Wall clock time and date at job start Tue Mar 31 2020 21:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99882 * 2 1 4 4 C 1.53005 * 109.46909 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47163 * 59.99817 * 4 3 2 6 6 C 1.52998 * 109.47238 * 299.99969 * 4 3 2 7 7 C 1.52999 * 109.47355 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.47452 * 180.02562 * 7 4 3 9 9 C 1.34778 * 120.00367 * 180.02562 * 8 7 4 10 10 O 1.21361 * 119.99633 * 359.97438 * 9 8 7 11 11 C 1.49338 * 120.00273 * 179.97438 * 9 8 7 12 12 O 1.21389 * 119.99925 * 0.02562 * 11 9 8 13 13 N 1.34770 * 120.00038 * 179.97438 * 11 9 8 14 14 C 1.39936 * 119.99877 * 179.97438 * 13 11 9 15 15 C 1.40453 * 125.98062 * 359.97438 * 14 13 11 16 16 C 1.35215 * 107.86384 * 179.73491 * 15 14 13 17 17 N 1.34979 * 107.87970 * 0.42460 * 16 15 14 18 18 C 1.46500 * 125.97555 * 179.83561 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71172 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31273 * 125.97577 * 179.97438 * 14 13 11 28 28 H 1.09002 * 109.47284 * 300.00241 * 1 2 3 29 29 H 1.09004 * 109.46982 * 59.99824 * 1 2 3 30 30 H 1.08999 * 109.47503 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47869 * 60.00138 * 3 2 1 32 32 H 1.08999 * 109.47261 * 299.99642 * 3 2 1 33 33 H 1.08996 * 109.47252 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.47138 * 300.00587 * 5 4 3 35 35 H 1.09002 * 109.46950 * 59.99585 * 5 4 3 36 36 H 1.08995 * 109.46904 * 299.99816 * 6 4 3 37 37 H 1.08998 * 109.47000 * 59.99895 * 6 4 3 38 38 H 1.08996 * 109.47106 * 179.97438 * 6 4 3 39 39 H 1.08995 * 109.47185 * 59.99941 * 7 4 3 40 40 H 1.09002 * 109.46708 * 300.00384 * 7 4 3 41 41 H 0.96999 * 119.99985 * 359.97438 * 8 7 4 42 42 H 0.96998 * 120.00451 * 0.02562 * 13 11 9 43 43 H 1.08000 * 126.07021 * 359.97438 * 15 14 13 44 44 H 1.08004 * 126.05929 * 180.25923 * 16 15 14 45 45 H 1.09004 * 109.47078 * 4.71934 * 18 17 16 46 46 H 1.08993 * 109.47364 * 244.71705 * 18 17 16 47 47 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9875 0.4251 -1.2483 6 6 3.9864 0.4256 1.2502 7 6 4.1579 2.5823 0.0000 8 7 5.6182 2.4666 0.0000 9 6 6.3823 3.5769 0.0000 10 8 5.8603 4.6726 -0.0005 11 6 7.8710 3.4590 0.0006 12 8 8.3930 2.3631 0.0006 13 7 8.6349 4.5693 0.0001 14 6 10.0299 4.4587 0.0011 15 6 10.7627 3.2605 0.0033 16 6 12.0770 3.5781 -0.0022 17 7 12.1781 4.9241 0.0018 18 6 13.4248 5.6935 0.0016 19 6 13.4249 6.6496 -1.1634 20 1 12.5805 6.6812 -1.8360 21 6 14.5029 7.4838 -1.3705 22 7 15.5288 7.4491 -0.5483 23 14 14.5027 8.6694 -2.8140 24 1 15.7638 9.4535 -2.8109 25 1 14.3984 7.9045 -4.0827 26 1 13.3455 9.5926 -2.6961 27 7 10.8826 5.4568 0.0003 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8465 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 5.0740 0.3394 -1.2481 34 1 3.5440 -0.5707 -1.2483 35 1 3.6661 0.9658 -2.1385 36 1 3.6645 0.9667 2.1399 37 1 3.5431 -0.5701 1.2502 38 1 5.0730 0.3391 1.2504 39 1 3.8360 3.1238 0.8895 40 1 3.8365 3.1226 -0.8904 41 1 6.0354 1.5909 0.0008 42 1 8.2179 5.4450 -0.0003 43 1 10.3497 2.2626 0.0048 44 1 12.9000 2.8787 -0.0062 45 1 14.2717 5.0130 -0.0870 46 1 13.5056 6.2548 0.9324 47 1 15.5288 6.8336 0.2014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341034572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:47 Heat of formation + Delta-G solvation = -38.617658 kcal Electronic energy + Delta-G solvation = -28411.222137 eV Core-core repulsion = 24210.356426 eV Total energy + Delta-G solvation = -4200.865711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.19762 -40.40478 -39.33429 -38.45123 -36.91717 -35.17740 -33.81866 -33.44528 -30.99536 -29.50185 -27.98768 -27.84564 -27.70258 -26.60824 -25.81413 -24.30910 -22.88139 -21.38430 -20.60994 -20.02225 -19.54883 -18.40298 -17.23656 -17.18334 -16.78882 -16.53602 -16.46060 -16.17768 -15.72404 -15.28659 -15.18421 -14.97432 -14.41179 -14.23644 -13.85435 -13.80053 -13.78554 -13.65747 -13.31347 -13.10037 -12.54328 -12.35314 -12.29202 -12.21795 -12.08058 -12.02984 -11.54127 -11.38942 -11.37255 -11.19839 -11.09619 -10.85242 -10.59855 -10.17345 -10.16823 -10.11275 -9.65369 -9.59638 -9.04813 -8.60288 -8.32597 -7.65504 -6.60512 -4.34886 1.13615 1.95374 2.56502 2.95010 2.99782 3.32747 3.37469 3.39550 3.58060 3.58216 3.77777 4.16707 4.19813 4.31296 4.36996 4.40015 4.73560 4.80021 4.81315 4.93828 5.00978 5.13067 5.15931 5.18511 5.23678 5.31968 5.34155 5.48569 5.50451 5.58676 5.60601 5.83335 5.88020 5.90590 5.99962 6.22439 6.31143 6.49974 6.61858 6.69280 6.81533 7.15141 7.25686 7.53085 7.64963 7.74933 7.87723 8.30699 8.43207 8.58188 9.33276 10.77254 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030154 B = 0.001729 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.332175 B =16186.965683 C =16651.003854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.074 3.926 4 C -0.075 4.075 5 C -0.142 4.142 6 C -0.142 4.142 7 C 0.128 3.872 8 N -0.696 5.696 9 C 0.516 3.484 10 O -0.514 6.514 11 C 0.513 3.487 12 O -0.499 6.499 13 N -0.598 5.598 14 C 0.252 3.748 15 C -0.283 4.283 16 C 0.053 3.947 17 N -0.313 5.313 18 C 0.248 3.752 19 C -0.610 4.610 20 H 0.064 0.936 21 C 0.024 3.976 22 N -0.904 5.904 23 Si 1.077 2.923 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.285 1.285 27 N -0.292 5.292 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.415 0.585 42 H 0.424 0.576 43 H 0.163 0.837 44 H 0.170 0.830 45 H 0.048 0.952 46 H 0.036 0.964 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.454 -15.916 2.172 31.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.003 4.003 4 C -0.076 4.076 5 C -0.200 4.200 6 C -0.200 4.200 7 C 0.004 3.996 8 N -0.351 5.351 9 C 0.296 3.704 10 O -0.389 6.389 11 C 0.293 3.707 12 O -0.373 6.373 13 N -0.246 5.246 14 C -0.001 4.001 15 C -0.314 4.314 16 C -0.097 4.097 17 N -0.094 5.094 18 C 0.130 3.870 19 C -0.648 4.648 20 H 0.082 0.918 21 C -0.181 4.181 22 N -0.539 5.539 23 Si 0.904 3.096 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.211 1.211 27 N -0.123 5.123 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.253 0.747 42 H 0.261 0.739 43 H 0.180 0.820 44 H 0.188 0.812 45 H 0.065 0.935 46 H 0.054 0.946 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.213 -13.568 1.430 29.551 hybrid contribution -1.216 -1.738 0.780 2.260 sum -27.429 -15.306 2.210 31.489 Atomic orbital electron populations 1.22752 0.80846 1.02865 1.00057 1.87857 1.19649 1.27404 1.95414 1.22412 0.92217 0.85008 1.00692 1.20799 0.93841 0.94824 0.98118 1.21856 1.01286 1.01058 0.95780 1.21850 1.01279 1.01057 0.95767 1.21413 0.78594 0.96239 1.03304 1.45664 1.06767 1.09454 1.73233 1.19849 0.87485 0.84952 0.78075 1.90799 1.74430 1.26167 1.47554 1.19908 0.87648 0.84463 0.78691 1.90710 1.73733 1.26114 1.46699 1.41990 1.02789 1.10363 1.69500 1.19014 0.83143 0.93534 1.04368 1.21526 0.91162 0.98992 1.19761 1.22582 0.98426 0.86375 1.02295 1.48869 1.05063 1.04040 1.51477 1.19812 0.76010 0.91754 0.99412 1.22104 1.07271 1.23105 1.12344 0.91776 1.25924 0.91761 0.98253 1.02136 1.70857 1.30992 1.37140 1.14902 0.83419 0.76284 0.75683 0.74263 1.20498 1.21221 1.21091 1.77432 0.88113 1.19700 1.27044 0.94031 0.94015 0.89533 0.92807 0.92787 0.92289 0.91113 0.92369 0.92385 0.91117 0.92300 0.90455 0.90442 0.74722 0.73879 0.81990 0.81236 0.93452 0.94594 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.38 -2.58 9.35 -35.23 -0.33 -2.91 16 3 C 0.07 0.41 4.81 37.16 0.18 0.59 16 4 C -0.08 -0.45 0.61 -154.51 -0.09 -0.54 16 5 C -0.14 -0.88 8.15 37.16 0.30 -0.58 16 6 C -0.14 -0.87 8.16 37.16 0.30 -0.56 16 7 C 0.13 0.91 4.56 -4.04 -0.02 0.89 16 8 N -0.70 -6.21 4.95 -60.77 -0.30 -6.51 16 9 C 0.52 6.25 7.89 -11.64 -0.09 6.16 16 10 O -0.51 -7.21 16.48 5.49 0.09 -7.12 16 11 C 0.51 7.38 7.85 -11.64 -0.09 7.29 16 12 O -0.50 -7.71 13.60 5.46 0.07 -7.64 16 13 N -0.60 -9.71 5.43 -11.58 -0.06 -9.78 16 14 C 0.25 5.03 8.10 -154.55 -1.25 3.78 16 15 C -0.28 -5.37 9.60 -39.82 -0.38 -5.75 16 16 C 0.05 1.02 11.43 -17.24 -0.20 0.83 16 17 N -0.31 -7.18 3.67 -62.56 -0.23 -7.41 16 18 C 0.25 6.20 5.57 -5.19 -0.03 6.17 16 19 C -0.61 -17.07 9.24 -34.44 -0.32 -17.39 16 20 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 21 C 0.02 0.67 5.46 -17.82 -0.10 0.57 16 22 N -0.90 -26.15 13.65 55.43 0.76 -25.39 16 23 Si 1.08 24.89 29.90 -169.99 -5.08 19.80 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 N -0.29 -6.74 12.42 31.41 0.39 -6.35 16 28 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.37 6.86 -51.93 -0.36 0.01 16 34 H 0.07 0.47 7.68 -51.93 -0.40 0.07 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.46 7.68 -51.93 -0.40 0.06 16 38 H 0.06 0.36 6.86 -51.93 -0.36 0.00 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.41 3.35 5.63 -40.82 -0.23 3.12 16 42 H 0.42 6.32 8.29 -40.82 -0.34 5.98 16 43 H 0.16 2.86 5.91 -52.49 -0.31 2.55 16 44 H 0.17 2.61 8.06 -52.48 -0.42 2.19 16 45 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 46 H 0.04 0.93 8.00 -51.93 -0.42 0.52 16 47 H 0.27 7.54 7.22 -40.82 -0.29 7.24 16 LS Contribution 394.46 15.07 5.94 5.94 Total: -1.00 -33.21 394.46 -6.37 -39.58 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.95 Total: 5.11 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.68 Total: 2.69 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.55 Total: -55.45 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.16 Total: -17.67 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.21 -6.37 -39.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341034572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.962 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds