Wall clock time and date at job start Tue Mar 31 2020 21:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34774 * 119.99666 * 2 1 4 4 O 1.21514 * 119.99577 * 180.02562 * 3 2 1 5 5 O 1.34631 * 120.00370 * 0.02562 * 3 2 1 6 6 C 1.45208 * 117.00200 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47022 * 60.00271 * 6 5 3 8 8 C 1.53002 * 109.47013 * 180.02562 * 6 5 3 9 9 C 1.52998 * 109.46735 * 299.99962 * 6 5 3 10 10 C 1.46498 * 120.00230 * 180.02562 * 2 1 3 11 11 H 1.09000 * 109.47352 * 124.30950 * 10 2 1 12 12 C 1.50700 * 109.47323 * 244.31071 * 10 2 1 13 13 O 1.21293 * 119.99956 * 0.02562 * 12 10 2 14 14 N 1.34778 * 120.00095 * 179.97438 * 12 10 2 15 15 C 1.37096 * 119.99983 * 180.02562 * 14 12 10 16 16 H 1.08002 * 119.99727 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99837 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00375 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00070 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46664 * 60.00289 * 19 17 15 21 21 H 1.48493 * 109.47274 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47197 * 300.00921 * 19 17 15 23 23 C 1.50697 * 109.47109 * 4.31502 * 10 2 1 24 24 C 1.39872 * 126.03898 * 304.58886 * 23 10 2 25 25 N 1.30840 * 108.20341 * 179.81991 * 24 23 10 26 26 N 1.40084 * 108.20586 * 0.43857 * 25 24 23 27 27 C 1.46498 * 126.03615 * 179.73940 * 26 25 24 28 28 C 1.34953 * 107.92188 * 359.72015 * 26 25 24 29 29 H 1.08999 * 109.47348 * 266.87021 * 1 2 3 30 30 H 1.09006 * 109.47021 * 146.87533 * 1 2 3 31 31 H 1.08997 * 109.47330 * 26.87333 * 1 2 3 32 32 H 1.08996 * 109.47681 * 59.99813 * 7 6 5 33 33 H 1.09001 * 109.47045 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.47084 * 299.99667 * 7 6 5 35 35 H 1.09005 * 109.47137 * 59.99791 * 8 6 5 36 36 H 1.08994 * 109.46926 * 180.02562 * 8 6 5 37 37 H 1.08995 * 109.47338 * 300.00061 * 8 6 5 38 38 H 1.08992 * 109.47493 * 60.00409 * 9 6 5 39 39 H 1.09008 * 109.46711 * 179.97438 * 9 6 5 40 40 H 1.09001 * 109.47116 * 299.99584 * 9 6 5 41 41 H 0.97004 * 119.99775 * 0.02562 * 14 12 10 42 42 H 0.97001 * 120.00251 * 179.97438 * 18 17 15 43 43 H 1.08009 * 125.89642 * 0.02562 * 24 23 10 44 44 H 1.09000 * 109.47189 * 269.97471 * 27 26 25 45 45 H 1.08997 * 109.47363 * 29.98247 * 27 26 25 46 46 H 1.09003 * 109.46950 * 149.97921 * 27 26 25 47 47 H 1.07997 * 126.12415 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3539 1.1672 -0.0005 5 8 1.4656 2.3332 0.0005 6 6 2.2564 3.5510 0.0011 7 6 3.1390 3.5865 -1.2482 8 6 1.3244 4.7643 0.0023 9 6 3.1390 3.5853 1.2503 10 6 2.1975 -1.2687 -0.0006 11 1 2.8808 -1.2933 -0.8494 12 6 2.9821 -1.3963 1.2797 13 8 2.9337 -0.5145 2.1111 14 7 3.7367 -2.4908 1.5014 15 6 4.4500 -2.6072 2.6664 16 1 4.4069 -1.8220 3.4066 17 6 5.2276 -3.7358 2.8951 18 7 5.2797 -4.6915 1.9945 19 14 6.2002 -3.8941 4.4821 20 1 5.2692 -3.8594 5.6386 21 1 6.9422 -5.1803 4.4817 22 1 7.1625 -2.7679 4.5874 23 6 1.2218 -2.4121 -0.1080 24 6 0.1407 -2.6544 0.7459 25 7 -0.4738 -3.7326 0.3315 26 7 0.2037 -4.2169 -0.7949 27 6 -0.1505 -5.4109 -1.5664 28 6 1.2400 -3.3891 -1.0440 29 1 -0.3634 -0.0561 1.0261 30 1 -0.3633 -0.8607 -0.5616 31 1 -0.3634 0.9166 -0.4645 32 1 2.5103 3.5620 -2.1381 33 1 3.7330 4.5004 -1.2475 34 1 3.8031 2.7221 -1.2485 35 1 0.6958 4.7388 0.8925 36 1 1.9180 5.6784 0.0022 37 1 0.6952 4.7401 -0.8875 38 1 3.8030 2.7210 1.2500 39 1 3.7330 4.4993 1.2505 40 1 2.5102 3.5600 2.1403 41 1 3.7751 -3.1962 0.8366 42 1 5.8228 -5.4792 2.1541 43 1 -0.1403 -2.0532 1.5980 44 1 0.3635 -6.2776 -1.1509 45 1 -1.2278 -5.5690 -1.5171 46 1 0.1495 -5.2743 -2.6054 47 1 1.9559 -3.4888 -1.8464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274977886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:59 Heat of formation + Delta-G solvation = -17.784742 kcal Electronic energy + Delta-G solvation = -31245.345026 eV Core-core repulsion = 27045.382698 eV Total energy + Delta-G solvation = -4199.962328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31242 -40.29500 -38.37014 -36.69919 -35.18363 -33.83564 -33.68672 -32.90143 -31.39705 -30.49756 -28.02187 -27.32254 -27.13968 -27.02673 -25.23150 -24.33064 -21.77046 -21.01411 -20.51754 -19.42522 -18.70606 -17.87806 -17.24416 -16.85893 -16.30529 -16.16113 -15.46399 -15.21435 -14.90049 -14.53550 -14.38724 -14.06909 -14.02096 -13.64784 -13.56469 -13.15106 -13.03308 -12.87388 -12.79802 -12.53023 -12.39307 -12.04120 -12.00387 -11.86337 -11.80906 -11.70590 -11.51842 -11.43368 -11.13710 -11.01353 -10.97776 -10.42057 -10.38358 -10.13356 -10.02446 -9.51897 -9.38945 -9.24454 -8.84881 -8.49982 -7.84995 -7.74897 -6.32794 -3.71760 1.95878 2.41587 2.63859 3.00090 3.26291 3.30390 3.35678 3.47514 3.99692 4.13903 4.31420 4.58001 4.89873 4.92290 4.93451 5.08626 5.10955 5.15227 5.15921 5.34205 5.37217 5.41727 5.45017 5.54136 5.61841 5.66729 5.75211 5.79002 5.81144 5.89085 5.95107 6.01501 6.07055 6.12247 6.21466 6.33708 6.46972 6.69254 6.73013 6.77578 6.88660 7.07811 7.63479 7.80624 7.85623 8.14319 8.70339 8.91376 9.27587 9.64546 10.16528 10.84981 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008386 B = 0.004825 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3338.239802 B = 5801.302555 C = 8481.079602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.575 5.575 3 C 0.661 3.339 4 O -0.550 6.550 5 O -0.367 6.367 6 C 0.137 3.863 7 C -0.182 4.182 8 C -0.138 4.138 9 C -0.182 4.182 10 C 0.236 3.764 11 H 0.093 0.907 12 C 0.446 3.554 13 O -0.575 6.575 14 N -0.555 5.555 15 C -0.291 4.291 16 H 0.101 0.899 17 C 0.022 3.978 18 N -0.903 5.903 19 Si 0.928 3.072 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.239 4.239 24 C 0.077 3.923 25 N -0.298 5.298 26 N -0.377 5.377 27 C 0.104 3.896 28 C 0.079 3.921 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.391 0.609 42 H 0.270 0.730 43 H 0.182 0.818 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.049 6.792 -11.412 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.315 5.315 3 C 0.416 3.584 4 O -0.437 6.437 5 O -0.282 6.282 6 C 0.100 3.900 7 C -0.239 4.239 8 C -0.195 4.195 9 C -0.239 4.239 10 C 0.129 3.871 11 H 0.111 0.889 12 C 0.230 3.770 13 O -0.458 6.458 14 N -0.191 5.191 15 C -0.421 4.421 16 H 0.119 0.881 17 C -0.179 4.179 18 N -0.545 5.545 19 Si 0.755 3.245 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.252 4.252 24 C -0.110 4.110 25 N -0.118 5.118 26 N -0.158 5.158 27 C -0.037 4.037 28 C -0.068 4.068 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.224 0.776 42 H 0.080 0.920 43 H 0.199 0.801 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -11.597 6.331 -10.737 17.025 hybrid contribution 1.338 -0.137 0.346 1.389 sum -10.259 6.194 -10.390 15.861 Atomic orbital electron populations 1.21817 0.79338 1.02638 1.01797 1.46140 1.06468 1.02404 1.76495 1.17652 0.83918 0.80638 0.76197 1.90900 1.12081 1.86366 1.54361 1.86240 1.40963 1.13763 1.87275 1.21946 0.90750 0.80860 0.96448 1.22507 1.00654 1.04410 0.96336 1.21829 0.99515 0.95164 1.02998 1.22490 1.00814 1.04323 0.96312 1.18815 0.90705 0.78631 0.98933 0.88944 1.19804 0.84293 0.84308 0.88612 1.90522 1.67492 1.40954 1.46867 1.41669 1.40734 1.17591 1.19133 1.19628 1.22069 1.04419 0.95999 0.88130 1.25200 0.98192 0.95416 0.99052 1.69605 1.41207 1.08826 1.34868 0.85962 0.79569 0.77330 0.81618 1.20021 1.21063 1.19938 1.19637 1.02934 1.01514 1.01081 1.23797 0.93938 0.94257 0.98969 1.77371 1.20925 1.13242 1.00281 1.48381 1.22059 1.21955 1.23423 1.21827 1.02915 0.84489 0.94506 1.22253 0.92796 0.91540 1.00189 0.92849 0.90852 0.90975 0.92582 0.91581 0.89178 0.91612 0.90537 0.91846 0.88671 0.91880 0.92270 0.77618 0.92047 0.80069 0.90624 0.89491 0.89586 0.80527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 8.84 59.84 0.53 1.75 16 2 N -0.58 -10.32 2.78 -182.42 -0.51 -10.83 16 3 C 0.66 12.90 6.76 54.05 0.37 13.26 16 4 O -0.55 -12.27 10.73 -24.91 -0.27 -12.53 16 5 O -0.37 -6.15 8.66 -40.30 -0.35 -6.50 16 6 C 0.14 1.95 1.13 -90.62 -0.10 1.85 16 7 C -0.18 -2.42 8.37 37.15 0.31 -2.11 16 8 C -0.14 -1.44 8.85 37.16 0.33 -1.11 16 9 C -0.18 -2.84 8.37 37.16 0.31 -2.53 16 10 C 0.24 4.49 2.85 -70.24 -0.20 4.29 16 11 H 0.09 1.69 8.11 -51.93 -0.42 1.27 16 12 C 0.45 10.99 6.48 -10.98 -0.07 10.92 16 13 O -0.57 -16.19 14.58 -10.11 -0.15 -16.34 16 14 N -0.56 -14.55 5.19 -10.96 -0.06 -14.61 16 15 C -0.29 -8.38 9.68 -14.93 -0.14 -8.52 16 16 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 17 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 18 N -0.90 -25.00 13.05 55.50 0.72 -24.27 16 19 Si 0.93 21.75 29.55 -169.99 -5.02 16.73 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.24 -3.90 3.56 -105.05 -0.37 -4.28 16 24 C 0.08 1.28 9.36 -17.36 -0.16 1.11 16 25 N -0.30 -4.77 12.58 30.63 0.39 -4.38 16 26 N -0.38 -5.04 4.01 -68.16 -0.27 -5.31 16 27 C 0.10 0.89 11.47 59.85 0.69 1.57 16 28 C 0.08 1.08 11.38 -17.22 -0.20 0.89 16 29 H 0.05 0.75 7.32 -51.93 -0.38 0.37 16 30 H 0.07 0.95 5.74 -51.93 -0.30 0.65 16 31 H 0.07 0.90 7.28 -51.93 -0.38 0.53 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.47 5.88 -51.93 -0.31 1.17 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.88 5.88 -51.93 -0.31 1.58 16 39 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.39 9.86 7.78 -40.82 -0.32 9.54 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.18 2.93 7.14 -52.48 -0.37 2.55 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.18 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -36.18 385.14 -5.47 -41.65 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -6.94 Total: 12.97 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: 1.19 Total: 17.63 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.27 Total: -59.40 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.76 Total: -35.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.18 -5.47 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274977886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.867 kcal (2) G-P(sol) polarization free energy of solvation -36.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds