.21804 1.16255 0.94719 0.98056 1.23725 0.98929 0.96634 0.93413 1.77294 1.24279 0.97232 1.12829 1.48936 1.57613 1.07589 1.03578 1.21193 0.97144 0.76138 1.00069 1.22126 0.96257 1.00785 1.02599 1.22116 0.97360 1.02444 0.99720 0.94408 0.94498 0.89806 0.92435 0.93097 0.88321 0.88677 0.94163 0.91779 0.92648 0.74950 0.80685 0.79923 0.89049 0.90931 0.90842 0.91955 0.90838 0.90932 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.99 10.31 -35.23 -0.36 -6.35 16 3 C 0.05 0.65 6.25 37.16 0.23 0.88 16 4 C 0.12 1.94 5.74 -4.04 -0.02 1.92 16 5 N -0.54 -10.92 2.43 -175.62 -0.43 -11.35 16 6 C 0.19 4.53 3.72 -5.19 -0.02 4.51 16 7 C -0.52 -14.41 8.91 -34.44 -0.31 -14.71 16 8 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 10 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 11 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 15 C 0.52 10.15 7.63 -11.65 -0.09 10.06 16 16 O -0.56 -10.65 16.12 5.48 0.09 -10.56 16 17 C 0.50 9.85 7.73 -11.65 -0.09 9.76 16 18 O -0.43 -9.58 9.51 5.47 0.05 -9.53 16 19 N -0.64 -10.35 5.40 -11.80 -0.06 -10.41 16 20 C 0.31 5.18 7.68 -152.86 -1.17 4.01 16 21 C -0.28 -4.94 9.65 -39.77 -0.38 -5.33 16 22 C 0.06 0.90 12.00 -17.42 -0.21 0.69 16 23 N -0.29 -4.52 12.42 30.59 0.38 -4.14 16 24 N -0.39 -5.59 3.30 -53.80 -0.18 -5.77 16 25 C 0.16 1.66 3.70 -67.93 -0.25 1.41 16 26 C -0.16 -1.51 9.45 37.16 0.35 -1.16 16 27 C -0.16 -1.42 9.46 37.15 0.35 -1.07 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 1.63 8.03 -51.93 -0.42 1.22 16 34 H 0.10 1.45 7.53 -51.93 -0.39 1.06 16 35 H 0.04 0.95 6.83 -51.93 -0.35 0.60 16 36 H 0.06 1.56 4.80 -51.93 -0.25 1.31 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.41 5.65 7.03 -40.82 -0.29 5.36 16 39 H 0.18 3.53 5.83 -52.48 -0.31 3.23 16 40 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.09 0.84 6.84 -51.93 -0.36 0.49 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 390.95 15.07 5.89 5.89 Total: -1.00 -33.82 390.95 -6.14 -39.95 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.02 Total: 7.28 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: -0.60 Total: 14.69 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.48 Total: -58.20 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.22 Total: -26.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.82 -6.14 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132858775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.034 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds