Wall clock time and date at job start Tue Mar 31 2020 21:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00287 * 2 1 4 4 C 1.53004 * 109.47246 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.46822 * 64.99656 * 4 3 2 6 6 C 1.46509 * 120.00169 * 264.84851 * 5 4 3 7 7 C 1.50695 * 109.47088 * 263.15626 * 6 5 4 8 8 H 1.07999 * 120.00486 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99816 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99750 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00007 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46920 * 90.00048 * 11 9 7 13 13 H 1.48498 * 109.47015 * 210.00019 * 11 9 7 14 14 H 1.48498 * 109.46998 * 329.99881 * 11 9 7 15 15 C 1.34776 * 120.00151 * 84.85680 * 5 4 3 16 16 O 1.21367 * 119.99858 * 3.91509 * 15 5 4 17 17 C 1.49309 * 120.00052 * 183.92241 * 15 5 4 18 18 O 1.21386 * 120.00153 * 355.00417 * 17 15 5 19 19 N 1.34781 * 119.99662 * 175.00726 * 17 15 5 20 20 C 1.39203 * 119.99699 * 180.27432 * 19 17 15 21 21 C 1.36215 * 126.27165 * 359.74805 * 20 19 17 22 22 C 1.39695 * 107.86157 * 180.02562 * 21 20 19 23 23 N 1.30854 * 108.45520 * 359.97438 * 22 21 20 24 24 N 1.35848 * 126.27116 * 179.43778 * 20 19 17 25 25 C 1.46497 * 126.09817 * 359.96330 * 24 20 19 26 26 C 1.53010 * 109.47100 * 120.00033 * 25 24 20 27 27 C 1.52995 * 109.47322 * 239.99776 * 25 24 20 28 28 H 1.09000 * 109.47126 * 300.00416 * 1 2 3 29 29 H 1.09005 * 109.46931 * 59.99900 * 1 2 3 30 30 H 1.08995 * 109.47508 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47179 * 59.99831 * 3 2 1 32 32 H 1.09002 * 109.47037 * 299.99842 * 3 2 1 33 33 H 1.09002 * 109.46735 * 304.99861 * 4 3 2 34 34 H 1.08996 * 109.47232 * 184.99933 * 4 3 2 35 35 H 1.09000 * 109.46973 * 23.15292 * 6 5 4 36 36 H 1.09001 * 109.46786 * 143.15409 * 6 5 4 37 37 H 0.97003 * 119.99734 * 179.97438 * 10 9 7 38 38 H 0.96993 * 120.00243 * 359.97438 * 19 17 15 39 39 H 1.08006 * 126.07345 * 0.02562 * 21 20 19 40 40 H 1.07997 * 125.77196 * 180.02562 * 22 21 20 41 41 H 1.09003 * 109.47185 * 0.02562 * 25 24 20 42 42 H 1.09003 * 109.47062 * 59.99972 * 26 25 24 43 43 H 1.08992 * 109.46999 * 179.97438 * 26 25 24 44 44 H 1.09003 * 109.46816 * 300.00331 * 26 25 24 45 45 H 1.09002 * 109.47493 * 180.02562 * 27 25 24 46 46 H 1.09003 * 109.47239 * 300.00271 * 27 25 24 47 47 H 1.09002 * 109.47355 * 60.00206 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.2149 -0.8807 -1.3079 7 6 5.6846 -1.1552 -1.1193 8 1 6.3725 -0.3358 -0.9721 9 6 6.1511 -2.4526 -1.1347 10 7 7.4338 -2.6922 -0.9706 11 14 4.9612 -3.8700 -1.3886 12 1 4.8389 -4.1598 -2.8399 13 1 5.4689 -5.0747 -0.6843 14 1 3.6298 -3.5023 -0.8433 15 6 4.1635 1.3215 -2.3496 16 8 4.0354 2.5266 -2.2847 17 6 4.5280 0.6782 -3.6469 18 8 4.7448 -0.5152 -3.6928 19 7 4.6162 1.4228 -4.7669 20 6 4.9504 0.8222 -5.9774 21 6 5.2177 -0.4988 -6.1748 22 6 5.5068 -0.6796 -7.5295 23 7 5.4189 0.4796 -8.1302 24 7 5.0640 1.4451 -7.1793 25 6 4.8555 2.8724 -7.4348 26 6 6.1416 3.4834 -7.9951 27 6 3.7233 3.0490 -8.4486 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5684 0.8427 34 1 3.9786 2.1764 0.0902 35 1 3.6489 -1.3738 -0.5176 36 1 3.8951 -1.2636 -2.2770 37 1 7.7619 -3.6050 -0.9811 38 1 4.4426 2.3764 -4.7302 39 1 5.2079 -1.2696 -5.4184 40 1 5.7593 -1.6176 -8.0014 41 1 4.5913 3.3735 -6.5035 42 1 6.4062 2.9824 -8.9263 43 1 5.9864 4.5453 -8.1856 44 1 6.9482 3.3575 -7.2728 45 1 3.5685 4.1111 -8.6391 46 1 3.9880 2.5481 -9.3798 47 1 2.8071 2.6138 -8.0496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132858775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:50 Heat of formation + Delta-G solvation = -28.430864 kcal Electronic energy + Delta-G solvation = -30714.257750 eV Core-core repulsion = 26513.833771 eV Total energy + Delta-G solvation = -4200.423978 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.72142 -41.61005 -39.76042 -38.70461 -37.28142 -36.63870 -35.74357 -34.55713 -31.69894 -31.15690 -30.19059 -29.46504 -28.22854 -27.36444 -26.22416 -24.38527 -24.04980 -23.88467 -22.13189 -21.07486 -20.42798 -19.22752 -19.07454 -18.34121 -17.99823 -17.27306 -17.07512 -17.01900 -16.51248 -16.30292 -16.02251 -15.85395 -15.76176 -15.58210 -15.20161 -14.91357 -14.74224 -14.46767 -14.04166 -13.91968 -13.83899 -13.57767 -13.24595 -13.12237 -13.05994 -12.88430 -12.79798 -12.61156 -12.40200 -12.34161 -12.24351 -12.17501 -12.04564 -11.89879 -11.64964 -11.54859 -10.77259 -10.63387 -10.30918 -9.99066 -9.64399 -9.20300 -8.23909 -6.25730 0.10204 0.77821 0.96172 1.40145 1.44742 1.51487 1.66662 1.82671 2.19182 2.40275 2.41562 2.89907 3.14264 3.19026 3.39686 3.90676 3.95945 4.03673 4.08734 4.14913 4.25220 4.37719 4.43839 4.51766 4.53676 4.58738 4.66585 4.69814 4.74910 4.77835 4.78227 4.82949 4.84432 4.88921 5.05456 5.15763 5.20107 5.21949 5.42000 5.52982 5.70493 5.83319 6.02269 6.08035 6.26258 6.37158 6.60204 6.71226 6.72782 6.90716 7.36946 8.92852 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.004251 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.195862 B = 6585.140901 C = 8255.227051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.054 3.946 4 C 0.109 3.891 5 N -0.549 5.549 6 C 0.212 3.788 7 C -0.515 4.515 8 H 0.028 0.972 9 C 0.025 3.975 10 N -0.946 5.946 11 Si 0.935 3.065 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.242 1.242 15 C 0.515 3.485 16 O -0.551 6.551 17 C 0.500 3.500 18 O -0.462 6.462 19 N -0.618 5.618 20 C 0.300 3.700 21 C -0.304 4.304 22 C 0.059 3.941 23 N -0.296 5.296 24 N -0.377 5.377 25 C 0.141 3.859 26 C -0.154 4.154 27 C -0.151 4.151 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.265 0.735 38 H 0.427 0.573 39 H 0.149 0.851 40 H 0.211 0.789 41 H 0.108 0.892 42 H 0.062 0.938 43 H 0.106 0.894 44 H 0.046 0.954 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.261 12.597 -8.634 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.023 4.023 4 C -0.013 4.013 5 N -0.278 5.278 6 C 0.090 3.910 7 C -0.554 4.554 8 H 0.047 0.953 9 C -0.173 4.173 10 N -0.587 5.587 11 Si 0.759 3.241 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.165 1.165 15 C 0.297 3.703 16 O -0.432 6.432 17 C 0.282 3.718 18 O -0.331 6.331 19 N -0.269 5.269 20 C 0.080 3.920 21 C -0.336 4.336 22 C -0.126 4.126 23 N -0.118 5.118 24 N -0.167 5.167 25 C 0.041 3.959 26 C -0.212 4.212 27 C -0.209 4.209 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.266 0.734 39 H 0.166 0.834 40 H 0.228 0.772 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.124 0.876 44 H 0.066 0.934 45 H 0.124 0.876 46 H 0.081 0.919 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.891 12.806 -9.616 20.558 hybrid contribution 0.001 -0.791 0.904 1.201 sum -12.890 12.015 -8.712 19.657 Atomic orbital electron populations 1.22891 0.79694 1.03480 1.00825 1.87959 1.21382 1.28409 1.95574 1.22958 0.92511 0.84930 1.01901 1.21868 0.93633 1.00376 0.85387 1.47828 1.60602 1.10130 1.09263 1.20093 0.95113 0.76169 0.99576 1.21294 0.92374 0.92774 1.48956 0.95339 1.25541 0.96388 1.01354 0.93984 1.70037 1.15291 1.21218 1.52152 0.85899 0.80565 0.78729 0.78933 1.19760 1.20929 1.16532 1.19455 0.79324 0.86498 0.85010 1.90655 1.53647 1.13203 1.85688 1.20394 0.79315 0.87049 0.85085 1.90806 1.42863 1.15078 1.84352 1.42303 1.67521 1.13205 1.03914 1.18093 1.01086 0.91770 0.81100 1.21726 1.18023 0.94998 0.98804 1.24101 0.98395 0.97774 0.92364 1.77258 1.24026 0.97391 1.13157 1.49286 1.56239 1.08818 1.02368 1.21714 0.98553 0.74020 1.01648 1.22107 0.95005 1.02625 1.01460 1.22085 0.96014 1.04400 0.98402 0.92220 0.93828 0.89225 0.88992 0.93274 0.88820 0.87601 0.93783 0.92136 0.92610 0.73381 0.83382 0.77202 0.87431 0.91888 0.87555 0.93434 0.87626 0.91928 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.80 16 2 O -0.41 -12.22 10.31 -148.98 -1.54 -13.76 16 3 C 0.05 1.41 6.25 71.98 0.45 1.86 16 4 C 0.11 3.49 5.74 86.38 0.50 3.98 16 5 N -0.55 -22.09 2.43 -827.90 -2.02 -24.10 16 6 C 0.21 9.96 3.72 85.63 0.32 10.28 16 7 C -0.52 -29.27 8.91 25.60 0.23 -29.04 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 9 C 0.03 1.48 5.47 84.66 0.46 1.94 16 10 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 11 Si 0.93 44.88 27.47 68.60 1.88 46.77 16 12 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.24 -10.68 6.54 99.48 0.65 -10.03 16 15 C 0.52 20.14 7.63 87.23 0.67 20.80 16 16 O -0.55 -20.30 16.12 -3.30 -0.05 -20.35 16 17 C 0.50 19.84 7.73 87.22 0.67 20.52 16 18 O -0.46 -21.44 9.51 -3.36 -0.03 -21.47 16 19 N -0.62 -19.94 5.40 -309.58 -1.67 -21.62 16 20 C 0.30 9.98 7.68 131.25 1.01 10.99 16 21 C -0.30 -11.10 9.65 22.15 0.21 -10.89 16 22 C 0.06 1.80 12.00 85.19 1.02 2.82 16 23 N -0.30 -8.84 12.42 -57.13 -0.71 -9.55 16 24 N -0.38 -10.52 3.30 -324.13 -1.07 -11.59 16 25 C 0.14 2.69 3.70 44.99 0.17 2.85 16 26 C -0.15 -2.58 9.45 71.99 0.68 -1.90 16 27 C -0.15 -2.32 9.46 71.98 0.68 -1.64 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 3.06 8.03 -2.39 -0.02 3.04 16 34 H 0.11 3.11 7.53 -2.39 -0.02 3.09 16 35 H 0.04 2.05 6.83 -2.39 -0.02 2.04 16 36 H 0.06 2.97 4.80 -2.46 -0.01 2.95 16 37 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.43 11.13 7.03 -92.71 -0.65 10.48 16 39 H 0.15 6.30 5.83 -2.91 -0.02 6.29 16 40 H 0.21 4.87 8.06 -2.91 -0.02 4.84 16 41 H 0.11 1.70 6.84 -2.39 -0.02 1.68 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -75.60 390.95 3.69 -71.90 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.28 Total: 28.63 kcal Atomic # 6 Polarization: 26.06 SS G_CDS: 8.32 Total: 34.37 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -5.17 Total: -126.09 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: -1.62 Total: -55.58 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -75.60 3.69 -71.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132858775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.473 kcal (2) G-P(sol) polarization free energy of solvation -75.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds