Wall clock time and date at job start Tue Mar 31 2020 21:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34236 * 116.99692 * 2 1 4 4 O 1.20823 * 119.99778 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99611 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47048 * 60.00358 * 5 3 2 7 7 C 1.52994 * 109.47222 * 299.99942 * 5 3 2 8 8 C 1.53004 * 109.46672 * 180.02562 * 5 3 2 9 9 C 1.53001 * 109.46822 * 180.02562 * 8 5 3 10 10 N 1.46500 * 109.47049 * 180.02562 * 9 8 5 11 11 C 1.34779 * 119.99738 * 179.97438 * 10 9 8 12 12 O 1.21589 * 120.00349 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99663 * 179.97438 * 11 10 9 14 14 C 1.40196 * 119.99563 * 179.97438 * 13 11 10 15 15 C 1.40395 * 125.97533 * 359.97438 * 14 13 11 16 16 C 1.35243 * 107.86535 * 179.71691 * 15 14 13 17 17 N 1.34960 * 107.86064 * 0.42509 * 16 15 14 18 18 C 1.46500 * 125.97985 * 179.83521 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71356 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31213 * 125.96849 * 179.97438 * 14 13 11 28 28 H 1.09005 * 109.46949 * 299.99920 * 1 2 3 29 29 H 1.09003 * 109.47324 * 59.99977 * 1 2 3 30 30 H 1.08999 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47285 * 179.97438 * 6 5 3 32 32 H 1.09006 * 109.47347 * 299.99369 * 6 5 3 33 33 H 1.09001 * 109.47624 * 59.99669 * 6 5 3 34 34 H 1.08999 * 109.47542 * 299.99888 * 7 5 3 35 35 H 1.09006 * 109.47136 * 60.00654 * 7 5 3 36 36 H 1.09008 * 109.47193 * 180.02562 * 7 5 3 37 37 H 1.08999 * 109.47318 * 60.00585 * 8 5 3 38 38 H 1.09001 * 109.47075 * 299.99765 * 8 5 3 39 39 H 1.08994 * 109.47616 * 59.99717 * 9 8 5 40 40 H 1.09001 * 109.47145 * 300.00003 * 9 8 5 41 41 H 0.96998 * 120.00159 * 359.97438 * 10 9 8 42 42 H 0.96998 * 119.99666 * 359.97438 * 13 11 10 43 43 H 1.08003 * 126.06887 * 0.02562 * 15 14 13 44 44 H 1.08007 * 126.06985 * 180.26350 * 16 15 14 45 45 H 1.09004 * 109.47078 * 4.72118 * 18 17 16 46 46 H 1.08993 * 109.47364 * 244.71890 * 18 17 16 47 47 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1138 0.5812 -1.2483 7 6 4.1128 0.5817 1.2501 8 6 4.0000 2.7422 0.0011 9 6 5.5279 2.8223 0.0011 10 7 5.9433 4.2272 0.0022 11 6 7.2537 4.5424 0.0028 12 8 8.0911 3.6609 0.0030 13 7 7.6358 5.8350 0.0033 14 6 8.9988 6.1629 0.0046 15 6 10.0665 5.2512 0.0059 16 6 11.2179 5.9605 0.0005 17 7 10.8966 7.2713 0.0054 18 6 11.8430 8.3895 0.0056 19 6 11.5462 9.2992 -1.1588 20 1 10.7334 9.0677 -1.8312 21 6 12.3120 10.4268 -1.3654 22 7 13.2983 10.7116 -0.5434 23 14 11.9435 11.5547 -2.8082 24 1 12.8992 12.6914 -2.8046 25 1 12.0814 10.7960 -4.0774 26 1 10.5571 12.0733 -2.6895 27 7 9.4998 7.3757 0.0047 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 5.2023 0.6386 -1.2482 32 1 3.8048 -0.4642 -1.2483 33 1 3.7244 1.0751 -2.1386 34 1 3.7228 1.0759 2.1399 35 1 3.8039 -0.4637 1.2502 36 1 5.2014 0.6391 1.2508 37 1 3.6100 3.2361 0.8911 38 1 3.6106 3.2365 -0.8889 39 1 5.9177 2.3285 -0.8890 40 1 5.9177 2.3279 0.8908 41 1 5.2752 4.9304 0.0024 42 1 6.9677 6.5382 0.0028 43 1 9.9830 4.1744 0.0058 44 1 12.2172 5.5508 -0.0041 45 1 12.8593 8.0054 -0.0835 46 1 11.7459 8.9477 0.9367 47 1 13.4896 10.1261 0.2060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286891989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:09 Heat of formation + Delta-G solvation = -65.651095 kcal Electronic energy + Delta-G solvation = -28280.480513 eV Core-core repulsion = 24078.442544 eV Total energy + Delta-G solvation = -4202.037969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.28574 -41.85359 -40.90514 -38.48030 -37.35157 -36.40261 -35.53703 -35.35138 -32.65345 -31.00466 -30.14209 -28.57562 -28.34054 -28.05121 -25.89583 -25.05990 -23.66103 -22.76589 -22.10249 -21.39275 -20.39983 -19.25972 -19.04975 -18.38868 -18.23817 -17.77587 -17.43084 -17.03783 -16.86993 -16.20934 -15.92321 -15.66499 -15.57092 -15.44950 -14.98053 -14.82612 -14.65758 -14.52929 -14.14157 -13.89409 -13.72965 -13.67770 -13.65016 -13.20974 -12.95647 -12.87255 -12.61021 -12.57719 -12.42026 -12.02863 -11.98461 -11.94826 -11.89538 -11.78927 -11.66026 -11.29850 -11.15274 -10.99261 -10.68401 -10.18168 -9.78225 -9.12612 -8.75546 -6.54649 1.00552 1.07919 1.10964 1.51693 1.58182 1.66455 1.67805 1.79781 2.07443 2.38292 2.49530 3.02212 3.10135 3.48226 3.69069 3.72490 3.88844 4.06080 4.10110 4.16797 4.24170 4.29425 4.31562 4.55836 4.58758 4.68257 4.71676 4.77237 4.77783 4.80948 4.87056 4.88623 4.94294 4.97924 5.03149 5.11390 5.29079 5.32867 5.35964 5.47406 5.56525 5.81370 5.86728 5.97616 6.29109 6.43532 6.65640 6.69930 7.09478 7.21255 7.41032 8.59516 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.001654 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.732798 B =16928.009400 C =17543.459329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.537 6.537 5 C -0.044 4.044 6 C -0.147 4.147 7 C -0.147 4.147 8 C -0.106 4.106 9 C 0.138 3.862 10 N -0.724 5.724 11 C 0.713 3.287 12 O -0.598 6.598 13 N -0.638 5.638 14 C 0.287 3.713 15 C -0.289 4.289 16 C 0.055 3.945 17 N -0.345 5.345 18 C 0.260 3.740 19 C -0.622 4.622 20 H 0.045 0.955 21 C -0.019 4.019 22 N -0.923 5.923 23 Si 1.120 2.880 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.276 1.276 27 N -0.350 5.350 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.413 0.587 42 H 0.421 0.579 43 H 0.171 0.829 44 H 0.201 0.799 45 H 0.054 0.946 46 H 0.016 0.984 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.247 -24.773 1.584 34.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.315 3.685 4 O -0.427 6.427 5 C -0.046 4.046 6 C -0.204 4.204 7 C -0.204 4.204 8 C -0.144 4.144 9 C 0.015 3.985 10 N -0.381 5.381 11 C 0.412 3.588 12 O -0.476 6.476 13 N -0.290 5.290 14 C 0.031 3.969 15 C -0.320 4.320 16 C -0.093 4.093 17 N -0.127 5.127 18 C 0.140 3.860 19 C -0.660 4.660 20 H 0.063 0.937 21 C -0.218 4.218 22 N -0.559 5.559 23 Si 0.941 3.059 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.201 1.201 27 N -0.181 5.181 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.249 0.751 42 H 0.258 0.742 43 H 0.188 0.812 44 H 0.218 0.782 45 H 0.072 0.928 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.467 -22.620 0.860 32.605 hybrid contribution -1.125 -1.171 1.001 1.908 sum -24.592 -23.791 1.861 34.268 Atomic orbital electron populations 1.23546 0.75034 1.05692 1.02392 1.86498 1.24672 1.32723 1.83462 1.24072 0.92409 0.81144 0.70870 1.90666 1.67937 1.37393 1.46657 1.20437 0.85759 0.97562 1.00841 1.22005 1.02899 1.01324 0.94199 1.22006 1.02910 1.01319 0.94166 1.21608 0.93808 0.94393 1.04599 1.21448 0.93727 0.79903 1.03392 1.44886 1.03868 1.10178 1.79130 1.15739 0.83915 0.81366 0.77789 1.90833 1.51431 1.47510 1.57831 1.41413 1.03272 1.07750 1.76531 1.19097 0.85520 0.91735 1.00508 1.21719 0.89024 1.01478 1.19764 1.23180 1.01906 0.83433 1.00792 1.48534 1.03053 1.06324 1.54763 1.19407 0.86114 0.83117 0.97327 1.22304 1.19227 1.11470 1.13025 0.93655 1.27266 0.92378 0.98356 1.03827 1.70946 1.29631 1.39846 1.15504 0.82878 0.76450 0.74471 0.72123 1.19983 1.19645 1.20129 1.77262 0.90445 1.19422 1.30931 0.92099 0.92131 0.85089 0.89448 0.90156 0.92061 0.92003 0.90170 0.89428 0.90112 0.90199 0.90645 0.90542 0.75067 0.74226 0.81171 0.78177 0.92802 0.96617 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 113.37 1.20 1.42 16 2 O -0.36 -4.58 10.37 -51.47 -0.53 -5.12 16 3 C 0.47 7.16 6.55 71.24 0.47 7.63 16 4 O -0.54 -11.34 15.73 21.97 0.35 -11.00 16 5 C -0.04 -0.48 0.74 -52.93 -0.04 -0.51 16 6 C -0.15 -1.27 8.05 71.98 0.58 -0.69 16 7 C -0.15 -1.23 8.05 71.98 0.58 -0.66 16 8 C -0.11 -1.23 3.67 30.60 0.11 -1.11 16 9 C 0.14 1.94 4.97 86.38 0.43 2.37 16 10 N -0.72 -12.61 5.56 -478.52 -2.66 -15.27 16 11 C 0.71 19.51 8.53 179.05 1.53 21.03 16 12 O -0.60 -20.22 13.47 -4.00 -0.05 -20.27 16 13 N -0.64 -19.18 5.46 -321.22 -1.75 -20.93 16 14 C 0.29 11.55 8.11 133.31 1.08 12.63 16 15 C -0.29 -11.34 9.61 22.10 0.21 -11.12 16 16 C 0.05 2.18 11.44 83.52 0.96 3.13 16 17 N -0.34 -16.38 3.67 -351.84 -1.29 -17.67 16 18 C 0.26 13.48 5.57 85.64 0.48 13.96 16 19 C -0.62 -35.69 9.24 25.60 0.24 -35.46 16 20 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 21 C -0.02 -1.05 5.46 84.65 0.46 -0.58 16 22 N -0.92 -54.20 13.65 21.45 0.29 -53.91 16 23 Si 1.12 49.94 29.90 68.60 2.05 52.00 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 27 N -0.35 -16.49 12.42 -54.44 -0.68 -17.17 16 28 H 0.06 0.55 8.13 -2.38 -0.02 0.53 16 29 H 0.06 0.55 8.13 -2.39 -0.02 0.53 16 30 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.09 0.67 6.43 -2.39 -0.02 0.66 16 32 H 0.08 0.58 8.11 -2.38 -0.02 0.56 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.57 8.11 -2.38 -0.02 0.55 16 36 H 0.09 0.65 6.43 -2.38 -0.02 0.64 16 37 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 38 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 39 H 0.08 1.10 6.43 -2.39 -0.02 1.09 16 40 H 0.08 1.09 6.43 -2.39 -0.02 1.08 16 41 H 0.41 4.99 8.49 -92.71 -0.79 4.20 16 42 H 0.42 10.12 8.84 -92.71 -0.82 9.31 16 43 H 0.17 6.43 5.91 -2.91 -0.02 6.42 16 44 H 0.20 6.24 8.06 -2.91 -0.02 6.21 16 45 H 0.05 2.67 7.94 -2.39 -0.02 2.66 16 46 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 47 H 0.26 15.14 7.22 -92.71 -0.67 14.47 16 Total: -1.00 -78.08 393.20 3.51 -74.58 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -0.49 Total: 22.73 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 8.28 Total: 12.03 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -6.09 Total: -124.94 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.24 Total: -36.39 kcal Atomic # 14 Polarization: 49.94 SS G_CDS: 2.05 Total: 52.00 kcal Total: -78.08 3.51 -74.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286891989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.925 kcal (2) G-P(sol) polarization free energy of solvation -78.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds