Wall clock time and date at job start Tue Mar 31 2020 21:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47049 * 2 1 4 4 C 1.52995 * 109.46886 * 187.34981 * 3 2 1 5 5 C 1.52999 * 109.46894 * 67.35388 * 3 2 1 6 6 N 1.46498 * 109.47377 * 307.35491 * 3 2 1 7 7 C 1.46499 * 120.00045 * 130.67754 * 6 3 2 8 8 C 1.50698 * 109.47111 * 266.42006 * 7 6 3 9 9 H 1.07998 * 120.00036 * 4.29329 * 8 7 6 10 10 C 1.37879 * 119.99627 * 184.29632 * 8 7 6 11 11 N 1.31510 * 120.00467 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99700 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47052 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47083 * 119.99749 * 12 10 8 15 15 H 1.48500 * 109.47202 * 240.00151 * 12 10 8 16 16 C 1.34778 * 119.99610 * 310.67880 * 6 3 2 17 17 O 1.21281 * 119.99889 * 185.04647 * 16 6 3 18 18 C 1.50700 * 120.00061 * 5.03797 * 16 6 3 19 19 N 1.46501 * 109.46895 * 193.70190 * 18 16 6 20 20 C 1.36883 * 126.39785 * 264.97317 * 19 18 16 21 21 C 1.34668 * 106.81829 * 180.02562 * 20 19 18 22 22 N 1.48026 * 125.99432 * 180.02562 * 21 20 19 23 23 O 1.21802 * 120.00228 * 180.02562 * 22 21 20 24 24 O 1.21806 * 119.99617 * 0.02562 * 22 21 20 25 25 N 1.34128 * 108.01904 * 0.02562 * 21 20 19 26 26 C 1.30498 * 109.25782 * 359.97438 * 25 21 20 27 27 C 1.50700 * 125.65041 * 180.02562 * 26 25 21 28 28 H 1.08998 * 109.47199 * 185.39289 * 1 2 3 29 29 H 1.08996 * 109.47054 * 305.39632 * 1 2 3 30 30 H 1.09002 * 109.46906 * 65.38986 * 1 2 3 31 31 H 1.09004 * 109.47247 * 240.00238 * 2 1 3 32 32 H 1.08997 * 109.47094 * 119.99887 * 2 1 3 33 33 H 1.09007 * 109.47004 * 191.13941 * 4 3 2 34 34 H 1.08998 * 109.47349 * 311.13614 * 4 3 2 35 35 H 1.08997 * 109.47411 * 71.14218 * 4 3 2 36 36 H 1.09005 * 109.47370 * 296.41934 * 5 3 2 37 37 H 1.09007 * 109.47472 * 56.41600 * 5 3 2 38 38 H 1.08999 * 109.47272 * 176.42197 * 5 3 2 39 39 H 1.08998 * 109.46829 * 26.42291 * 7 6 3 40 40 H 1.09003 * 109.46637 * 146.41842 * 7 6 3 41 41 H 0.96997 * 120.00350 * 180.02562 * 11 10 8 42 42 H 1.09001 * 109.46623 * 73.70705 * 18 16 6 43 43 H 1.08991 * 109.47396 * 313.70704 * 18 16 6 44 44 H 1.08003 * 126.59562 * 0.03082 * 20 19 18 45 45 H 1.08999 * 109.47456 * 89.97623 * 27 26 25 46 46 H 1.09007 * 109.47039 * 209.97021 * 27 26 25 47 47 H 1.09000 * 109.47260 * 329.96861 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5588 1.4465 -0.1845 5 6 1.6863 2.1085 1.3313 6 7 1.4127 2.1823 -1.0979 7 6 0.7955 3.4865 -0.8439 8 6 -0.6741 3.3013 -0.5666 9 1 -1.0918 2.3070 -0.5098 10 6 -1.4854 4.4013 -0.3856 11 7 -0.9769 5.6121 -0.4553 12 14 -3.3070 4.1717 -0.0412 13 1 -3.6267 2.7218 -0.0138 14 1 -3.6427 4.7780 1.2721 15 1 -4.0998 4.8328 -1.1088 16 6 1.4034 1.6631 -2.3416 17 8 0.9666 2.3138 -3.2671 18 6 1.9359 0.2740 -2.5822 19 7 2.1221 0.0647 -4.0201 20 6 1.2305 -0.5211 -4.8778 21 6 1.7994 -0.5105 -6.0984 22 7 1.1988 -1.0414 -7.3428 23 8 1.8136 -0.9752 -8.3922 24 8 0.0898 -1.5444 -7.3173 25 7 3.0058 0.0655 -5.9888 26 6 3.2058 0.4127 -4.7469 27 6 4.4413 1.0900 -4.2123 28 1 -0.3633 -1.0231 0.0966 29 1 -0.3633 0.5952 0.8377 30 1 -0.3633 0.4280 -0.9343 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9461 2.4464 0.0116 34 1 4.0111 0.7390 0.5104 35 1 3.8014 1.1570 -1.2070 36 1 0.6025 2.1629 1.4338 37 1 2.0999 1.5223 2.1520 38 1 2.1046 3.1147 1.3567 39 1 1.2722 3.9522 0.0187 40 1 0.9228 4.1250 -1.7181 41 1 -1.5476 6.3860 -0.3276 42 1 1.2266 -0.4587 -2.1972 43 1 2.8916 0.1577 -2.0713 44 1 0.2576 -0.9158 -4.6245 45 1 4.3178 2.1713 -4.2725 46 1 4.5941 0.7992 -3.1729 47 1 5.3055 0.7894 -4.8045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187510009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:21 Heat of formation + Delta-G solvation = 50.433175 kcal Electronic energy + Delta-G solvation = -31435.030683 eV Core-core repulsion = 27238.026506 eV Total energy + Delta-G solvation = -4197.004177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.07847 -41.65052 -40.33317 -37.21168 -36.39947 -34.78164 -33.33295 -32.44170 -31.99301 -30.70878 -29.67738 -28.49704 -27.26957 -26.58226 -25.39112 -23.54575 -23.00634 -21.81375 -21.40687 -20.46500 -19.06137 -18.70217 -18.37142 -17.51922 -17.15046 -16.82269 -16.26445 -15.71184 -15.35966 -15.00599 -14.89005 -14.75084 -14.26835 -14.10015 -13.81956 -13.37637 -13.09133 -13.05326 -12.75481 -12.63283 -12.45339 -12.35174 -12.07125 -11.73017 -11.55398 -11.49336 -11.30959 -11.27845 -11.18445 -11.06375 -11.02046 -10.78359 -10.68317 -10.62983 -10.58568 -10.29490 -10.20359 -9.74167 -9.34423 -9.10869 -8.58103 -7.99162 -6.20607 -4.25492 0.30974 1.18655 1.54020 2.19171 2.54309 2.81350 3.17877 3.27524 3.27865 3.43604 3.94970 4.14765 4.22867 4.28144 4.39940 4.51682 4.65076 4.66805 4.86103 4.98103 5.01181 5.15016 5.20480 5.24492 5.42401 5.46542 5.48717 5.52998 5.59770 5.64491 5.74686 5.86654 5.95705 5.97116 6.08570 6.24582 6.37291 6.44452 6.52374 6.71341 6.79132 7.17442 7.19412 7.27854 7.74928 7.89763 7.99793 8.04584 8.52878 8.79471 9.40127 10.87618 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011682 B = 0.003900 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.337314 B = 7177.906980 C = 8312.832792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.158 4.158 3 C 0.157 3.843 4 C -0.167 4.167 5 C -0.148 4.148 6 N -0.573 5.573 7 C 0.243 3.757 8 C -0.529 4.529 9 H 0.064 0.936 10 C 0.064 3.936 11 N -0.891 5.891 12 Si 0.893 3.107 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.494 3.506 17 O -0.519 6.519 18 C 0.058 3.942 19 N -0.426 5.426 20 C 0.078 3.922 21 C 0.040 3.960 22 N 0.071 4.929 23 O -0.140 6.140 24 O -0.167 6.167 25 N -0.449 5.449 26 C 0.254 3.746 27 C -0.074 4.074 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.264 0.736 42 H 0.139 0.861 43 H 0.132 0.868 44 H 0.204 0.796 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.854 -12.837 3.971 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.195 4.195 3 C 0.072 3.928 4 C -0.224 4.224 5 C -0.205 4.205 6 N -0.306 5.306 7 C 0.125 3.875 8 C -0.567 4.567 9 H 0.082 0.918 10 C -0.138 4.138 11 N -0.529 5.529 12 Si 0.721 3.279 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.209 1.209 16 C 0.277 3.723 17 O -0.395 6.395 18 C -0.066 4.066 19 N -0.106 5.106 20 C -0.065 4.065 21 C -0.170 4.170 22 N 0.591 4.409 23 O -0.360 6.360 24 O -0.376 6.376 25 N -0.169 5.169 26 C -0.011 4.011 27 C -0.132 4.132 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.157 0.843 43 H 0.150 0.850 44 H 0.220 0.780 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.337 -11.875 3.602 16.808 hybrid contribution -1.911 -0.221 0.573 2.007 sum 9.426 -12.095 4.175 15.893 Atomic orbital electron populations 1.21921 0.94295 1.00911 1.04274 1.22615 0.98089 0.96034 1.02808 1.20515 0.91433 0.91568 0.89328 1.22464 0.95587 1.03323 1.01075 1.22096 1.04784 1.00365 0.93285 1.48397 1.54828 1.22048 1.05300 1.19447 0.92650 0.77440 0.97941 1.21469 0.92983 0.93149 1.49123 0.91765 1.24914 0.98671 0.95068 0.95187 1.69921 1.35931 0.97761 1.49296 0.86520 0.85202 0.78283 0.77895 1.19782 1.20926 1.20884 1.19944 0.81014 0.86917 0.84417 1.90795 1.46201 1.60592 1.41938 1.23435 1.06259 1.00532 0.76414 1.45419 1.13701 1.42026 1.09498 1.22278 0.96982 0.99220 0.88035 1.20440 0.96620 1.14578 0.85331 1.42210 0.99881 0.97951 1.00821 1.94556 1.62840 1.60632 1.18004 1.94551 1.05035 1.45522 1.92537 1.69666 1.14639 1.15228 1.17391 1.23379 0.91931 1.00767 0.85022 1.20401 0.90785 1.00943 1.01096 0.93350 0.90901 0.91943 0.91219 0.90484 0.91300 0.91281 0.93125 0.89447 0.92580 0.91548 0.94069 0.93934 0.92664 0.84349 0.85049 0.77955 0.88678 0.90066 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.11 37.16 0.30 -1.61 16 2 C -0.16 -1.51 4.26 -26.73 -0.11 -1.63 16 3 C 0.16 1.88 0.71 -131.82 -0.09 1.79 16 4 C -0.17 -1.50 8.44 37.15 0.31 -1.18 16 5 C -0.15 -1.92 7.06 37.16 0.26 -1.66 16 6 N -0.57 -9.55 1.74 -160.18 -0.28 -9.83 16 7 C 0.24 5.43 4.52 -5.19 -0.02 5.40 16 8 C -0.53 -12.99 8.43 -34.44 -0.29 -13.28 16 9 H 0.06 1.54 5.79 -52.49 -0.30 1.24 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -24.65 13.29 55.43 0.74 -23.92 16 12 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 16 C 0.49 8.32 6.14 -10.98 -0.07 8.25 16 17 O -0.52 -11.65 16.10 5.56 0.09 -11.56 16 18 C 0.06 0.65 3.91 -5.19 -0.02 0.63 16 19 N -0.43 -5.57 2.28 -115.19 -0.26 -5.83 16 20 C 0.08 1.08 11.25 -16.56 -0.19 0.90 16 21 C 0.04 0.65 8.02 -145.54 -1.17 -0.52 16 22 N 0.07 1.23 4.45 32.62 0.15 1.37 16 23 O -0.14 -2.54 19.24 -29.46 -0.57 -3.11 16 24 O -0.17 -2.79 19.02 -29.46 -0.56 -3.35 16 25 N -0.45 -7.36 11.23 -7.88 -0.09 -7.45 16 26 C 0.25 3.44 7.90 -155.42 -1.23 2.21 16 27 C -0.07 -0.69 10.19 36.01 0.37 -0.32 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 1.01 6.34 -51.93 -0.33 0.68 16 30 H 0.06 0.94 5.50 -51.93 -0.29 0.65 16 31 H 0.07 0.54 3.52 -51.93 -0.18 0.36 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 34 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 35 H 0.05 0.40 4.55 -51.93 -0.24 0.17 16 36 H 0.09 1.37 5.63 -51.93 -0.29 1.08 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.94 6.72 -51.93 -0.35 0.59 16 39 H 0.04 0.92 5.87 -51.93 -0.30 0.62 16 40 H 0.04 1.14 7.47 -51.93 -0.39 0.75 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.14 1.30 5.45 -51.93 -0.28 1.02 16 43 H 0.13 1.08 3.42 -51.93 -0.18 0.90 16 44 H 0.20 2.24 8.06 -52.48 -0.42 1.81 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.08 0.53 6.32 -51.93 -0.33 0.20 16 47 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -33.55 372.44 -8.21 -41.76 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.97 Total: 0.30 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -2.04 Total: 0.58 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.25 Total: -45.65 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -1.04 Total: -18.01 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.55 -8.21 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187510009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.196 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds