Wall clock time and date at job start Tue Mar 31 2020 21:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47103 * 2 1 4 4 H 1.09005 * 109.47072 * 55.00500 * 3 2 1 5 5 C 1.53001 * 109.47298 * 295.00543 * 3 2 1 6 6 C 1.52998 * 109.46976 * 175.00069 * 3 2 1 7 7 O 1.42904 * 109.47116 * 185.00009 * 6 3 2 8 8 N 1.41598 * 114.00166 * 180.02562 * 7 6 3 9 9 C 1.34773 * 120.00257 * 180.02562 * 8 7 6 10 10 O 1.21366 * 119.99662 * 359.97438 * 9 8 7 11 11 C 1.49346 * 120.00253 * 180.02562 * 9 8 7 12 12 O 1.21378 * 119.99625 * 359.97438 * 11 9 8 13 13 N 1.34778 * 119.99926 * 180.02562 * 11 9 8 14 14 C 1.39924 * 119.99737 * 179.97438 * 13 11 9 15 15 C 1.40464 * 125.98542 * 0.26601 * 14 13 11 16 16 C 1.35210 * 107.87176 * 180.16660 * 15 14 13 17 17 C 1.50703 * 126.06363 * 179.85069 * 16 15 14 18 18 N 1.34990 * 107.87542 * 359.58827 * 16 15 14 19 19 C 1.46499 * 125.97206 * 180.24364 * 18 16 15 20 20 C 1.50695 * 109.47513 * 90.00038 * 19 18 16 21 21 H 1.08008 * 119.99806 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00371 * 180.02562 * 20 19 18 23 23 N 1.31511 * 119.99830 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00113 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47332 * 59.99491 * 24 22 20 26 26 H 1.48505 * 109.46974 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47010 * 299.99454 * 24 22 20 28 28 N 1.31278 * 125.98159 * 179.97438 * 14 13 11 29 29 H 1.09000 * 109.47511 * 59.99859 * 1 2 3 30 30 H 1.09000 * 109.47232 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47217 * 299.99478 * 1 2 3 32 32 H 1.09003 * 109.46754 * 240.00262 * 2 1 3 33 33 H 1.08990 * 109.47580 * 120.00296 * 2 1 3 34 34 H 1.08993 * 109.47374 * 59.99609 * 5 3 2 35 35 H 1.08999 * 109.46786 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46586 * 299.99392 * 5 3 2 37 37 H 1.09003 * 109.47108 * 65.00382 * 6 3 2 38 38 H 1.08996 * 109.47343 * 305.00169 * 6 3 2 39 39 H 0.96999 * 120.00018 * 359.97438 * 8 7 6 40 40 H 0.96999 * 120.00051 * 359.97438 * 13 11 9 41 41 H 1.08006 * 126.06397 * 0.02562 * 15 14 13 42 42 H 1.09002 * 109.47152 * 269.69117 * 17 16 15 43 43 H 1.09001 * 109.46980 * 149.69217 * 17 16 15 44 44 H 1.09004 * 109.47113 * 29.69198 * 17 16 15 45 45 H 1.09000 * 109.46677 * 209.99892 * 19 18 16 46 46 H 1.08995 * 109.46883 * 329.99525 * 19 18 16 47 47 H 0.96998 * 120.00082 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 8 4.0315 2.7899 0.2428 8 7 5.4377 2.9032 0.3647 9 6 6.0080 4.1185 0.4832 10 8 5.3164 5.1158 0.4850 11 6 7.4912 4.2381 0.6112 12 8 8.1829 3.2407 0.6089 13 7 8.0615 5.4535 0.7302 14 6 9.4510 5.5655 0.8507 15 6 10.3674 4.5009 0.8570 16 6 11.6075 5.0216 0.9953 17 6 12.8956 4.2417 1.0548 18 7 11.4876 6.3644 1.0647 19 6 12.5882 7.3201 1.2117 20 6 13.0819 7.7313 -0.1514 21 1 12.6221 7.3214 -1.0386 22 6 14.1212 8.6300 -0.2661 23 7 14.6814 9.1288 0.8141 24 14 14.7326 9.1403 -1.9558 25 1 13.6239 9.7754 -2.7124 26 1 15.8483 10.1090 -1.8068 27 1 15.2114 7.9425 -2.6914 28 7 10.1270 6.6842 0.9721 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8898 34 1 0.5489 2.1253 -1.3968 35 1 1.9989 3.1541 -1.3074 36 1 2.0698 1.5876 -2.1491 37 1 4.0029 0.9836 -0.7597 38 1 3.8570 0.8800 1.0112 39 1 5.9904 2.1061 0.3637 40 1 7.5087 6.2505 0.7324 41 1 10.1243 3.4522 0.7695 42 1 13.1224 3.9933 2.0916 43 1 13.7043 4.8436 0.6401 44 1 12.7919 3.3241 0.4756 45 1 12.2361 8.1994 1.7511 46 1 13.4019 6.8545 1.7676 47 1 15.4123 9.7613 0.7335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293267595.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:48 Heat of formation + Delta-G solvation = 3.856669 kcal Electronic energy + Delta-G solvation = -28097.699397 eV Core-core repulsion = 23898.675511 eV Total energy + Delta-G solvation = -4199.023886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.13632 -40.23257 -38.91501 -38.12726 -36.37407 -35.18083 -33.44594 -32.56843 -31.55305 -30.94172 -30.24148 -27.33073 -26.96394 -26.47122 -25.19008 -23.78615 -22.90175 -21.45480 -20.59741 -19.99349 -19.71129 -18.67127 -17.69872 -16.77138 -16.68613 -16.56492 -16.10044 -15.91537 -15.39542 -15.25175 -15.00000 -14.66550 -14.48987 -14.23934 -14.07583 -13.83913 -13.36442 -13.15692 -12.73990 -12.52247 -12.50892 -12.43948 -12.27860 -12.23839 -11.99525 -11.58718 -11.50884 -11.48260 -11.36381 -11.17469 -11.11781 -11.06751 -10.83997 -10.61690 -10.27836 -10.03336 -9.68922 -9.63106 -9.38371 -8.66958 -8.08204 -7.61935 -6.28744 -4.36766 1.07130 1.10332 2.58690 2.70756 2.94869 3.22015 3.26217 3.30196 3.58986 3.60709 3.94990 4.19931 4.22857 4.25610 4.29851 4.49483 4.68818 4.79283 4.92671 5.05109 5.07493 5.10312 5.18822 5.28431 5.46656 5.47681 5.52610 5.59067 5.60599 5.80333 5.82169 5.91953 6.01564 6.04341 6.21299 6.23810 6.36185 6.49890 6.68995 6.84631 6.99371 7.21813 7.35124 7.62909 7.63871 7.83412 7.84498 7.94811 8.50988 8.69847 9.29917 10.78666 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027305 B = 0.001703 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.206985 B =16435.146723 C =16794.020274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.083 4.083 4 H 0.084 0.916 5 C -0.152 4.152 6 C 0.031 3.969 7 O -0.133 6.133 8 N -0.571 5.571 9 C 0.527 3.473 10 O -0.496 6.496 11 C 0.528 3.472 12 O -0.496 6.496 13 N -0.593 5.593 14 C 0.256 3.744 15 C -0.288 4.288 16 C 0.094 3.906 17 C -0.089 4.089 18 N -0.311 5.311 19 C 0.257 3.743 20 C -0.539 4.539 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.891 5.891 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 N -0.308 5.308 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.421 0.579 40 H 0.425 0.575 41 H 0.161 0.839 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.392 -19.396 -0.301 28.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.103 4.103 4 H 0.103 0.897 5 C -0.209 4.209 6 C -0.046 4.046 7 O -0.137 6.137 8 N -0.274 5.274 9 C 0.308 3.692 10 O -0.368 6.368 11 C 0.307 3.693 12 O -0.369 6.369 13 N -0.241 5.241 14 C 0.004 3.996 15 C -0.319 4.319 16 C -0.037 4.037 17 C -0.148 4.148 18 N -0.093 5.093 19 C 0.140 3.860 20 C -0.578 4.578 21 H 0.083 0.917 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.734 3.266 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.199 1.199 28 N -0.138 5.138 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.263 0.737 40 H 0.263 0.737 41 H 0.178 0.822 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.380 -17.722 -0.148 27.770 hybrid contribution 0.275 -0.629 -0.952 1.174 sum -21.106 -18.351 -1.100 27.990 Atomic orbital electron populations 1.21801 0.95035 1.01914 1.02313 1.21511 0.96632 0.94793 1.02507 1.21142 0.91267 0.97542 1.00383 0.89727 1.21902 1.01660 1.01345 0.95974 1.23244 0.96025 0.83641 1.01700 1.90600 1.00528 1.26296 1.96288 1.46960 0.96486 1.09224 1.74748 1.19836 0.88114 0.82673 0.78593 1.90823 1.63222 1.35750 1.47049 1.19308 0.87060 0.83830 0.79120 1.90733 1.62906 1.36095 1.47204 1.41852 1.04622 1.09102 1.68566 1.18833 0.82783 0.93592 1.04383 1.21236 0.89540 1.00151 1.20958 1.21084 0.96971 0.85111 1.00555 1.20399 0.92832 0.99017 1.02529 1.49105 1.03977 1.05195 1.51068 1.19753 0.80234 0.87201 0.98845 1.21272 1.17695 1.27102 0.91721 0.91721 1.24918 0.95837 0.95253 0.97657 1.69905 1.24451 1.30282 1.28186 0.86401 0.78386 0.78551 0.83280 1.19954 1.20932 1.19917 1.77346 0.88945 1.19508 1.28043 0.92187 0.92463 0.92505 0.91487 0.91567 0.91986 0.91651 0.92538 0.91522 0.91560 0.73661 0.73745 0.82151 0.90931 0.89762 0.90503 0.92804 0.92584 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.67 37.16 0.36 -0.25 16 2 C -0.12 -0.48 5.40 -26.73 -0.14 -0.63 16 3 C -0.08 -0.47 2.63 -90.62 -0.24 -0.71 16 4 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.15 -0.94 8.85 37.16 0.33 -0.61 16 6 C 0.03 0.20 5.61 37.16 0.21 0.41 16 7 O -0.13 -1.39 10.64 -29.65 -0.32 -1.70 16 8 N -0.57 -5.97 6.38 30.88 0.20 -5.77 16 9 C 0.53 6.95 8.03 -11.64 -0.09 6.85 16 10 O -0.50 -7.83 16.88 -12.70 -0.21 -8.04 16 11 C 0.53 7.58 7.85 -11.63 -0.09 7.49 16 12 O -0.50 -7.52 13.60 5.47 0.07 -7.45 16 13 N -0.59 -9.52 5.43 -11.58 -0.06 -9.58 16 14 C 0.26 5.07 8.10 -154.55 -1.25 3.82 16 15 C -0.29 -5.55 9.51 -39.82 -0.38 -5.93 16 16 C 0.09 1.89 6.92 -82.28 -0.57 1.32 16 17 C -0.09 -1.43 9.89 36.01 0.36 -1.08 16 18 N -0.31 -7.15 3.59 -58.33 -0.21 -7.36 16 19 C 0.26 6.43 5.81 -5.20 -0.03 6.40 16 20 C -0.54 -14.57 9.39 -34.44 -0.32 -14.90 16 21 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 24 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 28 N -0.31 -6.98 12.60 31.41 0.40 -6.58 16 29 H 0.06 0.24 6.57 -51.93 -0.34 -0.10 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 35 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.42 3.34 8.01 -40.82 -0.33 3.02 16 40 H 0.42 6.21 8.29 -40.82 -0.34 5.87 16 41 H 0.16 2.87 5.91 -52.48 -0.31 2.56 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.46 7.71 -51.93 -0.40 1.06 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.06 1.38 7.65 -51.93 -0.40 0.98 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 400.60 15.07 6.04 6.04 Total: -1.00 -32.06 400.60 -7.41 -39.46 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.06 Total: 5.17 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -1.97 Total: 3.89 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 1.06 Total: -53.21 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.46 Total: -17.19 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.06 -7.41 -39.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293267595.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.322 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds