Wall clock time and date at job start Tue Mar 31 2020 21:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47042 * 2 1 4 4 C 1.53005 * 109.47104 * 173.98409 * 3 2 1 5 5 C 1.53002 * 109.47031 * 188.90307 * 4 3 2 6 6 C 1.53001 * 109.47537 * 293.98684 * 3 2 1 7 7 N 1.46499 * 109.46902 * 306.74877 * 6 3 2 8 8 C 1.46503 * 120.00050 * 82.57900 * 7 6 3 9 9 C 1.50704 * 109.46678 * 90.00358 * 8 7 6 10 10 H 1.08000 * 119.99696 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99933 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99765 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99776 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47077 * 60.00196 * 13 11 9 15 15 H 1.48506 * 109.46673 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47289 * 300.00052 * 13 11 9 17 17 C 1.34784 * 119.99951 * 262.30844 * 7 6 3 18 18 O 1.21277 * 119.99711 * 183.61761 * 17 7 6 19 19 C 1.50700 * 119.99499 * 3.61896 * 17 7 6 20 20 N 1.46504 * 109.46839 * 187.51524 * 19 17 7 21 21 C 1.34943 * 126.03602 * 124.71187 * 20 19 17 22 22 C 1.35313 * 107.74423 * 179.84120 * 21 20 19 23 23 C 1.39871 * 107.92356 * 0.42797 * 22 21 20 24 24 N 1.48019 * 125.90194 * 179.75988 * 23 22 21 25 25 O 1.21799 * 119.99942 * 180.02562 * 24 23 22 26 26 O 1.21803 * 119.99956 * 359.97438 * 24 23 22 27 27 N 1.30839 * 108.19583 * 359.73611 * 23 22 21 28 28 H 1.09002 * 109.47068 * 304.71560 * 1 2 3 29 29 H 1.09000 * 109.46745 * 64.71283 * 1 2 3 30 30 H 1.08997 * 109.46960 * 184.70889 * 1 2 3 31 31 H 1.09003 * 109.47332 * 239.99965 * 2 1 3 32 32 H 1.08994 * 109.47045 * 120.00249 * 2 1 3 33 33 H 1.09009 * 109.47305 * 53.98962 * 3 2 1 34 34 H 1.08996 * 109.46875 * 308.90139 * 4 3 2 35 35 H 1.08998 * 109.46971 * 68.90244 * 4 3 2 36 36 H 1.09001 * 109.47307 * 305.68780 * 5 4 3 37 37 H 1.08996 * 109.47140 * 65.68922 * 5 4 3 38 38 H 1.09003 * 109.46970 * 185.69044 * 5 4 3 39 39 H 1.08996 * 109.47042 * 186.75050 * 6 3 2 40 40 H 1.09003 * 109.46860 * 66.74637 * 6 3 2 41 41 H 1.09003 * 109.47047 * 209.99513 * 8 7 6 42 42 H 1.08994 * 109.47082 * 330.00262 * 8 7 6 43 43 H 0.97000 * 120.00018 * 180.02562 * 12 11 9 44 44 H 1.08993 * 109.47283 * 307.51304 * 19 17 7 45 45 H 1.09003 * 109.47450 * 67.52019 * 19 17 7 46 46 H 1.08001 * 126.12897 * 0.02562 * 21 20 19 47 47 H 1.08009 * 126.04214 * 180.16094 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5626 1.4452 0.1512 5 6 4.0504 2.8781 0.3738 6 6 1.6572 2.1189 -1.3179 7 7 2.1230 1.3005 -2.4401 8 6 1.3238 0.1608 -2.8970 9 6 0.3580 0.6184 -3.9595 10 1 0.3410 1.6545 -4.2637 11 6 -0.5038 -0.2858 -4.5433 12 7 -0.4833 -1.5474 -4.1726 13 14 -1.7014 0.2815 -5.8598 14 1 -0.9455 0.8479 -7.0056 15 1 -2.5114 -0.8738 -6.3231 16 1 -2.5997 1.3214 -5.2969 17 6 3.2842 1.5994 -3.0558 18 8 3.6375 0.9628 -4.0258 19 6 4.1432 2.7244 -2.5388 20 7 5.2461 2.9654 -3.4726 21 6 5.5477 4.1433 -4.0579 22 6 6.6323 3.9478 -4.8431 23 6 7.0004 2.6022 -4.7415 24 7 8.1338 1.9571 -5.4417 25 8 8.3578 0.7717 -5.2743 26 8 8.8418 2.6116 -6.1860 27 7 6.1701 2.0124 -3.9202 28 1 -0.3633 0.5853 0.8447 29 1 -0.3633 0.4390 -0.9292 30 1 -0.3633 -1.0242 0.0844 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5914 1.9865 0.8313 34 1 3.8439 0.8288 1.0050 35 1 4.0182 1.0426 -0.7535 36 1 3.6828 3.5161 -0.4299 37 1 3.6758 3.2452 1.3293 38 1 5.1403 2.8939 0.3806 39 1 2.1214 3.1037 -1.3691 40 1 0.5736 2.2247 -1.3706 41 1 1.9830 -0.6030 -3.3098 42 1 0.7688 -0.2542 -2.0558 43 1 -1.0893 -2.1836 -4.5835 44 1 3.5413 3.6284 -2.4466 45 1 4.5461 2.4549 -1.5625 46 1 5.0200 5.0757 -3.9216 47 1 7.1240 4.6973 -5.4456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264166019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:47 Heat of formation + Delta-G solvation = 42.339731 kcal Electronic energy + Delta-G solvation = -30959.986984 eV Core-core repulsion = 26762.631849 eV Total energy + Delta-G solvation = -4197.355135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.56659 -42.62643 -41.21146 -38.57091 -37.84830 -35.89027 -34.93919 -34.37087 -33.30507 -31.79381 -30.42451 -29.79305 -28.28435 -27.02309 -26.21553 -24.77119 -22.86697 -22.82573 -22.68945 -21.45771 -20.02275 -19.86611 -19.63003 -18.95003 -18.84043 -18.39557 -17.75233 -17.27298 -16.81443 -16.42526 -15.82284 -15.63208 -15.56389 -14.98565 -14.95077 -14.74456 -14.37267 -14.25075 -13.80142 -13.76037 -13.53496 -13.13502 -13.01036 -12.96014 -12.84897 -12.68156 -12.62419 -12.47183 -12.43478 -12.33621 -12.27548 -12.19897 -11.88568 -11.65878 -11.50806 -11.47523 -11.33764 -11.20037 -10.67183 -10.58236 -10.17804 -9.43717 -8.22047 -6.34976 -1.13452 -0.34272 0.48694 1.19925 1.29224 1.32871 1.36975 1.43327 1.62397 2.15845 2.38489 3.06158 3.08866 3.37721 3.53481 3.79597 3.86135 3.92426 3.96047 3.97615 4.11565 4.25961 4.36858 4.46940 4.57863 4.59745 4.67771 4.69859 4.82153 4.87912 5.03086 5.06931 5.10061 5.12380 5.19858 5.21504 5.26222 5.31949 5.47062 5.48729 5.53236 5.55319 5.65904 5.71574 5.84283 6.08964 6.44872 6.63829 6.75183 7.23993 7.38929 8.84123 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009707 B = 0.004021 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.685304 B = 6962.371402 C = 8794.496341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.094 4.094 4 C -0.133 4.133 5 C -0.165 4.165 6 C 0.096 3.904 7 N -0.582 5.582 8 C 0.247 3.753 9 C -0.538 4.538 10 H 0.053 0.947 11 C 0.010 3.990 12 N -0.927 5.927 13 Si 0.958 3.042 14 H -0.285 1.285 15 H -0.283 1.283 16 H -0.254 1.254 17 C 0.478 3.522 18 O -0.582 6.582 19 C 0.090 3.910 20 N -0.314 5.314 21 C 0.094 3.906 22 C -0.216 4.216 23 C 0.084 3.916 24 N 0.058 4.942 25 O -0.209 6.209 26 O -0.093 6.093 27 N -0.241 5.241 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.114 0.886 40 H 0.082 0.918 41 H -0.025 1.025 42 H 0.074 0.926 43 H 0.264 0.736 44 H 0.189 0.811 45 H 0.161 0.839 46 H 0.265 0.735 47 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 19.708 12.751 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.113 4.113 4 C -0.171 4.171 5 C -0.221 4.221 6 C -0.026 4.026 7 N -0.313 5.313 8 C 0.127 3.873 9 C -0.577 4.577 10 H 0.072 0.928 11 C -0.189 4.189 12 N -0.566 5.566 13 Si 0.783 3.217 14 H -0.211 1.211 15 H -0.209 1.209 16 H -0.179 1.179 17 C 0.264 3.736 18 O -0.462 6.462 19 C -0.032 4.032 20 N -0.102 5.102 21 C -0.050 4.050 22 C -0.246 4.246 23 C -0.158 4.158 24 N 0.580 4.420 25 O -0.410 6.410 26 O -0.324 6.324 27 N -0.074 5.074 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.135 0.865 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.132 0.868 40 H 0.100 0.900 41 H -0.007 1.007 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.206 0.794 45 H 0.178 0.822 46 H 0.281 0.719 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.748 18.256 13.245 23.275 hybrid contribution -0.153 -0.756 -1.864 2.017 sum 5.595 17.500 11.381 21.612 Atomic orbital electron populations 1.21813 0.95773 1.01091 1.01983 1.21750 0.96139 0.97755 1.01054 1.21643 0.95891 0.95796 0.97955 1.21781 0.95113 0.99187 1.00973 1.22111 1.01310 0.94715 1.03978 1.22115 1.01775 0.94244 0.84422 1.48097 1.19874 1.30908 1.32378 1.19279 0.88804 0.83589 0.95665 1.21707 1.18686 0.95211 1.22093 0.92841 1.25748 0.99356 0.94832 0.98965 1.70037 1.39130 1.03329 1.44151 0.85621 0.78817 0.78178 0.79108 1.21092 1.20879 1.17852 1.21051 0.82628 0.86193 0.83748 1.90792 1.72756 1.53921 1.28698 1.23299 0.85224 1.01967 0.92700 1.48559 1.21500 1.06050 1.34105 1.23907 0.96128 0.92322 0.92664 1.21743 1.01847 0.92647 1.08402 1.22970 0.94014 0.94621 1.04218 1.42465 1.00010 1.00492 0.98988 1.94646 1.76956 0.99015 1.70371 1.94467 1.43331 1.64194 1.30402 1.77512 1.01121 1.15267 1.13529 0.90282 0.93452 0.94669 0.94508 0.91502 0.86491 0.91174 0.95000 0.90700 0.89824 0.92213 0.86774 0.89954 1.00705 0.90883 0.92690 0.79394 0.82195 0.71943 0.77616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 8.66 71.98 0.62 -3.67 16 2 C -0.13 -3.59 4.84 30.59 0.15 -3.44 16 3 C -0.09 -1.82 2.17 -10.79 -0.02 -1.85 16 4 C -0.13 -2.36 4.83 30.60 0.15 -2.21 16 5 C -0.16 -1.53 8.03 71.98 0.58 -0.95 16 6 C 0.10 2.20 4.87 86.38 0.42 2.62 16 7 N -0.58 -21.24 1.99 -826.14 -1.64 -22.88 16 8 C 0.25 12.41 3.65 85.63 0.31 12.72 16 9 C -0.54 -29.52 9.38 25.60 0.24 -29.28 16 10 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 11 C 0.01 0.57 5.46 84.66 0.46 1.03 16 12 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 13 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 14 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 16 H -0.25 -10.74 7.11 99.48 0.71 -10.03 16 17 C 0.48 17.87 6.63 87.66 0.58 18.45 16 18 O -0.58 -30.34 15.20 -3.02 -0.05 -30.38 16 19 C 0.09 1.92 4.46 85.63 0.38 2.30 16 20 N -0.31 -7.88 3.46 -351.80 -1.22 -9.10 16 21 C 0.09 1.42 11.45 83.54 0.96 2.38 16 22 C -0.22 -4.36 10.52 21.99 0.23 -4.13 16 23 C 0.08 2.72 8.15 130.33 1.06 3.78 16 24 N 0.06 2.06 4.45 -49.44 -0.22 1.84 16 25 O -0.21 -8.53 19.23 18.89 0.36 -8.16 16 26 O -0.09 -2.88 19.04 18.88 0.36 -2.53 16 27 N -0.24 -8.77 11.46 -49.46 -0.57 -9.34 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 1.64 5.54 -2.39 -0.01 1.62 16 30 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.04 1.37 5.13 -2.39 -0.01 1.36 16 32 H 0.07 1.63 8.11 -2.39 -0.02 1.61 16 33 H 0.12 1.50 8.12 -2.38 -0.02 1.48 16 34 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 35 H 0.03 0.79 5.19 -2.39 -0.01 0.77 16 36 H 0.07 0.40 4.38 -2.39 -0.01 0.39 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.06 0.57 8.06 -2.39 -0.02 0.55 16 39 H 0.11 1.44 4.52 -2.39 -0.01 1.43 16 40 H 0.08 2.06 7.03 -2.39 -0.02 2.04 16 41 H -0.03 -1.57 7.48 -2.39 -0.02 -1.59 16 42 H 0.07 3.55 3.21 -2.39 -0.01 3.54 16 43 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 44 H 0.19 1.67 6.37 -2.39 -0.02 1.65 16 45 H 0.16 2.86 3.10 -2.39 -0.01 2.85 16 46 H 0.26 0.19 8.06 -2.91 -0.02 0.16 16 47 H 0.21 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -91.04 373.07 6.49 -84.56 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.02 Total: 7.11 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 6.12 Total: -2.24 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -3.36 Total: -94.56 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: 0.68 Total: -41.07 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -91.04 6.49 -84.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264166019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.895 kcal (2) G-P(sol) polarization free energy of solvation -91.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds