Wall clock time and date at job start Tue Mar 31 2020 21:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47087 * 2 1 4 4 C 1.52995 * 109.47043 * 240.00211 * 2 1 3 5 5 O 1.45199 * 109.47405 * 120.00085 * 2 1 3 6 6 C 1.34638 * 116.99728 * 59.99591 * 5 2 1 7 7 O 1.21506 * 120.00405 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99432 * 180.02562 * 6 5 2 9 9 C 1.46501 * 119.99748 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.47280 * 180.02562 * 9 8 6 11 11 N 1.31130 * 126.54716 * 90.00276 * 10 9 8 12 12 C 1.34500 * 105.61179 * 179.73913 * 11 10 9 13 13 C 1.50701 * 126.28458 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47223 * 90.00288 * 13 12 11 15 15 C 1.36932 * 120.00377 * 89.99198 * 14 13 12 16 16 H 1.07995 * 120.00255 * 218.05674 * 15 14 13 17 17 C 1.38811 * 119.99669 * 38.05800 * 15 14 13 18 18 N 1.31628 * 120.00448 * 20.57455 * 17 15 14 19 19 Si 1.86804 * 120.00367 * 200.57039 * 17 15 14 20 20 H 1.48501 * 109.46595 * 59.99747 * 19 17 15 21 21 H 1.48493 * 109.47437 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46696 * 300.00463 * 19 17 15 23 23 C 1.46506 * 119.99690 * 269.99833 * 14 13 12 24 24 C 1.52998 * 117.49772 * 193.92020 * 23 14 13 25 25 C 1.52994 * 117.49927 * 125.29702 * 23 14 13 26 26 N 1.29944 * 107.42129 * 359.97438 * 12 11 10 27 27 O 1.21296 * 110.25405 * 0.02562 * 26 12 11 28 28 H 1.09001 * 109.47465 * 299.99991 * 1 2 3 29 29 H 1.08996 * 109.47298 * 59.99946 * 1 2 3 30 30 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47357 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47021 * 299.99824 * 3 2 1 33 33 H 1.09002 * 109.47482 * 60.00261 * 3 2 1 34 34 H 1.09008 * 109.47369 * 299.99937 * 4 2 1 35 35 H 1.09004 * 109.47528 * 59.99892 * 4 2 1 36 36 H 1.09004 * 109.47644 * 180.02562 * 4 2 1 37 37 H 0.97003 * 120.00344 * 0.02562 * 8 6 5 38 38 H 1.09003 * 109.47363 * 60.00386 * 9 8 6 39 39 H 1.08999 * 109.47350 * 300.00280 * 9 8 6 40 40 H 1.09003 * 109.46700 * 209.99922 * 13 12 11 41 41 H 1.08994 * 109.46979 * 329.99147 * 13 12 11 42 42 H 0.96992 * 120.00048 * 174.96400 * 18 17 15 43 43 H 1.09000 * 115.54983 * 339.62690 * 23 14 13 44 44 H 1.09002 * 117.50114 * 0.02562 * 24 23 14 45 45 H 1.08998 * 117.49379 * 145.01674 * 24 23 14 46 46 H 1.09001 * 117.50163 * 214.97781 * 25 23 14 47 47 H 1.09001 * 117.49847 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0672 -2.6653 2.4171 9 6 1.6740 -4.0668 2.5831 10 6 2.2641 -4.6062 3.8607 11 7 1.7090 -4.5819 5.0484 12 6 2.5910 -5.1753 5.8724 13 6 2.4195 -5.3952 7.3534 14 7 1.7743 -6.6902 7.5833 15 6 2.5365 -7.8174 7.7363 16 1 2.2055 -8.7545 7.3137 17 6 3.7345 -7.7556 8.4347 18 7 3.9546 -6.7694 9.2782 19 14 5.0346 -9.0721 8.1776 20 1 5.4505 -9.0852 6.7521 21 1 6.2115 -8.7796 9.0345 22 1 4.4748 -10.3984 8.5421 23 6 0.3134 -6.7791 7.6495 24 6 -0.2912 -8.0688 8.2080 25 6 -0.3773 -7.7696 6.7100 26 7 3.6180 -5.5242 5.1568 27 8 3.4502 -5.2061 3.9984 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7216 -1.2491 37 1 2.6263 -2.2363 3.0836 38 1 2.0413 -4.6498 1.7384 39 1 0.5872 -4.1365 2.6275 40 1 3.3960 -5.3848 7.8376 41 1 1.7994 -4.6012 7.7691 42 1 4.7591 -6.7650 9.8199 43 1 -0.2051 -5.8450 7.8655 44 1 0.3979 -8.8510 8.5266 45 1 -1.2077 -7.9833 8.7918 46 1 -1.3504 -7.4874 6.3083 47 1 0.2552 -8.3548 6.0424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283232725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:30 Heat of formation + Delta-G solvation = 19.858811 kcal Electronic energy + Delta-G solvation = -29450.261298 eV Core-core repulsion = 25251.931317 eV Total energy + Delta-G solvation = -4198.329981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.59962 -41.83282 -38.95381 -38.66702 -37.00723 -36.33785 -35.34476 -34.94952 -33.48845 -32.37336 -28.81594 -28.56827 -28.29593 -28.24409 -26.05523 -24.46532 -23.48007 -22.99617 -22.46838 -21.69338 -21.17934 -19.54909 -19.15746 -18.71715 -18.04290 -17.66684 -17.38667 -17.34332 -16.52477 -16.34959 -15.94109 -15.78665 -15.55324 -15.25749 -14.98209 -14.72774 -14.40382 -14.31248 -13.77038 -13.41613 -13.30078 -13.19047 -13.02517 -12.86608 -12.84266 -12.82176 -12.78816 -12.56335 -12.46822 -12.41778 -12.30573 -12.23388 -12.09820 -11.96353 -11.53579 -11.35992 -11.25945 -11.07125 -10.85233 -10.53453 -10.43724 -8.61206 -8.01309 -5.60639 0.02621 1.01109 1.34317 1.40219 1.42904 1.47709 1.69994 1.86358 2.38502 2.67638 3.07562 3.09729 3.21933 3.43561 3.47441 3.79433 3.85150 3.94644 3.99874 4.21064 4.25761 4.37833 4.44891 4.48387 4.60788 4.68286 4.68390 4.76209 4.77013 4.83146 4.88303 4.89856 4.93596 4.93809 5.01172 5.09871 5.20604 5.28343 5.32631 5.34923 5.38692 5.50650 5.53068 5.59781 6.21375 6.33872 6.98666 7.22389 7.31558 7.65209 8.17347 8.99027 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.002353 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.107885 B =11894.742838 C =12578.570264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.124 3.876 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.659 3.341 7 O -0.581 6.581 8 N -0.703 5.703 9 C 0.253 3.747 10 C 0.144 3.856 11 N -0.461 5.461 12 C 0.163 3.837 13 C 0.228 3.772 14 N -0.550 5.550 15 C -0.269 4.269 16 H 0.050 0.950 17 C -0.017 4.017 18 N -0.908 5.908 19 Si 0.951 3.049 20 H -0.287 1.287 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.104 3.896 24 C -0.185 4.185 25 C -0.205 4.205 26 N -0.396 5.396 27 O 0.086 5.914 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.416 0.584 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.259 0.741 43 H 0.110 0.890 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.759 15.275 -18.446 24.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.413 3.587 7 O -0.471 6.471 8 N -0.365 5.365 9 C 0.129 3.871 10 C -0.078 4.078 11 N -0.196 5.196 12 C -0.112 4.112 13 C 0.099 3.901 14 N -0.267 5.267 15 C -0.399 4.399 16 H 0.067 0.933 17 C -0.216 4.216 18 N -0.550 5.550 19 Si 0.779 3.221 20 H -0.213 1.213 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.004 4.004 24 C -0.223 4.223 25 C -0.245 4.245 26 N -0.102 5.102 27 O 0.025 5.975 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.252 0.748 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.127 0.873 44 H 0.092 0.908 45 H 0.126 0.874 46 H 0.124 0.876 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.530 14.827 -18.141 24.074 hybrid contribution 1.106 -0.876 0.335 1.450 sum -4.424 13.951 -17.806 23.049 Atomic orbital electron populations 1.22489 0.93764 1.03940 1.03619 1.22463 0.94736 0.92596 0.81367 1.21901 1.02422 0.90818 1.04315 1.22489 1.01674 1.02423 0.97184 1.86333 1.71502 1.22714 1.47697 1.17865 0.78446 0.80921 0.81507 1.90925 1.41648 1.70852 1.43685 1.44429 1.56138 1.11589 1.24384 1.19492 1.00552 0.79722 0.87306 1.28911 0.84738 0.96666 0.97481 1.71887 1.28763 1.19044 0.99933 1.27704 0.85492 0.95021 1.02958 1.19309 1.01543 0.87675 0.81551 1.43356 0.99935 1.04161 1.79261 1.18866 1.02083 0.89526 1.29391 0.93260 1.25767 1.01258 0.99336 0.95219 1.69919 1.27746 1.34111 1.23260 0.85600 0.79282 0.79802 0.77405 1.21324 1.20983 1.19705 1.21418 0.83514 0.93446 1.01981 1.23075 1.02221 1.01042 0.96003 1.23230 1.02020 1.06601 0.92658 1.74724 1.24734 1.20261 0.90484 1.85283 1.34791 1.54625 1.22799 0.92097 0.89010 0.91564 0.91297 0.87842 0.91372 0.91513 0.89045 0.91976 0.74819 0.85432 0.85776 0.88840 0.90840 0.93120 0.87273 0.90809 0.87411 0.87642 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 8.37 71.98 0.60 -2.13 16 2 C 0.12 1.91 1.13 -10.80 -0.01 1.90 16 3 C -0.14 -1.37 8.85 71.98 0.64 -0.73 16 4 C -0.18 -2.66 8.37 71.98 0.60 -2.06 16 5 O -0.37 -7.32 9.94 -55.47 -0.55 -7.88 16 6 C 0.66 14.29 8.06 129.79 1.05 15.34 16 7 O -0.58 -14.45 11.88 19.82 0.24 -14.22 16 8 N -0.70 -13.74 5.55 -594.60 -3.30 -17.05 16 9 C 0.25 5.06 6.30 85.63 0.54 5.60 16 10 C 0.14 4.17 7.88 88.38 0.70 4.87 16 11 N -0.46 -16.48 11.55 -303.21 -3.50 -19.98 16 12 C 0.16 6.97 7.80 138.46 1.08 8.05 16 13 C 0.23 10.74 5.96 85.63 0.51 11.25 16 14 N -0.55 -27.05 2.76 -682.36 -1.89 -28.94 16 15 C -0.27 -14.53 8.04 84.03 0.68 -13.86 16 16 H 0.05 2.75 7.23 -2.91 -0.02 2.73 16 17 C -0.02 -0.92 4.97 84.86 0.42 -0.50 16 18 N -0.91 -51.19 11.45 21.65 0.25 -50.94 16 19 Si 0.95 45.00 29.60 68.60 2.03 47.03 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 C 0.10 4.35 6.61 44.99 0.30 4.65 16 24 C -0.18 -7.13 9.81 30.59 0.30 -6.83 16 25 C -0.20 -7.68 10.09 30.59 0.31 -7.37 16 26 N -0.40 -17.10 12.16 -60.34 -0.73 -17.84 16 27 O 0.09 2.97 11.31 74.93 0.85 3.81 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.34 5.88 -2.39 -0.01 1.32 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 1.31 5.88 -2.38 -0.01 1.30 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.42 7.58 8.57 -92.71 -0.79 6.79 16 38 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.12 2.35 8.14 -2.39 -0.02 2.34 16 40 H 0.09 5.00 5.52 -2.39 -0.01 4.99 16 41 H 0.07 3.19 8.04 -2.39 -0.02 3.17 16 42 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 43 H 0.11 4.15 8.10 -2.39 -0.02 4.13 16 44 H 0.07 3.25 6.95 -2.39 -0.02 3.23 16 45 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 46 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 47 H 0.06 2.49 8.01 -2.39 -0.02 2.47 16 Total: -1.00 -66.33 391.82 1.30 -65.03 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.20 Total: 22.77 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 7.71 Total: 18.19 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -9.18 Total: -134.74 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.53 Total: -18.28 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.33 1.30 -65.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283232725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.894 kcal (2) G-P(sol) polarization free energy of solvation -66.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds