Wall clock time and date at job start Tue Mar 31 2020 21:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47049 * 2 1 4 4 C 1.52995 * 109.46886 * 187.34981 * 3 2 1 5 5 C 1.52999 * 109.46894 * 67.35388 * 3 2 1 6 6 N 1.46498 * 109.47377 * 307.35491 * 3 2 1 7 7 C 1.46499 * 120.00045 * 130.67754 * 6 3 2 8 8 C 1.50698 * 109.47111 * 266.42006 * 7 6 3 9 9 H 1.07998 * 120.00036 * 4.29329 * 8 7 6 10 10 C 1.37879 * 119.99627 * 184.29632 * 8 7 6 11 11 N 1.31510 * 120.00467 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99700 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47052 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47083 * 119.99749 * 12 10 8 15 15 H 1.48500 * 109.47202 * 240.00151 * 12 10 8 16 16 C 1.34778 * 119.99610 * 310.67880 * 6 3 2 17 17 O 1.21281 * 119.99889 * 185.04647 * 16 6 3 18 18 C 1.50700 * 120.00061 * 5.03797 * 16 6 3 19 19 N 1.46501 * 109.46895 * 193.70190 * 18 16 6 20 20 C 1.36883 * 126.39785 * 264.97317 * 19 18 16 21 21 C 1.34668 * 106.81829 * 180.02562 * 20 19 18 22 22 N 1.48026 * 125.99432 * 180.02562 * 21 20 19 23 23 O 1.21802 * 120.00228 * 180.02562 * 22 21 20 24 24 O 1.21806 * 119.99617 * 0.02562 * 22 21 20 25 25 N 1.34128 * 108.01904 * 0.02562 * 21 20 19 26 26 C 1.30498 * 109.25782 * 359.97438 * 25 21 20 27 27 C 1.50700 * 125.65041 * 180.02562 * 26 25 21 28 28 H 1.08998 * 109.47199 * 185.39289 * 1 2 3 29 29 H 1.08996 * 109.47054 * 305.39632 * 1 2 3 30 30 H 1.09002 * 109.46906 * 65.38986 * 1 2 3 31 31 H 1.09004 * 109.47247 * 240.00238 * 2 1 3 32 32 H 1.08997 * 109.47094 * 119.99887 * 2 1 3 33 33 H 1.09007 * 109.47004 * 191.13941 * 4 3 2 34 34 H 1.08998 * 109.47349 * 311.13614 * 4 3 2 35 35 H 1.08997 * 109.47411 * 71.14218 * 4 3 2 36 36 H 1.09005 * 109.47370 * 296.41934 * 5 3 2 37 37 H 1.09007 * 109.47472 * 56.41600 * 5 3 2 38 38 H 1.08999 * 109.47272 * 176.42197 * 5 3 2 39 39 H 1.08998 * 109.46829 * 26.42291 * 7 6 3 40 40 H 1.09003 * 109.46637 * 146.41842 * 7 6 3 41 41 H 0.96997 * 120.00350 * 180.02562 * 11 10 8 42 42 H 1.09001 * 109.46623 * 73.70705 * 18 16 6 43 43 H 1.08991 * 109.47396 * 313.70704 * 18 16 6 44 44 H 1.08003 * 126.59562 * 0.03082 * 20 19 18 45 45 H 1.08999 * 109.47456 * 89.97623 * 27 26 25 46 46 H 1.09007 * 109.47039 * 209.97021 * 27 26 25 47 47 H 1.09000 * 109.47260 * 329.96861 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5588 1.4465 -0.1845 5 6 1.6863 2.1085 1.3313 6 7 1.4127 2.1823 -1.0979 7 6 0.7955 3.4865 -0.8439 8 6 -0.6741 3.3013 -0.5666 9 1 -1.0918 2.3070 -0.5098 10 6 -1.4854 4.4013 -0.3856 11 7 -0.9769 5.6121 -0.4553 12 14 -3.3070 4.1717 -0.0412 13 1 -3.6267 2.7218 -0.0138 14 1 -3.6427 4.7780 1.2721 15 1 -4.0998 4.8328 -1.1088 16 6 1.4034 1.6631 -2.3416 17 8 0.9666 2.3138 -3.2671 18 6 1.9359 0.2740 -2.5822 19 7 2.1221 0.0647 -4.0201 20 6 1.2305 -0.5211 -4.8778 21 6 1.7994 -0.5105 -6.0984 22 7 1.1988 -1.0414 -7.3428 23 8 1.8136 -0.9752 -8.3922 24 8 0.0898 -1.5444 -7.3173 25 7 3.0058 0.0655 -5.9888 26 6 3.2058 0.4127 -4.7469 27 6 4.4413 1.0900 -4.2123 28 1 -0.3633 -1.0231 0.0966 29 1 -0.3633 0.5952 0.8377 30 1 -0.3633 0.4280 -0.9343 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9461 2.4464 0.0116 34 1 4.0111 0.7390 0.5104 35 1 3.8014 1.1570 -1.2070 36 1 0.6025 2.1629 1.4338 37 1 2.0999 1.5223 2.1520 38 1 2.1046 3.1147 1.3567 39 1 1.2722 3.9522 0.0187 40 1 0.9228 4.1250 -1.7181 41 1 -1.5476 6.3860 -0.3276 42 1 1.2266 -0.4587 -2.1972 43 1 2.8916 0.1577 -2.0713 44 1 0.2576 -0.9158 -4.6245 45 1 4.3178 2.1713 -4.2725 46 1 4.5941 0.7992 -3.1729 47 1 5.3055 0.7894 -4.8045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187510009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:21 Heat of formation + Delta-G solvation = 30.922329 kcal Electronic energy + Delta-G solvation = -31435.876736 eV Core-core repulsion = 27238.026506 eV Total energy + Delta-G solvation = -4197.850231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.17882 -42.92875 -41.54440 -38.47303 -37.71636 -36.00840 -35.02403 -33.45134 -33.37371 -31.68666 -30.90629 -29.56370 -28.61503 -27.77193 -26.52447 -24.85690 -24.32721 -23.01686 -22.55871 -21.53816 -20.24558 -19.90578 -19.64981 -18.83552 -18.70383 -18.13402 -17.51216 -17.00958 -16.53368 -16.45582 -16.02320 -15.89915 -15.57229 -15.22130 -14.80438 -14.39723 -14.31783 -14.11444 -13.86270 -13.64272 -13.57247 -13.34473 -13.17477 -12.94987 -12.92586 -12.83081 -12.68823 -12.58780 -12.44910 -12.37206 -12.33226 -12.08043 -11.99586 -11.87901 -11.82943 -11.73325 -11.39049 -11.16499 -10.71006 -10.60788 -10.21349 -9.46082 -8.20687 -6.30885 -0.96350 0.00202 0.43758 1.16051 1.32987 1.36981 1.39982 1.45206 1.56544 2.17128 2.38962 2.96613 3.10262 3.18252 3.24344 3.41916 3.61097 3.68129 3.78888 4.00704 4.14226 4.20525 4.40221 4.46117 4.51166 4.57383 4.62984 4.74106 4.80179 4.84764 4.89484 4.95252 5.05024 5.13293 5.17255 5.21180 5.21247 5.28163 5.42901 5.46184 5.48584 5.65188 5.67083 5.84655 6.07124 6.09814 6.62107 6.63480 6.81551 7.21730 7.40522 8.86756 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011682 B = 0.003900 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.337314 B = 7177.906980 C = 8312.832792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.151 4.151 3 C 0.146 3.854 4 C -0.164 4.164 5 C -0.147 4.147 6 N -0.572 5.572 7 C 0.262 3.738 8 C -0.521 4.521 9 H 0.069 0.931 10 C 0.008 3.992 11 N -0.930 5.930 12 Si 0.950 3.050 13 H -0.262 1.262 14 H -0.275 1.275 15 H -0.293 1.293 16 C 0.489 3.511 17 O -0.587 6.587 18 C 0.071 3.929 19 N -0.426 5.426 20 C 0.092 3.908 21 C 0.009 3.991 22 N 0.071 4.929 23 O -0.187 6.187 24 O -0.151 6.151 25 N -0.488 5.488 26 C 0.260 3.740 27 C -0.078 4.078 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.028 0.972 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.054 0.946 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.036 0.964 40 H -0.012 1.012 41 H 0.262 0.738 42 H 0.169 0.831 43 H 0.176 0.824 44 H 0.231 0.769 45 H 0.085 0.915 46 H 0.118 0.882 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.193 -16.108 6.554 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.188 4.188 3 C 0.062 3.938 4 C -0.221 4.221 5 C -0.204 4.204 6 N -0.303 5.303 7 C 0.141 3.859 8 C -0.560 4.560 9 H 0.087 0.913 10 C -0.190 4.190 11 N -0.571 5.571 12 Si 0.776 3.224 13 H -0.186 1.186 14 H -0.200 1.200 15 H -0.220 1.220 16 C 0.275 3.725 17 O -0.468 6.468 18 C -0.051 4.051 19 N -0.107 5.107 20 C -0.053 4.053 21 C -0.199 4.199 22 N 0.587 4.413 23 O -0.396 6.396 24 O -0.367 6.367 25 N -0.209 5.209 26 C -0.006 4.006 27 C -0.135 4.135 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.115 0.885 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.006 0.994 41 H 0.071 0.929 42 H 0.187 0.813 43 H 0.192 0.808 44 H 0.247 0.753 45 H 0.104 0.896 46 H 0.137 0.863 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.766 -15.183 6.159 20.771 hybrid contribution -2.347 0.822 -0.093 2.489 sum 10.419 -14.361 6.066 18.751 Atomic orbital electron populations 1.21898 0.96516 1.01762 1.01411 1.22641 0.95957 0.94230 1.05955 1.20999 0.93515 0.92442 0.86833 1.22459 0.92560 1.03957 1.03150 1.22063 1.02577 1.00152 0.95594 1.48324 1.54357 1.20516 1.07105 1.18802 0.92207 0.79895 0.95029 1.21816 0.94193 0.93048 1.46945 0.91276 1.25711 1.02595 0.95032 0.95682 1.70046 1.37199 0.98476 1.51360 0.85622 0.80597 0.78604 0.77559 1.18571 1.20025 1.21985 1.20803 0.79832 0.88597 0.83273 1.90775 1.49182 1.62890 1.43923 1.23628 1.08889 0.96762 0.75865 1.45603 1.13369 1.41656 1.10047 1.22768 0.97531 0.97718 0.87234 1.20607 0.97601 1.16405 0.85305 1.42407 0.99840 0.97748 1.01270 1.94552 1.63362 1.62702 1.18975 1.94504 1.04951 1.44585 1.92638 1.69620 1.15300 1.16774 1.19192 1.24194 0.92853 0.99196 0.84313 1.20685 0.89471 0.99890 1.03489 0.90671 0.93253 0.95332 0.88510 0.86682 0.92690 0.87208 0.91621 0.92783 0.88697 0.93841 0.94581 0.99363 0.92922 0.81349 0.80769 0.75291 0.89645 0.86338 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.11 71.98 0.58 -2.75 16 2 C -0.15 -2.05 4.26 30.60 0.13 -1.91 16 3 C 0.15 2.99 0.71 3.60 0.00 2.99 16 4 C -0.16 -2.10 8.44 71.98 0.61 -1.49 16 5 C -0.15 -3.52 7.06 71.98 0.51 -3.01 16 6 N -0.57 -18.57 1.74 -779.09 -1.36 -19.93 16 7 C 0.26 12.15 4.52 85.63 0.39 12.53 16 8 C -0.52 -26.37 8.43 25.60 0.22 -26.15 16 9 H 0.07 3.36 5.79 -2.91 -0.02 3.34 16 10 C 0.01 0.45 5.46 84.66 0.46 0.91 16 11 N -0.93 -53.75 13.29 21.45 0.28 -53.47 16 12 Si 0.95 42.75 29.54 68.60 2.03 44.77 16 13 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 16 C 0.49 15.82 6.14 87.66 0.54 16.36 16 17 O -0.59 -26.86 16.10 -3.03 -0.05 -26.91 16 18 C 0.07 1.31 3.91 85.63 0.34 1.64 16 19 N -0.43 -9.91 2.28 -518.35 -1.18 -11.10 16 20 C 0.09 2.36 11.25 83.09 0.93 3.30 16 21 C 0.01 0.29 8.02 128.16 1.03 1.32 16 22 N 0.07 2.49 4.45 -50.70 -0.23 2.27 16 23 O -0.19 -7.09 19.24 18.88 0.36 -6.72 16 24 O -0.15 -4.98 19.02 18.88 0.36 -4.62 16 25 N -0.49 -15.75 11.23 -178.84 -2.01 -17.76 16 26 C 0.26 6.49 7.90 138.13 1.09 7.58 16 27 C -0.08 -1.20 10.19 71.24 0.73 -0.47 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.27 6.34 -2.39 -0.02 1.26 16 30 H 0.03 0.78 5.50 -2.39 -0.01 0.77 16 31 H 0.10 0.80 3.52 -2.39 -0.01 0.79 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.90 8.09 -2.38 -0.02 0.88 16 34 H 0.11 0.62 8.10 -2.39 -0.02 0.60 16 35 H 0.07 0.64 4.55 -2.39 -0.01 0.62 16 36 H 0.05 1.67 5.63 -2.38 -0.01 1.65 16 37 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.04 1.22 6.72 -2.39 -0.02 1.20 16 39 H 0.04 1.70 5.87 -2.39 -0.01 1.69 16 40 H -0.01 -0.67 7.47 -2.39 -0.02 -0.69 16 41 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 42 H 0.17 2.22 5.45 -2.39 -0.01 2.20 16 43 H 0.18 1.69 3.42 -2.39 -0.01 1.69 16 44 H 0.23 4.40 8.06 -2.91 -0.02 4.38 16 45 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.12 0.89 6.32 -2.38 -0.02 0.88 16 47 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -82.55 372.44 6.79 -75.75 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.03 Total: 6.86 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 7.55 Total: 10.85 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -4.49 Total: -99.98 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: 0.67 Total: -38.25 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -82.55 6.79 -75.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187510009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.676 kcal (2) G-P(sol) polarization free energy of solvation -82.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds