Wall clock time and date at job start Tue Mar 31 2020 21:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34774 * 119.99666 * 2 1 4 4 O 1.21514 * 119.99577 * 180.02562 * 3 2 1 5 5 O 1.34631 * 120.00370 * 0.02562 * 3 2 1 6 6 C 1.45208 * 117.00200 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47022 * 60.00271 * 6 5 3 8 8 C 1.53002 * 109.47013 * 180.02562 * 6 5 3 9 9 C 1.52998 * 109.46735 * 299.99962 * 6 5 3 10 10 C 1.46498 * 120.00230 * 180.02562 * 2 1 3 11 11 H 1.09000 * 109.47352 * 124.30950 * 10 2 1 12 12 C 1.50700 * 109.47323 * 244.31071 * 10 2 1 13 13 O 1.21293 * 119.99956 * 0.02562 * 12 10 2 14 14 N 1.34778 * 120.00095 * 179.97438 * 12 10 2 15 15 C 1.37096 * 119.99983 * 180.02562 * 14 12 10 16 16 H 1.08002 * 119.99727 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99837 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00375 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00070 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46664 * 60.00289 * 19 17 15 21 21 H 1.48493 * 109.47274 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47197 * 300.00921 * 19 17 15 23 23 C 1.50697 * 109.47109 * 4.31502 * 10 2 1 24 24 C 1.39872 * 126.03898 * 304.58886 * 23 10 2 25 25 N 1.30840 * 108.20341 * 179.81991 * 24 23 10 26 26 N 1.40084 * 108.20586 * 0.43857 * 25 24 23 27 27 C 1.46498 * 126.03615 * 179.73940 * 26 25 24 28 28 C 1.34953 * 107.92188 * 359.72015 * 26 25 24 29 29 H 1.08999 * 109.47348 * 266.87021 * 1 2 3 30 30 H 1.09006 * 109.47021 * 146.87533 * 1 2 3 31 31 H 1.08997 * 109.47330 * 26.87333 * 1 2 3 32 32 H 1.08996 * 109.47681 * 59.99813 * 7 6 5 33 33 H 1.09001 * 109.47045 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.47084 * 299.99667 * 7 6 5 35 35 H 1.09005 * 109.47137 * 59.99791 * 8 6 5 36 36 H 1.08994 * 109.46926 * 180.02562 * 8 6 5 37 37 H 1.08995 * 109.47338 * 300.00061 * 8 6 5 38 38 H 1.08992 * 109.47493 * 60.00409 * 9 6 5 39 39 H 1.09008 * 109.46711 * 179.97438 * 9 6 5 40 40 H 1.09001 * 109.47116 * 299.99584 * 9 6 5 41 41 H 0.97004 * 119.99775 * 0.02562 * 14 12 10 42 42 H 0.97001 * 120.00251 * 179.97438 * 18 17 15 43 43 H 1.08009 * 125.89642 * 0.02562 * 24 23 10 44 44 H 1.09000 * 109.47189 * 269.97471 * 27 26 25 45 45 H 1.08997 * 109.47363 * 29.98247 * 27 26 25 46 46 H 1.09003 * 109.46950 * 149.97921 * 27 26 25 47 47 H 1.07997 * 126.12415 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3539 1.1672 -0.0005 5 8 1.4656 2.3332 0.0005 6 6 2.2564 3.5510 0.0011 7 6 3.1390 3.5865 -1.2482 8 6 1.3244 4.7643 0.0023 9 6 3.1390 3.5853 1.2503 10 6 2.1975 -1.2687 -0.0006 11 1 2.8808 -1.2933 -0.8494 12 6 2.9821 -1.3963 1.2797 13 8 2.9337 -0.5145 2.1111 14 7 3.7367 -2.4908 1.5014 15 6 4.4500 -2.6072 2.6664 16 1 4.4069 -1.8220 3.4066 17 6 5.2276 -3.7358 2.8951 18 7 5.2797 -4.6915 1.9945 19 14 6.2002 -3.8941 4.4821 20 1 5.2692 -3.8594 5.6386 21 1 6.9422 -5.1803 4.4817 22 1 7.1625 -2.7679 4.5874 23 6 1.2218 -2.4121 -0.1080 24 6 0.1407 -2.6544 0.7459 25 7 -0.4738 -3.7326 0.3315 26 7 0.2037 -4.2169 -0.7949 27 6 -0.1505 -5.4109 -1.5664 28 6 1.2400 -3.3891 -1.0440 29 1 -0.3634 -0.0561 1.0261 30 1 -0.3633 -0.8607 -0.5616 31 1 -0.3634 0.9166 -0.4645 32 1 2.5103 3.5620 -2.1381 33 1 3.7330 4.5004 -1.2475 34 1 3.8031 2.7221 -1.2485 35 1 0.6958 4.7388 0.8925 36 1 1.9180 5.6784 0.0022 37 1 0.6952 4.7401 -0.8875 38 1 3.8030 2.7210 1.2500 39 1 3.7330 4.4993 1.2505 40 1 2.5102 3.5600 2.1403 41 1 3.7751 -3.1962 0.8366 42 1 5.8228 -5.4792 2.1541 43 1 -0.1403 -2.0532 1.5980 44 1 0.3635 -6.2776 -1.1509 45 1 -1.2278 -5.5690 -1.5171 46 1 0.1495 -5.2743 -2.6054 47 1 1.9559 -3.4888 -1.8464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274977886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:58 Heat of formation + Delta-G solvation = -43.441854 kcal Electronic energy + Delta-G solvation = -31246.457602 eV Core-core repulsion = 27045.382698 eV Total energy + Delta-G solvation = -4201.074904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.54173 -41.64878 -40.09945 -38.22792 -36.66649 -35.86560 -34.94910 -33.97277 -33.31082 -31.96312 -29.31673 -28.31731 -28.26610 -28.13119 -26.95336 -25.85040 -23.13307 -22.26678 -21.85275 -20.82017 -20.29058 -19.83885 -18.71103 -18.19716 -17.81783 -17.41352 -16.89640 -16.68561 -16.27204 -16.09468 -15.77952 -15.57118 -15.34162 -15.23429 -14.94133 -14.43827 -14.29673 -14.18164 -13.98530 -13.65117 -13.48247 -13.34256 -13.30107 -13.11645 -13.02614 -12.96207 -12.89436 -12.77808 -12.70303 -12.42667 -12.39469 -12.18493 -12.13581 -11.65252 -11.47481 -11.28565 -10.95321 -10.68224 -10.34889 -9.97934 -9.78690 -9.27548 -8.44097 -5.91268 0.82625 1.11817 1.37540 1.38681 1.49437 1.64154 1.72341 2.00036 2.12444 2.30607 2.88527 3.20432 3.40469 3.56417 3.83246 3.86213 3.88526 4.01003 4.09050 4.24980 4.29562 4.35042 4.42644 4.51702 4.58445 4.64866 4.67503 4.76346 4.77528 4.80044 4.81192 4.86624 4.90776 4.93608 4.95282 5.15740 5.35047 5.36732 5.41868 5.48853 5.49466 5.55392 6.00979 6.09231 6.44264 6.62272 6.64461 7.14806 7.45085 7.59389 8.15453 8.72826 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008386 B = 0.004825 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3338.239802 B = 5801.302555 C = 8481.079602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.577 5.577 3 C 0.654 3.346 4 O -0.586 6.586 5 O -0.364 6.364 6 C 0.124 3.876 7 C -0.176 4.176 8 C -0.129 4.129 9 C -0.178 4.178 10 C 0.252 3.748 11 H 0.100 0.900 12 C 0.443 3.557 13 O -0.618 6.618 14 N -0.562 5.562 15 C -0.328 4.328 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.917 5.917 19 Si 0.988 3.012 20 H -0.274 1.274 21 H -0.267 1.267 22 H -0.275 1.275 23 C -0.264 4.264 24 C 0.066 3.934 25 N -0.317 5.317 26 N -0.369 5.369 27 C 0.092 3.908 28 C 0.098 3.902 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.395 0.605 42 H 0.277 0.723 43 H 0.173 0.827 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.123 0.877 47 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.891 6.606 -13.236 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.316 5.316 3 C 0.409 3.591 4 O -0.475 6.475 5 O -0.279 6.279 6 C 0.087 3.913 7 C -0.233 4.233 8 C -0.186 4.186 9 C -0.236 4.236 10 C 0.144 3.856 11 H 0.118 0.882 12 C 0.229 3.771 13 O -0.504 6.504 14 N -0.198 5.198 15 C -0.458 4.458 16 H 0.090 0.910 17 C -0.209 4.209 18 N -0.558 5.558 19 Si 0.811 3.189 20 H -0.199 1.199 21 H -0.191 1.191 22 H -0.200 1.200 23 C -0.276 4.276 24 C -0.120 4.120 25 N -0.139 5.139 26 N -0.150 5.150 27 C -0.047 4.047 28 C -0.051 4.051 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.228 0.772 42 H 0.086 0.914 43 H 0.190 0.810 44 H 0.098 0.902 45 H 0.116 0.884 46 H 0.141 0.859 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -12.494 6.119 -12.588 18.761 hybrid contribution 1.579 -0.089 0.870 1.805 sum -10.914 6.030 -11.718 17.111 Atomic orbital electron populations 1.21954 0.77062 1.04211 1.01984 1.46328 1.07874 1.01709 1.75730 1.17954 0.83714 0.81616 0.75828 1.90887 1.13767 1.87050 1.55832 1.86255 1.41101 1.13693 1.86864 1.22404 0.91758 0.81129 0.95976 1.22435 1.00372 1.04031 0.96444 1.21844 0.99219 0.93828 1.03730 1.22430 1.00496 1.03580 0.97047 1.18502 0.91233 0.80396 0.95452 0.88188 1.20854 0.83390 0.82853 0.89985 1.90483 1.68651 1.42191 1.49073 1.41671 1.41153 1.18331 1.18683 1.19541 1.24445 1.04789 0.97025 0.90989 1.25929 0.98351 0.94578 1.02055 1.69655 1.41243 1.08962 1.35934 0.85080 0.78139 0.77845 0.77797 1.19906 1.19085 1.20046 1.19428 1.03145 1.01994 1.03072 1.23715 0.94440 0.94732 0.99124 1.77317 1.21745 1.13149 1.01661 1.48789 1.21261 1.22479 1.22457 1.22281 1.03896 0.82688 0.95824 1.22750 0.92595 0.89892 0.99830 0.93360 0.89389 0.89165 0.91068 0.89032 0.92752 0.91643 0.87852 0.90368 0.93451 0.88890 0.93162 0.77185 0.91395 0.81018 0.90238 0.88423 0.85885 0.76836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.50 8.84 127.77 1.13 3.63 16 2 N -0.58 -21.14 2.78 -961.47 -2.67 -23.81 16 3 C 0.65 26.34 6.76 129.79 0.88 27.22 16 4 O -0.59 -27.58 10.73 25.18 0.27 -27.31 16 5 O -0.36 -12.26 8.66 -55.40 -0.48 -12.74 16 6 C 0.12 3.44 1.13 -10.80 -0.01 3.43 16 7 C -0.18 -4.53 8.37 71.98 0.60 -3.93 16 8 C -0.13 -2.36 8.85 71.98 0.64 -1.72 16 9 C -0.18 -5.70 8.37 71.98 0.60 -5.10 16 10 C 0.25 9.77 2.85 43.50 0.12 9.89 16 11 H 0.10 3.70 8.11 -2.39 -0.02 3.68 16 12 C 0.44 22.85 6.48 87.66 0.57 23.42 16 13 O -0.62 -36.96 14.58 11.90 0.17 -36.78 16 14 N -0.56 -30.58 5.19 -306.98 -1.59 -32.17 16 15 C -0.33 -19.63 9.68 84.04 0.81 -18.82 16 16 H 0.07 4.64 7.16 -2.91 -0.02 4.61 16 17 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 18 N -0.92 -50.58 13.05 21.66 0.28 -50.30 16 19 Si 0.99 44.89 29.55 68.60 2.03 46.92 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 23 C -0.26 -8.50 3.56 -20.14 -0.07 -8.57 16 24 C 0.07 2.19 9.36 85.24 0.80 2.99 16 25 N -0.32 -9.88 12.58 -57.01 -0.72 -10.60 16 26 N -0.37 -9.00 4.01 -369.57 -1.48 -10.48 16 27 C 0.09 1.27 11.47 127.77 1.47 2.73 16 28 C 0.10 2.46 11.38 83.54 0.95 3.41 16 29 H 0.05 1.39 7.32 -2.39 -0.02 1.37 16 30 H 0.09 2.20 5.74 -2.38 -0.01 2.19 16 31 H 0.09 2.16 7.28 -2.39 -0.02 2.15 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.05 1.82 5.88 -2.38 -0.01 1.81 16 35 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.99 5.88 -2.39 -0.01 1.98 16 39 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.39 20.37 7.78 -92.71 -0.72 19.65 16 42 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.17 5.83 7.14 -2.91 -0.02 5.81 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.22 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -83.34 385.14 5.04 -78.31 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: 0.27 Total: 40.43 kcal Atomic # 6 Polarization: 29.58 SS G_CDS: 8.95 Total: 38.54 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -6.18 Total: -127.36 kcal Atomic # 8 Polarization: -76.79 SS G_CDS: -0.04 Total: -76.83 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -83.34 5.04 -78.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274977886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.864 kcal (2) G-P(sol) polarization free energy of solvation -83.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds