Wall clock time and date at job start Tue Mar 31 2020 21:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47042 * 2 1 4 4 C 1.53005 * 109.47104 * 173.98409 * 3 2 1 5 5 C 1.53002 * 109.47031 * 188.90307 * 4 3 2 6 6 C 1.53001 * 109.47537 * 293.98684 * 3 2 1 7 7 N 1.46499 * 109.46902 * 306.74877 * 6 3 2 8 8 C 1.46503 * 120.00050 * 82.57900 * 7 6 3 9 9 C 1.50704 * 109.46678 * 90.00358 * 8 7 6 10 10 H 1.08000 * 119.99696 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99933 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99765 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99776 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47077 * 60.00196 * 13 11 9 15 15 H 1.48506 * 109.46673 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47289 * 300.00052 * 13 11 9 17 17 C 1.34784 * 119.99951 * 262.30844 * 7 6 3 18 18 O 1.21277 * 119.99711 * 183.61761 * 17 7 6 19 19 C 1.50700 * 119.99499 * 3.61896 * 17 7 6 20 20 N 1.46504 * 109.46839 * 187.51524 * 19 17 7 21 21 C 1.34943 * 126.03602 * 124.71187 * 20 19 17 22 22 C 1.35313 * 107.74423 * 179.84120 * 21 20 19 23 23 C 1.39871 * 107.92356 * 0.42797 * 22 21 20 24 24 N 1.48019 * 125.90194 * 179.75988 * 23 22 21 25 25 O 1.21799 * 119.99942 * 180.02562 * 24 23 22 26 26 O 1.21803 * 119.99956 * 359.97438 * 24 23 22 27 27 N 1.30839 * 108.19583 * 359.73611 * 23 22 21 28 28 H 1.09002 * 109.47068 * 304.71560 * 1 2 3 29 29 H 1.09000 * 109.46745 * 64.71283 * 1 2 3 30 30 H 1.08997 * 109.46960 * 184.70889 * 1 2 3 31 31 H 1.09003 * 109.47332 * 239.99965 * 2 1 3 32 32 H 1.08994 * 109.47045 * 120.00249 * 2 1 3 33 33 H 1.09009 * 109.47305 * 53.98962 * 3 2 1 34 34 H 1.08996 * 109.46875 * 308.90139 * 4 3 2 35 35 H 1.08998 * 109.46971 * 68.90244 * 4 3 2 36 36 H 1.09001 * 109.47307 * 305.68780 * 5 4 3 37 37 H 1.08996 * 109.47140 * 65.68922 * 5 4 3 38 38 H 1.09003 * 109.46970 * 185.69044 * 5 4 3 39 39 H 1.08996 * 109.47042 * 186.75050 * 6 3 2 40 40 H 1.09003 * 109.46860 * 66.74637 * 6 3 2 41 41 H 1.09003 * 109.47047 * 209.99513 * 8 7 6 42 42 H 1.08994 * 109.47082 * 330.00262 * 8 7 6 43 43 H 0.97000 * 120.00018 * 180.02562 * 12 11 9 44 44 H 1.08993 * 109.47283 * 307.51304 * 19 17 7 45 45 H 1.09003 * 109.47450 * 67.52019 * 19 17 7 46 46 H 1.08001 * 126.12897 * 0.02562 * 21 20 19 47 47 H 1.08009 * 126.04214 * 180.16094 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5626 1.4452 0.1512 5 6 4.0504 2.8781 0.3738 6 6 1.6572 2.1189 -1.3179 7 7 2.1230 1.3005 -2.4401 8 6 1.3238 0.1608 -2.8970 9 6 0.3580 0.6184 -3.9595 10 1 0.3410 1.6545 -4.2637 11 6 -0.5038 -0.2858 -4.5433 12 7 -0.4833 -1.5474 -4.1726 13 14 -1.7014 0.2815 -5.8598 14 1 -0.9455 0.8479 -7.0056 15 1 -2.5114 -0.8738 -6.3231 16 1 -2.5997 1.3214 -5.2969 17 6 3.2842 1.5994 -3.0558 18 8 3.6375 0.9628 -4.0258 19 6 4.1432 2.7244 -2.5388 20 7 5.2461 2.9654 -3.4726 21 6 5.5477 4.1433 -4.0579 22 6 6.6323 3.9478 -4.8431 23 6 7.0004 2.6022 -4.7415 24 7 8.1338 1.9571 -5.4417 25 8 8.3578 0.7717 -5.2743 26 8 8.8418 2.6116 -6.1860 27 7 6.1701 2.0124 -3.9202 28 1 -0.3633 0.5853 0.8447 29 1 -0.3633 0.4390 -0.9292 30 1 -0.3633 -1.0242 0.0844 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5914 1.9865 0.8313 34 1 3.8439 0.8288 1.0050 35 1 4.0182 1.0426 -0.7535 36 1 3.6828 3.5161 -0.4299 37 1 3.6758 3.2452 1.3293 38 1 5.1403 2.8939 0.3806 39 1 2.1214 3.1037 -1.3691 40 1 0.5736 2.2247 -1.3706 41 1 1.9830 -0.6030 -3.3098 42 1 0.7688 -0.2542 -2.0558 43 1 -1.0893 -2.1836 -4.5835 44 1 3.5413 3.6284 -2.4466 45 1 4.5461 2.4549 -1.5625 46 1 5.0200 5.0757 -3.9216 47 1 7.1240 4.6973 -5.4456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264166019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:48 Heat of formation + Delta-G solvation = 64.672617 kcal Electronic energy + Delta-G solvation = -30959.018558 eV Core-core repulsion = 26762.631849 eV Total energy + Delta-G solvation = -4196.386708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.39796 -41.48631 -39.91360 -37.28764 -36.55157 -34.52435 -33.63639 -32.58467 -32.25694 -30.83418 -29.09448 -28.46515 -26.95118 -25.62319 -25.21758 -23.06658 -21.91775 -21.75163 -21.55115 -20.29608 -18.85744 -18.61595 -18.46892 -17.68108 -17.32735 -16.93541 -16.49538 -15.91153 -15.44508 -14.96350 -14.66935 -14.47119 -14.25043 -14.02896 -13.92261 -13.53533 -13.24517 -12.92006 -12.60093 -12.57254 -12.24414 -11.93862 -11.64125 -11.61282 -11.48846 -11.48177 -11.22174 -11.20910 -11.13617 -11.10015 -10.88173 -10.73209 -10.39532 -10.36890 -10.34306 -10.25091 -10.14809 -9.67422 -9.41701 -9.03414 -8.49566 -7.86433 -6.13684 -4.18388 0.12229 0.77717 1.42903 2.20437 2.28850 2.98289 3.23735 3.30015 3.31764 3.49590 4.04001 4.29289 4.34945 4.54192 4.69564 4.73096 4.81792 4.86613 4.89711 5.01089 5.04935 5.13809 5.21278 5.28244 5.47592 5.56068 5.60565 5.62760 5.70575 5.81307 5.91745 5.97272 6.06630 6.17408 6.24819 6.27017 6.32619 6.43125 6.64475 6.73349 6.75341 6.95174 7.27764 7.36517 7.70831 7.80734 8.10231 8.13115 8.66488 8.85742 9.46218 10.94053 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009707 B = 0.004021 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.685304 B = 6962.371402 C = 8794.496341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.128 4.128 3 C -0.103 4.103 4 C -0.134 4.134 5 C -0.167 4.167 6 C 0.105 3.895 7 N -0.583 5.583 8 C 0.229 3.771 9 C -0.530 4.530 10 H 0.054 0.946 11 C 0.065 3.935 12 N -0.891 5.891 13 Si 0.895 3.105 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.277 1.277 17 C 0.488 3.512 18 O -0.507 6.507 19 C 0.079 3.921 20 N -0.310 5.310 21 C 0.066 3.934 22 C -0.216 4.216 23 C 0.106 3.894 24 N 0.061 4.939 25 O -0.129 6.129 26 O -0.142 6.142 27 N -0.169 5.169 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.066 0.934 43 H 0.265 0.735 44 H 0.129 0.871 45 H 0.142 0.858 46 H 0.198 0.802 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.456 14.011 10.891 19.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.166 4.166 3 C -0.123 4.123 4 C -0.171 4.171 5 C -0.224 4.224 6 C -0.019 4.019 7 N -0.315 5.315 8 C 0.111 3.889 9 C -0.569 4.569 10 H 0.072 0.928 11 C -0.138 4.138 12 N -0.529 5.529 13 Si 0.723 3.277 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.203 1.203 17 C 0.271 3.729 18 O -0.382 6.382 19 C -0.045 4.045 20 N -0.098 5.098 21 C -0.079 4.079 22 C -0.246 4.246 23 C -0.138 4.138 24 N 0.586 4.414 25 O -0.349 6.349 26 O -0.356 6.356 27 N -0.001 5.001 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.159 0.841 46 H 0.215 0.785 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.617 12.689 11.263 18.211 hybrid contribution -0.426 0.889 -1.289 1.623 sum 6.191 13.578 9.973 17.949 Atomic orbital electron populations 1.21894 0.95395 1.01843 1.02177 1.21790 0.96537 0.95531 1.02713 1.21658 0.94978 0.97931 0.97698 1.21804 0.96192 0.96678 1.02435 1.22119 1.00934 0.97195 1.02177 1.21692 1.01627 0.92795 0.85754 1.48189 1.20183 1.31906 1.31233 1.19838 0.90102 0.82753 0.96165 1.21337 1.18602 0.95324 1.21648 0.92780 1.24883 0.97382 0.94749 0.96776 1.69898 1.38125 1.02183 1.42721 0.86609 0.80793 0.78150 0.82168 1.20328 1.21089 1.20255 1.19967 0.82605 0.85399 0.84908 1.90819 1.71130 1.51022 1.25194 1.23087 0.86069 1.02483 0.92823 1.48394 1.22095 1.05478 1.33877 1.22780 0.97446 0.91871 0.95774 1.21160 1.01258 0.94371 1.07837 1.22661 0.94427 0.93069 1.03653 1.42202 0.99508 1.00651 0.99012 1.94629 1.74888 0.97802 1.67592 1.94544 1.44046 1.64811 1.32241 1.77608 0.98994 1.12402 1.11134 0.93799 0.90525 0.92864 0.89752 0.92919 0.90392 0.91360 0.91659 0.92489 0.91907 0.92580 0.91800 0.89284 0.94249 0.91607 0.92563 0.85332 0.84121 0.78490 0.80868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.66 37.16 0.32 -1.93 16 2 C -0.13 -1.78 4.84 -26.73 -0.13 -1.90 16 3 C -0.10 -1.15 2.17 -90.62 -0.20 -1.35 16 4 C -0.13 -1.36 4.83 -26.73 -0.13 -1.49 16 5 C -0.17 -1.23 8.03 37.16 0.30 -0.93 16 6 C 0.11 1.35 4.87 -4.04 -0.02 1.34 16 7 N -0.58 -10.51 1.99 -175.06 -0.35 -10.85 16 8 C 0.23 5.38 3.65 -5.19 -0.02 5.36 16 9 C -0.53 -14.02 9.38 -34.44 -0.32 -14.34 16 10 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 13 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 C 0.49 9.05 6.63 -10.98 -0.07 8.97 16 18 O -0.51 -12.39 15.20 5.56 0.08 -12.31 16 19 C 0.08 0.97 4.46 -5.19 -0.02 0.94 16 20 N -0.31 -4.29 3.46 -62.55 -0.22 -4.51 16 21 C 0.07 0.67 11.45 -17.23 -0.20 0.47 16 22 C -0.22 -2.55 10.52 -40.01 -0.42 -2.97 16 23 C 0.11 1.71 8.15 -146.41 -1.19 0.51 16 24 N 0.06 1.03 4.45 33.02 0.15 1.18 16 25 O -0.13 -2.38 19.23 -29.46 -0.57 -2.94 16 26 O -0.14 -2.24 19.04 -29.46 -0.56 -2.80 16 27 N -0.17 -3.00 11.46 33.02 0.38 -2.62 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 1.30 5.54 -51.93 -0.29 1.01 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.46 5.13 -51.93 -0.27 1.19 16 32 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 33 H 0.08 0.72 8.12 -51.92 -0.42 0.30 16 34 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.06 0.83 5.19 -51.93 -0.27 0.56 16 36 H 0.06 0.35 4.38 -51.93 -0.23 0.13 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 39 H 0.06 0.60 4.52 -51.93 -0.23 0.36 16 40 H 0.09 1.23 7.03 -51.93 -0.36 0.86 16 41 H 0.04 1.10 7.48 -51.93 -0.39 0.72 16 42 H 0.07 1.48 3.21 -51.93 -0.17 1.32 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.13 1.03 6.37 -51.93 -0.33 0.70 16 45 H 0.14 1.49 3.10 -51.93 -0.16 1.33 16 46 H 0.20 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.17 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -34.90 373.07 -7.98 -42.88 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.04 Total: 0.36 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.20 Total: -5.63 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.70 Total: -41.34 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -1.04 Total: -18.05 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.90 -7.98 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264166019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.552 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds