Wall clock time and date at job start Tue Mar 31 2020 21:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34236 * 116.99692 * 2 1 4 4 O 1.20823 * 119.99778 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99611 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47048 * 60.00358 * 5 3 2 7 7 C 1.52994 * 109.47222 * 299.99942 * 5 3 2 8 8 C 1.53004 * 109.46672 * 180.02562 * 5 3 2 9 9 C 1.53001 * 109.46822 * 180.02562 * 8 5 3 10 10 N 1.46500 * 109.47049 * 180.02562 * 9 8 5 11 11 C 1.34779 * 119.99738 * 179.97438 * 10 9 8 12 12 O 1.21589 * 120.00349 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99663 * 179.97438 * 11 10 9 14 14 C 1.40196 * 119.99563 * 179.97438 * 13 11 10 15 15 C 1.40395 * 125.97533 * 359.97438 * 14 13 11 16 16 C 1.35243 * 107.86535 * 179.71691 * 15 14 13 17 17 N 1.34960 * 107.86064 * 0.42509 * 16 15 14 18 18 C 1.46500 * 125.97985 * 179.83521 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71356 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31213 * 125.96849 * 179.97438 * 14 13 11 28 28 H 1.09005 * 109.46949 * 299.99920 * 1 2 3 29 29 H 1.09003 * 109.47324 * 59.99977 * 1 2 3 30 30 H 1.08999 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47285 * 179.97438 * 6 5 3 32 32 H 1.09006 * 109.47347 * 299.99369 * 6 5 3 33 33 H 1.09001 * 109.47624 * 59.99669 * 6 5 3 34 34 H 1.08999 * 109.47542 * 299.99888 * 7 5 3 35 35 H 1.09006 * 109.47136 * 60.00654 * 7 5 3 36 36 H 1.09008 * 109.47193 * 180.02562 * 7 5 3 37 37 H 1.08999 * 109.47318 * 60.00585 * 8 5 3 38 38 H 1.09001 * 109.47075 * 299.99765 * 8 5 3 39 39 H 1.08994 * 109.47616 * 59.99717 * 9 8 5 40 40 H 1.09001 * 109.47145 * 300.00003 * 9 8 5 41 41 H 0.96998 * 120.00159 * 359.97438 * 10 9 8 42 42 H 0.96998 * 119.99666 * 359.97438 * 13 11 10 43 43 H 1.08003 * 126.06887 * 0.02562 * 15 14 13 44 44 H 1.08007 * 126.06985 * 180.26350 * 16 15 14 45 45 H 1.09004 * 109.47078 * 4.72118 * 18 17 16 46 46 H 1.08993 * 109.47364 * 244.71890 * 18 17 16 47 47 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1138 0.5812 -1.2483 7 6 4.1128 0.5817 1.2501 8 6 4.0000 2.7422 0.0011 9 6 5.5279 2.8223 0.0011 10 7 5.9433 4.2272 0.0022 11 6 7.2537 4.5424 0.0028 12 8 8.0911 3.6609 0.0030 13 7 7.6358 5.8350 0.0033 14 6 8.9988 6.1629 0.0046 15 6 10.0665 5.2512 0.0059 16 6 11.2179 5.9605 0.0005 17 7 10.8966 7.2713 0.0054 18 6 11.8430 8.3895 0.0056 19 6 11.5462 9.2992 -1.1588 20 1 10.7334 9.0677 -1.8312 21 6 12.3120 10.4268 -1.3654 22 7 13.2983 10.7116 -0.5434 23 14 11.9435 11.5547 -2.8082 24 1 12.8992 12.6914 -2.8046 25 1 12.0814 10.7960 -4.0774 26 1 10.5571 12.0733 -2.6895 27 7 9.4998 7.3757 0.0047 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 5.2023 0.6386 -1.2482 32 1 3.8048 -0.4642 -1.2483 33 1 3.7244 1.0751 -2.1386 34 1 3.7228 1.0759 2.1399 35 1 3.8039 -0.4637 1.2502 36 1 5.2014 0.6391 1.2508 37 1 3.6100 3.2361 0.8911 38 1 3.6106 3.2365 -0.8889 39 1 5.9177 2.3285 -0.8890 40 1 5.9177 2.3279 0.8908 41 1 5.2752 4.9304 0.0024 42 1 6.9677 6.5382 0.0028 43 1 9.9830 4.1744 0.0058 44 1 12.2172 5.5508 -0.0041 45 1 12.8593 8.0054 -0.0835 46 1 11.7459 8.9477 0.9367 47 1 13.4896 10.1261 0.2060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286891989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:10 Heat of formation + Delta-G solvation = -41.505898 kcal Electronic energy + Delta-G solvation = -28279.433498 eV Core-core repulsion = 24078.442544 eV Total energy + Delta-G solvation = -4200.990954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.27421 -40.75439 -39.64481 -37.86544 -36.68471 -34.89019 -34.48016 -33.60767 -30.93454 -29.47087 -29.24016 -28.10045 -27.93685 -26.23639 -25.19335 -23.30035 -22.68368 -21.63847 -20.58723 -20.15409 -19.56853 -17.96225 -17.75518 -17.28210 -17.16028 -16.86857 -16.63817 -16.02702 -15.63478 -15.02844 -14.79095 -14.53359 -14.31139 -14.16722 -13.94654 -13.88495 -13.76099 -13.20568 -13.18275 -13.09951 -12.52159 -12.49143 -12.39867 -12.23436 -11.97001 -11.89766 -11.80158 -11.49021 -11.39067 -11.27141 -11.14109 -10.80115 -10.69717 -10.43641 -10.15317 -10.12963 -9.72348 -9.27602 -8.96362 -8.56649 -8.15970 -7.45437 -6.56510 -4.30455 1.72114 2.09473 2.41483 2.60925 3.06540 3.38709 3.40518 3.50802 3.60127 3.79733 3.97073 4.14899 4.20083 4.30358 4.42664 4.58015 4.62916 4.64971 4.69118 4.81671 5.01916 5.13445 5.15541 5.17161 5.22716 5.27570 5.41473 5.45007 5.49365 5.55601 5.73708 5.76890 5.77983 5.90138 6.16162 6.24487 6.44990 6.48772 6.67014 6.78839 6.98072 7.24966 7.44064 7.64904 7.86917 7.91287 8.36452 8.55615 8.58092 8.65486 9.37744 10.80951 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.001654 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.732798 B =16928.009400 C =17543.459329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.471 3.529 4 O -0.504 6.504 5 C -0.046 4.046 6 C -0.149 4.149 7 C -0.149 4.149 8 C -0.116 4.116 9 C 0.138 3.862 10 N -0.745 5.745 11 C 0.714 3.286 12 O -0.568 6.568 13 N -0.644 5.644 14 C 0.278 3.722 15 C -0.284 4.284 16 C 0.050 3.950 17 N -0.319 5.319 18 C 0.250 3.750 19 C -0.608 4.608 20 H 0.063 0.937 21 C 0.023 3.977 22 N -0.905 5.905 23 Si 1.077 2.923 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.285 1.285 27 N -0.306 5.306 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.398 0.602 42 H 0.407 0.593 43 H 0.162 0.838 44 H 0.167 0.833 45 H 0.046 0.954 46 H 0.034 0.966 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.174 -23.363 2.167 32.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.313 3.687 4 O -0.391 6.391 5 C -0.048 4.048 6 C -0.206 4.206 7 C -0.206 4.206 8 C -0.154 4.154 9 C 0.014 3.986 10 N -0.401 5.401 11 C 0.413 3.587 12 O -0.443 6.443 13 N -0.294 5.294 14 C 0.023 3.977 15 C -0.315 4.315 16 C -0.100 4.100 17 N -0.101 5.101 18 C 0.131 3.869 19 C -0.646 4.646 20 H 0.082 0.918 21 C -0.182 4.182 22 N -0.541 5.541 23 Si 0.904 3.096 24 H -0.205 1.205 25 H -0.213 1.213 26 H -0.212 1.212 27 N -0.136 5.136 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.232 0.768 42 H 0.242 0.758 43 H 0.180 0.820 44 H 0.184 0.816 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.325 -21.163 1.428 30.795 hybrid contribution -1.313 -1.435 0.774 2.093 sum -23.637 -22.599 2.201 32.776 Atomic orbital electron populations 1.23300 0.76231 1.03826 1.02641 1.86502 1.23422 1.33318 1.83917 1.23711 0.91754 0.81345 0.71893 1.90681 1.67106 1.36388 1.44961 1.20409 0.86857 0.97754 0.99786 1.21999 1.02676 1.01021 0.94910 1.21999 1.02671 1.01025 0.94895 1.21720 0.95072 0.93866 1.04716 1.21317 0.92915 0.81190 1.03171 1.44972 1.05360 1.08789 1.81028 1.15589 0.82789 0.82275 0.78032 1.90864 1.50136 1.46910 1.56405 1.41383 1.04727 1.06633 1.76619 1.18784 0.83517 0.92513 1.02842 1.21521 0.89070 1.01174 1.19748 1.22555 1.00076 0.84713 1.02623 1.48751 1.03020 1.05870 1.52431 1.19743 0.85220 0.82692 0.99195 1.22113 1.19672 1.10437 1.12376 0.91849 1.25917 0.93081 0.97058 1.02132 1.70850 1.28663 1.39554 1.14990 0.83419 0.76099 0.75777 0.74320 1.20535 1.21253 1.21169 1.77346 0.90223 1.17623 1.28451 0.91838 0.91836 0.87960 0.89989 0.90900 0.91799 0.91820 0.90904 0.89995 0.90019 0.90005 0.90782 0.90806 0.76805 0.75796 0.82020 0.81554 0.93633 0.94819 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.56 101.05 1.07 1.23 16 2 O -0.36 -2.51 10.37 -39.27 -0.41 -2.92 16 3 C 0.47 3.82 6.55 36.00 0.24 4.05 16 4 O -0.50 -5.46 15.73 -18.75 -0.29 -5.75 16 5 C -0.05 -0.28 0.74 -155.66 -0.11 -0.40 16 6 C -0.15 -0.77 8.05 37.16 0.30 -0.47 16 7 C -0.15 -0.76 8.05 37.15 0.30 -0.46 16 8 C -0.12 -0.76 3.67 -26.73 -0.10 -0.86 16 9 C 0.14 1.10 4.97 -4.04 -0.02 1.08 16 10 N -0.74 -7.20 5.56 -65.22 -0.36 -7.56 16 11 C 0.71 10.32 8.53 -86.91 -0.74 9.58 16 12 O -0.57 -10.00 13.47 5.29 0.07 -9.93 16 13 N -0.64 -10.03 5.46 -15.50 -0.08 -10.12 16 14 C 0.28 5.66 8.11 -154.36 -1.25 4.40 16 15 C -0.28 -5.71 9.61 -39.84 -0.38 -6.09 16 16 C 0.05 1.01 11.44 -17.24 -0.20 0.82 16 17 N -0.32 -7.54 3.67 -62.56 -0.23 -7.77 16 18 C 0.25 6.38 5.57 -5.19 -0.03 6.35 16 19 C -0.61 -17.23 9.24 -34.44 -0.32 -17.55 16 20 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 21 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 22 N -0.91 -26.46 13.65 55.43 0.76 -25.71 16 23 Si 1.08 25.05 29.90 -169.99 -5.08 19.97 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 27 N -0.31 -7.16 12.42 31.44 0.39 -6.77 16 28 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 29 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 30 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.40 6.43 -51.93 -0.33 0.06 16 32 H 0.07 0.33 8.11 -51.93 -0.42 -0.09 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.33 8.11 -51.93 -0.42 -0.09 16 36 H 0.08 0.39 6.43 -51.92 -0.33 0.05 16 37 H 0.08 0.56 8.10 -51.93 -0.42 0.13 16 38 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 39 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 40 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 41 H 0.40 2.83 8.49 -40.82 -0.35 2.48 16 42 H 0.41 5.14 8.84 -40.82 -0.36 4.78 16 43 H 0.16 3.16 5.91 -52.48 -0.31 2.85 16 44 H 0.17 2.75 8.06 -52.48 -0.42 2.32 16 45 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 46 H 0.03 0.89 8.00 -51.93 -0.42 0.48 16 47 H 0.27 7.63 7.22 -40.82 -0.29 7.34 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -36.31 393.20 -7.57 -43.88 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.90 Total: 4.53 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -1.35 Total: 2.23 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.47 Total: -57.93 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.63 Total: -18.61 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.31 -7.57 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286891989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.371 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds