Wall clock time and date at job start Tue Mar 31 2020 21:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99882 * 2 1 4 4 C 1.53005 * 109.46909 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47163 * 59.99817 * 4 3 2 6 6 C 1.52998 * 109.47238 * 299.99969 * 4 3 2 7 7 C 1.52999 * 109.47355 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.47452 * 180.02562 * 7 4 3 9 9 C 1.34778 * 120.00367 * 180.02562 * 8 7 4 10 10 O 1.21361 * 119.99633 * 359.97438 * 9 8 7 11 11 C 1.49338 * 120.00273 * 179.97438 * 9 8 7 12 12 O 1.21389 * 119.99925 * 0.02562 * 11 9 8 13 13 N 1.34770 * 120.00038 * 179.97438 * 11 9 8 14 14 C 1.39936 * 119.99877 * 179.97438 * 13 11 9 15 15 C 1.40453 * 125.98062 * 359.97438 * 14 13 11 16 16 C 1.35215 * 107.86384 * 179.73491 * 15 14 13 17 17 N 1.34979 * 107.87970 * 0.42460 * 16 15 14 18 18 C 1.46500 * 125.97555 * 179.83561 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71172 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31273 * 125.97577 * 179.97438 * 14 13 11 28 28 H 1.09002 * 109.47284 * 300.00241 * 1 2 3 29 29 H 1.09004 * 109.46982 * 59.99824 * 1 2 3 30 30 H 1.08999 * 109.47503 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47869 * 60.00138 * 3 2 1 32 32 H 1.08999 * 109.47261 * 299.99642 * 3 2 1 33 33 H 1.08996 * 109.47252 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.47138 * 300.00587 * 5 4 3 35 35 H 1.09002 * 109.46950 * 59.99585 * 5 4 3 36 36 H 1.08995 * 109.46904 * 299.99816 * 6 4 3 37 37 H 1.08998 * 109.47000 * 59.99895 * 6 4 3 38 38 H 1.08996 * 109.47106 * 179.97438 * 6 4 3 39 39 H 1.08995 * 109.47185 * 59.99941 * 7 4 3 40 40 H 1.09002 * 109.46708 * 300.00384 * 7 4 3 41 41 H 0.96999 * 119.99985 * 359.97438 * 8 7 4 42 42 H 0.96998 * 120.00451 * 0.02562 * 13 11 9 43 43 H 1.08000 * 126.07021 * 359.97438 * 15 14 13 44 44 H 1.08004 * 126.05929 * 180.25923 * 16 15 14 45 45 H 1.09004 * 109.47078 * 4.71934 * 18 17 16 46 46 H 1.08993 * 109.47364 * 244.71705 * 18 17 16 47 47 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9875 0.4251 -1.2483 6 6 3.9864 0.4256 1.2502 7 6 4.1579 2.5823 0.0000 8 7 5.6182 2.4666 0.0000 9 6 6.3823 3.5769 0.0000 10 8 5.8603 4.6726 -0.0005 11 6 7.8710 3.4590 0.0006 12 8 8.3930 2.3631 0.0006 13 7 8.6349 4.5693 0.0001 14 6 10.0299 4.4587 0.0011 15 6 10.7627 3.2605 0.0033 16 6 12.0770 3.5781 -0.0022 17 7 12.1781 4.9241 0.0018 18 6 13.4248 5.6935 0.0016 19 6 13.4249 6.6496 -1.1634 20 1 12.5805 6.6812 -1.8360 21 6 14.5029 7.4838 -1.3705 22 7 15.5288 7.4491 -0.5483 23 14 14.5027 8.6694 -2.8140 24 1 15.7638 9.4535 -2.8109 25 1 14.3984 7.9045 -4.0827 26 1 13.3455 9.5926 -2.6961 27 7 10.8826 5.4568 0.0003 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8465 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 5.0740 0.3394 -1.2481 34 1 3.5440 -0.5707 -1.2483 35 1 3.6661 0.9658 -2.1385 36 1 3.6645 0.9667 2.1399 37 1 3.5431 -0.5701 1.2502 38 1 5.0730 0.3391 1.2504 39 1 3.8360 3.1238 0.8895 40 1 3.8365 3.1226 -0.8904 41 1 6.0354 1.5909 0.0008 42 1 8.2179 5.4450 -0.0003 43 1 10.3497 2.2626 0.0048 44 1 12.9000 2.8787 -0.0062 45 1 14.2717 5.0130 -0.0870 46 1 13.5056 6.2548 0.9324 47 1 15.5288 6.8336 0.2014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341034572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:46 Heat of formation + Delta-G solvation = -61.677761 kcal Electronic energy + Delta-G solvation = -28412.222098 eV Core-core repulsion = 24210.356426 eV Total energy + Delta-G solvation = -4201.865672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.53197 -41.64510 -40.13929 -39.35065 -37.55247 -36.59774 -35.64383 -34.31752 -32.76456 -31.09716 -28.88193 -28.33608 -28.19505 -28.06313 -26.59476 -25.50170 -24.56369 -22.71825 -21.97834 -21.17918 -20.39061 -19.44066 -19.21702 -18.32700 -17.83183 -17.41801 -17.33957 -16.83924 -16.76140 -16.41493 -16.14605 -15.92034 -15.71605 -15.57966 -15.28839 -15.05476 -14.76890 -14.35351 -14.19034 -14.12977 -13.97073 -13.79598 -13.65678 -13.26681 -12.78987 -12.76898 -12.70711 -12.61600 -12.44185 -12.16017 -11.95692 -11.88912 -11.87821 -11.68447 -11.56142 -11.03470 -10.85298 -10.69667 -10.56816 -10.39146 -9.92257 -9.30761 -8.78749 -6.56323 0.00403 0.79044 1.04948 1.51346 1.57473 1.68245 1.72272 1.79963 2.20508 2.44751 2.50260 2.87473 3.01021 3.22563 3.66050 3.71583 3.80366 3.89689 4.09654 4.26299 4.40132 4.46235 4.50639 4.58064 4.59008 4.61211 4.64761 4.73943 4.76566 4.76581 4.83267 4.90009 4.90229 4.93551 5.01425 5.09188 5.10595 5.38954 5.40635 5.52664 5.69013 5.75768 5.89520 6.09831 6.24621 6.24863 6.40250 6.50523 6.74040 6.86471 7.18904 8.58452 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030154 B = 0.001729 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.332175 B =16186.965683 C =16651.003854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.072 3.928 4 C -0.068 4.068 5 C -0.141 4.141 6 C -0.141 4.141 7 C 0.127 3.873 8 N -0.678 5.678 9 C 0.525 3.475 10 O -0.534 6.534 11 C 0.517 3.483 12 O -0.507 6.507 13 N -0.601 5.601 14 C 0.261 3.739 15 C -0.285 4.285 16 C 0.060 3.940 17 N -0.339 5.339 18 C 0.258 3.742 19 C -0.624 4.624 20 H 0.045 0.955 21 C -0.017 4.017 22 N -0.922 5.922 23 Si 1.119 2.881 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.277 1.277 27 N -0.341 5.341 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.420 0.580 42 H 0.428 0.572 43 H 0.179 0.821 44 H 0.207 0.793 45 H 0.058 0.942 46 H 0.018 0.982 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.960 -16.992 1.630 33.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.005 4.005 4 C -0.069 4.069 5 C -0.198 4.198 6 C -0.198 4.198 7 C 0.004 3.996 8 N -0.332 5.332 9 C 0.304 3.696 10 O -0.411 6.411 11 C 0.298 3.702 12 O -0.380 6.380 13 N -0.250 5.250 14 C 0.007 3.993 15 C -0.315 4.315 16 C -0.089 4.089 17 N -0.121 5.121 18 C 0.139 3.861 19 C -0.662 4.662 20 H 0.063 0.937 21 C -0.217 4.217 22 N -0.558 5.558 23 Si 0.940 3.060 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.203 1.203 27 N -0.172 5.172 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.260 0.740 42 H 0.267 0.733 43 H 0.196 0.804 44 H 0.224 0.776 45 H 0.076 0.924 46 H 0.036 0.964 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -27.767 -14.709 0.902 31.435 hybrid contribution -0.904 -1.561 0.993 2.059 sum -28.671 -16.269 1.895 33.020 Atomic orbital electron populations 1.22889 0.79745 1.03624 1.00728 1.87824 1.20937 1.27988 1.95567 1.22444 0.91648 0.84892 1.01476 1.20722 0.94315 0.93897 0.97922 1.21838 1.01128 1.00901 0.95972 1.21831 1.01140 1.00888 0.95937 1.21575 0.77043 0.97146 1.03817 1.45660 1.07508 1.08788 1.71239 1.19360 0.86224 0.85414 0.78563 1.90805 1.74212 1.26973 1.49108 1.20373 0.88632 0.83718 0.77461 1.90689 1.74254 1.26322 1.46699 1.42119 1.01488 1.11395 1.70016 1.19337 0.84465 0.93343 1.02191 1.21778 0.90978 0.99277 1.19508 1.23263 0.99900 0.85410 1.00281 1.48634 1.04464 1.05104 1.53873 1.19469 0.77552 0.91664 0.97423 1.22301 1.06688 1.24198 1.13035 0.93674 1.27227 0.91246 0.99411 1.03800 1.70948 1.31720 1.37709 1.15441 0.82891 0.76648 0.74306 0.72200 1.19940 1.19585 1.20287 1.77341 0.88713 1.21533 1.29652 0.93334 0.93354 0.88837 0.92009 0.92053 0.92424 0.91541 0.92195 0.92128 0.91556 0.92408 0.89891 0.89976 0.74031 0.73317 0.80387 0.77591 0.92381 0.96427 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.43 16 2 O -0.40 -4.80 9.35 -148.98 -1.39 -6.20 16 3 C 0.07 0.67 4.81 71.98 0.35 1.01 16 4 C -0.07 -0.69 0.61 -52.18 -0.03 -0.72 16 5 C -0.14 -1.52 8.15 71.98 0.59 -0.94 16 6 C -0.14 -1.49 8.16 71.98 0.59 -0.90 16 7 C 0.13 1.54 4.56 86.38 0.39 1.93 16 8 N -0.68 -10.80 4.95 -464.54 -2.30 -13.10 16 9 C 0.53 11.89 7.89 87.23 0.69 12.58 16 10 O -0.53 -14.27 16.48 -3.28 -0.05 -14.32 16 11 C 0.52 14.19 7.85 87.24 0.69 14.88 16 12 O -0.51 -14.73 13.60 -3.37 -0.05 -14.78 16 13 N -0.60 -19.16 5.43 -308.90 -1.68 -20.83 16 14 C 0.26 10.29 8.10 133.40 1.08 11.38 16 15 C -0.28 -10.40 9.60 22.11 0.21 -10.19 16 16 C 0.06 2.23 11.43 83.51 0.95 3.18 16 17 N -0.34 -15.63 3.67 -351.84 -1.29 -16.92 16 18 C 0.26 13.11 5.57 85.64 0.48 13.58 16 19 C -0.62 -35.43 9.24 25.60 0.24 -35.19 16 20 H 0.04 2.69 7.81 -2.91 -0.02 2.66 16 21 C -0.02 -0.94 5.46 84.65 0.46 -0.48 16 22 N -0.92 -53.64 13.65 21.45 0.29 -53.35 16 23 Si 1.12 49.80 29.90 68.60 2.05 51.85 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 27 N -0.34 -15.98 12.42 -54.54 -0.68 -16.66 16 28 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.63 6.86 -2.39 -0.02 0.61 16 34 H 0.07 0.79 7.68 -2.38 -0.02 0.78 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.78 7.68 -2.39 -0.02 0.76 16 38 H 0.06 0.61 6.86 -2.39 -0.02 0.60 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.42 5.94 5.63 -92.71 -0.52 5.42 16 42 H 0.43 12.72 8.29 -92.71 -0.77 11.95 16 43 H 0.18 5.90 5.91 -2.91 -0.02 5.88 16 44 H 0.21 5.85 8.06 -2.91 -0.02 5.83 16 45 H 0.06 2.79 7.94 -2.39 -0.02 2.77 16 46 H 0.02 0.95 8.00 -2.39 -0.02 0.94 16 47 H 0.26 14.99 7.22 -92.71 -0.67 14.32 16 Total: -1.00 -70.85 394.46 2.65 -68.21 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -0.19 Total: 24.54 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 7.93 Total: 11.56 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -5.65 Total: -120.86 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.49 Total: -35.30 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.85 kcal Total: -70.85 2.65 -68.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341034572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.531 kcal (2) G-P(sol) polarization free energy of solvation -70.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds