Wall clock time and date at job start Tue Mar 31 2020 21:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47087 * 2 1 4 4 C 1.52995 * 109.47043 * 240.00211 * 2 1 3 5 5 O 1.45199 * 109.47405 * 120.00085 * 2 1 3 6 6 C 1.34638 * 116.99728 * 59.99591 * 5 2 1 7 7 O 1.21506 * 120.00405 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99432 * 180.02562 * 6 5 2 9 9 C 1.46501 * 119.99748 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.47280 * 180.02562 * 9 8 6 11 11 N 1.31130 * 126.54716 * 90.00276 * 10 9 8 12 12 C 1.34500 * 105.61179 * 179.73913 * 11 10 9 13 13 C 1.50701 * 126.28458 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47223 * 90.00288 * 13 12 11 15 15 C 1.36932 * 120.00377 * 89.99198 * 14 13 12 16 16 H 1.07995 * 120.00255 * 218.05674 * 15 14 13 17 17 C 1.38811 * 119.99669 * 38.05800 * 15 14 13 18 18 N 1.31628 * 120.00448 * 20.57455 * 17 15 14 19 19 Si 1.86804 * 120.00367 * 200.57039 * 17 15 14 20 20 H 1.48501 * 109.46595 * 59.99747 * 19 17 15 21 21 H 1.48493 * 109.47437 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46696 * 300.00463 * 19 17 15 23 23 C 1.46506 * 119.99690 * 269.99833 * 14 13 12 24 24 C 1.52998 * 117.49772 * 193.92020 * 23 14 13 25 25 C 1.52994 * 117.49927 * 125.29702 * 23 14 13 26 26 N 1.29944 * 107.42129 * 359.97438 * 12 11 10 27 27 O 1.21296 * 110.25405 * 0.02562 * 26 12 11 28 28 H 1.09001 * 109.47465 * 299.99991 * 1 2 3 29 29 H 1.08996 * 109.47298 * 59.99946 * 1 2 3 30 30 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47357 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47021 * 299.99824 * 3 2 1 33 33 H 1.09002 * 109.47482 * 60.00261 * 3 2 1 34 34 H 1.09008 * 109.47369 * 299.99937 * 4 2 1 35 35 H 1.09004 * 109.47528 * 59.99892 * 4 2 1 36 36 H 1.09004 * 109.47644 * 180.02562 * 4 2 1 37 37 H 0.97003 * 120.00344 * 0.02562 * 8 6 5 38 38 H 1.09003 * 109.47363 * 60.00386 * 9 8 6 39 39 H 1.08999 * 109.47350 * 300.00280 * 9 8 6 40 40 H 1.09003 * 109.46700 * 209.99922 * 13 12 11 41 41 H 1.08994 * 109.46979 * 329.99147 * 13 12 11 42 42 H 0.96992 * 120.00048 * 174.96400 * 18 17 15 43 43 H 1.09000 * 115.54983 * 339.62690 * 23 14 13 44 44 H 1.09002 * 117.50114 * 0.02562 * 24 23 14 45 45 H 1.08998 * 117.49379 * 145.01674 * 24 23 14 46 46 H 1.09001 * 117.50163 * 214.97781 * 25 23 14 47 47 H 1.09001 * 117.49847 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0672 -2.6653 2.4171 9 6 1.6740 -4.0668 2.5831 10 6 2.2641 -4.6062 3.8607 11 7 1.7090 -4.5819 5.0484 12 6 2.5910 -5.1753 5.8724 13 6 2.4195 -5.3952 7.3534 14 7 1.7743 -6.6902 7.5833 15 6 2.5365 -7.8174 7.7363 16 1 2.2055 -8.7545 7.3137 17 6 3.7345 -7.7556 8.4347 18 7 3.9546 -6.7694 9.2782 19 14 5.0346 -9.0721 8.1776 20 1 5.4505 -9.0852 6.7521 21 1 6.2115 -8.7796 9.0345 22 1 4.4748 -10.3984 8.5421 23 6 0.3134 -6.7791 7.6495 24 6 -0.2912 -8.0688 8.2080 25 6 -0.3773 -7.7696 6.7100 26 7 3.6180 -5.5242 5.1568 27 8 3.4502 -5.2061 3.9984 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7216 -1.2491 37 1 2.6263 -2.2363 3.0836 38 1 2.0413 -4.6498 1.7384 39 1 0.5872 -4.1365 2.6275 40 1 3.3960 -5.3848 7.8376 41 1 1.7994 -4.6012 7.7691 42 1 4.7591 -6.7650 9.8199 43 1 -0.2051 -5.8450 7.8655 44 1 0.3979 -8.8510 8.5266 45 1 -1.2077 -7.9833 8.7918 46 1 -1.3504 -7.4874 6.3083 47 1 0.2552 -8.3548 6.0424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283232725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:31 Heat of formation + Delta-G solvation = 40.346417 kcal Electronic energy + Delta-G solvation = -29449.372889 eV Core-core repulsion = 25251.931317 eV Total energy + Delta-G solvation = -4197.441572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.06355 -41.00224 -37.84324 -37.22823 -35.66896 -35.15337 -34.29194 -33.51331 -32.00098 -30.56646 -27.72468 -27.67632 -27.66032 -26.74761 -24.21798 -23.06132 -22.44772 -21.41012 -21.11631 -20.37752 -19.88440 -18.60767 -17.71734 -17.20550 -16.77423 -16.49276 -16.26961 -15.69940 -15.43965 -15.05505 -14.80416 -14.49439 -14.09768 -13.98176 -13.84821 -13.69472 -13.23409 -12.85148 -12.79694 -12.47495 -12.20972 -12.19854 -12.05361 -11.87171 -11.68684 -11.62780 -11.34580 -11.10120 -10.90420 -10.86956 -10.66442 -10.64774 -10.63609 -10.44903 -10.34461 -10.13403 -9.77102 -9.59929 -9.55035 -9.23320 -8.57268 -6.71023 -6.02080 -3.57926 1.26684 2.08121 2.58488 2.84316 3.06951 3.30242 3.35639 3.40558 3.89624 4.05239 4.33754 4.40594 4.45716 4.59650 4.77317 4.91519 4.99415 5.16274 5.17913 5.22941 5.23886 5.26854 5.35043 5.38768 5.48291 5.55234 5.56212 5.67539 5.78695 5.85938 6.00105 6.04630 6.09019 6.14643 6.24135 6.29001 6.44111 6.46499 6.57730 6.60835 6.91863 7.08688 7.12538 7.20890 7.68613 8.08940 8.31603 8.78424 8.94720 9.57397 10.12678 11.01828 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.002353 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.107885 B =11894.742838 C =12578.570264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.362 6.362 6 C 0.658 3.342 7 O -0.565 6.565 8 N -0.707 5.707 9 C 0.247 3.753 10 C 0.114 3.886 11 N -0.450 5.450 12 C 0.175 3.825 13 C 0.224 3.776 14 N -0.534 5.534 15 C -0.269 4.269 16 H 0.063 0.937 17 C 0.025 3.975 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.279 1.279 23 C 0.128 3.872 24 C -0.191 4.191 25 C -0.224 4.224 26 N -0.364 5.364 27 O 0.076 5.924 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.412 0.588 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.063 0.937 42 H 0.262 0.738 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 14.202 -16.630 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.277 6.277 6 C 0.412 3.588 7 O -0.454 6.454 8 N -0.369 5.369 9 C 0.123 3.877 10 C -0.108 4.108 11 N -0.186 5.186 12 C -0.100 4.100 13 C 0.094 3.906 14 N -0.250 5.250 15 C -0.398 4.398 16 H 0.081 0.919 17 C -0.177 4.177 18 N -0.526 5.526 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.205 1.205 23 C 0.019 3.981 24 C -0.230 4.230 25 C -0.264 4.264 26 N -0.070 5.070 27 O 0.017 5.983 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.247 0.753 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.118 0.882 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.400 13.744 -16.334 21.796 hybrid contribution 0.839 -0.636 -0.076 1.055 sum -3.561 13.109 -16.410 21.303 Atomic orbital electron populations 1.22527 0.93849 1.05211 1.02575 1.22103 0.94477 0.91505 0.81957 1.21870 1.02327 0.92478 1.03184 1.22529 1.01649 1.03568 0.96401 1.86317 1.71457 1.23296 1.46610 1.17832 0.78674 0.80609 0.81725 1.90921 1.40946 1.70434 1.43130 1.44548 1.56137 1.11859 1.24326 1.19284 1.00273 0.79227 0.88933 1.28227 0.86289 0.99191 0.97072 1.71932 1.28983 1.18421 0.99252 1.28158 0.84623 0.93843 1.03371 1.19628 1.02963 0.87690 0.80309 1.43251 0.98736 1.04570 1.78463 1.18866 1.01599 0.89155 1.30200 0.91917 1.25227 0.99846 0.97589 0.95005 1.69821 1.27492 1.32881 1.22373 0.86359 0.81028 0.81194 0.78247 1.20410 1.21266 1.20499 1.21151 0.84804 0.92040 1.00125 1.23078 1.01746 1.02884 0.95242 1.23305 1.01457 1.08385 0.93268 1.74744 1.23854 1.19188 0.89216 1.85325 1.33948 1.54675 1.24338 0.92053 0.91108 0.89252 0.91414 0.90096 0.91380 0.89257 0.91106 0.92090 0.75297 0.87680 0.86817 0.85850 0.91838 0.92805 0.88952 0.88200 0.90539 0.90742 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.37 37.16 0.31 -1.23 16 2 C 0.14 1.17 1.13 -90.62 -0.10 1.07 16 3 C -0.14 -0.87 8.85 37.16 0.33 -0.54 16 4 C -0.18 -1.51 8.37 37.16 0.31 -1.20 16 5 O -0.36 -3.85 9.94 -40.32 -0.40 -4.26 16 6 C 0.66 7.60 8.06 54.05 0.44 8.04 16 7 O -0.57 -7.38 11.88 -19.28 -0.23 -7.60 16 8 N -0.71 -7.52 5.55 -66.46 -0.37 -7.89 16 9 C 0.25 2.74 6.30 -5.19 -0.03 2.71 16 10 C 0.11 1.74 7.88 -13.06 -0.10 1.64 16 11 N -0.45 -8.25 11.55 -9.87 -0.11 -8.37 16 12 C 0.18 3.73 7.80 -156.37 -1.22 2.51 16 13 C 0.22 5.16 5.96 -5.19 -0.03 5.13 16 14 N -0.53 -13.00 2.76 -167.03 -0.46 -13.46 16 15 C -0.27 -7.13 8.04 -15.06 -0.12 -7.25 16 16 H 0.06 1.70 7.23 -52.49 -0.38 1.32 16 17 C 0.02 0.67 4.97 -17.43 -0.09 0.58 16 18 N -0.88 -24.34 11.45 55.49 0.64 -23.70 16 19 Si 0.90 21.53 29.60 -169.99 -5.03 16.50 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.13 2.72 6.61 -67.93 -0.45 2.27 16 24 C -0.19 -3.79 9.81 -26.73 -0.26 -4.06 16 25 C -0.22 -4.37 10.09 -26.74 -0.27 -4.64 16 26 N -0.36 -7.82 12.16 30.89 0.38 -7.45 16 27 O 0.08 1.35 11.31 18.13 0.20 1.56 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.92 5.88 -51.92 -0.31 0.62 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.41 4.07 8.57 -40.82 -0.35 3.72 16 38 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.12 3.19 5.52 -51.93 -0.29 2.90 16 41 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 42 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 43 H 0.09 1.83 8.10 -51.93 -0.42 1.41 16 44 H 0.10 2.19 6.95 -51.93 -0.36 1.83 16 45 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.08 1.73 8.01 -51.93 -0.42 1.32 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -30.28 391.82 -7.80 -38.09 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.03 Total: 5.66 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -1.29 Total: 5.02 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.07 Total: -60.87 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.42 Total: -10.30 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.28 -7.80 -38.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283232725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.434 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds