Wall clock time and date at job start Tue Mar 31 2020 20:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46667 * 2 1 4 4 C 1.53004 * 109.46972 * 240.00067 * 2 1 3 5 5 C 1.50702 * 109.47032 * 119.99979 * 2 1 3 6 6 N 1.29946 * 126.28301 * 239.97184 * 5 2 1 7 7 O 1.21309 * 110.24521 * 179.73128 * 6 5 2 8 8 C 1.33639 * 109.80928 * 0.46841 * 7 6 5 9 9 C 1.50706 * 126.55037 * 179.79972 * 8 7 6 10 10 C 1.52997 * 109.47238 * 269.69219 * 9 8 7 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46946 * 179.97438 * 11 10 9 13 13 O 1.21282 * 120.00082 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99978 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00217 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47293 * 179.97438 * 15 14 12 17 17 O 1.21289 * 120.00503 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00208 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00472 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99570 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00210 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00083 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99729 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47483 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47055 * 120.00246 * 23 21 19 26 26 H 1.48497 * 109.46761 * 240.00057 * 23 21 19 27 27 N 1.31128 * 106.90120 * 359.54177 * 8 7 6 28 28 H 1.09003 * 109.46849 * 299.99945 * 1 2 3 29 29 H 1.08995 * 109.47203 * 60.00024 * 1 2 3 30 30 H 1.09006 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46546 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47289 * 299.99923 * 3 2 1 33 33 H 1.08994 * 109.47306 * 60.00226 * 3 2 1 34 34 H 1.08998 * 109.47194 * 300.00201 * 4 2 1 35 35 H 1.09007 * 109.46808 * 59.99746 * 4 2 1 36 36 H 1.09000 * 109.46749 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.46953 * 29.68831 * 9 8 7 38 38 H 1.09000 * 109.47318 * 149.68429 * 9 8 7 39 39 H 1.09001 * 109.46832 * 299.99686 * 10 9 8 40 40 H 1.09004 * 109.47261 * 59.99705 * 10 9 8 41 41 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 42 42 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 43 43 H 0.97002 * 119.99767 * 359.97438 * 14 12 11 44 44 H 1.09001 * 109.47271 * 300.00040 * 15 14 12 45 45 H 1.09004 * 109.47041 * 59.99639 * 15 14 12 46 46 H 0.97006 * 119.99798 * 359.97438 * 18 16 15 47 47 H 0.96999 * 120.00175 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2305 6 7 2.7829 -0.2002 2.1605 7 8 3.0090 -1.0274 3.0184 8 6 2.4143 -2.1817 2.7025 9 6 2.4523 -3.4591 3.5014 10 6 3.6426 -4.3077 3.0501 11 6 3.6815 -5.6041 3.8616 12 6 4.8537 -6.4403 3.4166 13 8 5.5855 -6.0390 2.5367 14 7 5.0880 -7.6345 3.9958 15 6 6.2278 -8.4471 3.5636 16 6 6.2660 -9.7241 4.3628 17 8 5.4238 -9.9350 5.2098 18 7 7.2355 -10.6325 4.1358 19 6 7.2701 -11.7945 4.8625 20 1 6.5201 -11.9821 5.6166 21 6 8.2693 -12.7311 4.6281 22 7 9.1815 -12.5030 3.7101 23 14 8.3158 -14.3147 5.6178 24 1 7.1855 -14.3301 6.5807 25 1 8.1991 -15.4759 4.6996 26 1 9.5997 -14.3972 6.3595 27 7 1.7867 -1.9891 1.5674 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 2.5556 -3.2223 4.5604 38 1 1.5284 -4.0150 3.3420 39 1 3.5393 -4.5444 1.9911 40 1 4.5666 -3.7517 3.2096 41 1 3.7851 -5.3671 4.9204 42 1 2.7577 -6.1603 3.7024 43 1 4.5024 -7.9556 4.6993 44 1 6.1245 -8.6838 2.5046 45 1 7.1517 -7.8912 3.7232 46 1 7.9085 -10.4644 3.4577 47 1 9.8793 -13.1567 3.5467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343536269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:30 Heat of formation + Delta-G solvation = -36.342968 kcal Electronic energy + Delta-G solvation = -27692.203386 eV Core-core repulsion = 23491.436313 eV Total energy + Delta-G solvation = -4200.767073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.84439 -39.70032 -38.19967 -38.07580 -36.10465 -34.67445 -34.43390 -33.69702 -32.17296 -31.40859 -29.22567 -27.81528 -27.74459 -27.11056 -24.83918 -24.62901 -23.35186 -22.05987 -20.17555 -19.89537 -19.57011 -18.29610 -18.14145 -17.64375 -17.09849 -16.13461 -15.83842 -15.61563 -15.39720 -15.14285 -14.83117 -14.64077 -14.47431 -14.27369 -13.93705 -13.84316 -13.48203 -13.00015 -12.93017 -12.74696 -12.64263 -12.32064 -12.23640 -12.14200 -11.98010 -11.91001 -11.82733 -11.82192 -11.65695 -11.57620 -11.28180 -11.16487 -11.12560 -11.04856 -10.43058 -10.35112 -10.14427 -9.77161 -9.67512 -8.84037 -8.66707 -8.13086 -6.54213 -3.96357 0.88675 1.96256 2.52217 2.77600 3.08385 3.18796 3.21074 3.26578 3.37060 3.67435 3.70879 4.09045 4.29646 4.41889 4.51753 4.53522 4.60486 4.70030 4.84920 4.89888 5.06549 5.14103 5.15010 5.16314 5.18053 5.21325 5.30985 5.32960 5.39573 5.40866 5.44159 5.53202 5.62312 5.74469 5.80600 5.84357 5.86220 5.88644 5.93165 5.97342 6.04175 6.63774 7.43619 7.75982 7.89375 7.92319 8.38992 8.43295 9.01888 9.36367 9.83919 10.62668 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034440 B = 0.001430 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.808565 B =19570.690285 C =19868.526748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.023 3.977 3 C -0.140 4.140 4 C -0.139 4.139 5 C 0.180 3.820 6 N -0.384 5.384 7 O 0.075 5.925 8 C 0.188 3.812 9 C -0.029 4.029 10 C -0.101 4.101 11 C -0.138 4.138 12 C 0.510 3.490 13 O -0.551 6.551 14 N -0.708 5.708 15 C 0.108 3.892 16 C 0.427 3.573 17 O -0.598 6.598 18 N -0.549 5.549 19 C -0.306 4.306 20 H 0.106 0.894 21 C 0.026 3.974 22 N -0.894 5.894 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.477 5.477 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.411 0.589 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.396 0.604 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.479 23.677 -5.396 28.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.022 3.978 3 C -0.197 4.197 4 C -0.197 4.197 5 C -0.093 4.093 6 N -0.091 5.091 7 O 0.017 5.983 8 C -0.033 4.033 9 C -0.068 4.068 10 C -0.140 4.140 11 C -0.178 4.178 12 C 0.295 3.705 13 O -0.429 6.429 14 N -0.362 5.362 15 C -0.020 4.020 16 C 0.213 3.787 17 O -0.485 6.485 18 N -0.183 5.183 19 C -0.435 4.435 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.534 5.534 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.210 5.210 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.249 0.751 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.230 0.770 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.292 24.390 -5.870 29.380 hybrid contribution 0.420 -1.067 0.515 1.258 sum -14.872 23.323 -5.355 28.175 Atomic orbital electron populations 1.21854 0.92156 1.03173 1.02362 1.19003 0.96417 0.94409 0.88008 1.21838 1.01846 0.93483 1.02576 1.21867 1.01404 1.01116 0.95309 1.25762 0.96351 0.88635 0.98576 1.74633 1.18843 1.14412 1.01223 1.85302 1.56143 1.17641 1.39190 1.28820 0.90490 0.91558 0.92428 1.20337 1.02334 0.85846 0.98280 1.21322 0.97048 0.94302 1.01345 1.21586 0.98131 0.96005 1.02042 1.20525 0.86363 0.81448 0.82118 1.90706 1.49294 1.71629 1.31279 1.45740 1.30770 1.18889 1.40754 1.20951 0.89990 0.91832 0.99193 1.19750 0.85224 0.86048 0.87685 1.90492 1.41254 1.79062 1.37663 1.41813 1.25152 1.16741 1.34643 1.19786 1.12383 0.94043 1.17299 0.87592 1.25332 0.95349 0.99947 0.97072 1.69620 1.14994 1.36828 1.31963 0.85753 0.78397 0.80618 0.79294 1.19114 1.20608 1.20602 1.71839 1.23084 1.14759 1.11365 0.92557 0.91151 0.91337 0.91945 0.91230 0.92036 0.91277 0.91156 0.92384 0.87685 0.86940 0.90043 0.90230 0.88235 0.88255 0.75059 0.89885 0.89890 0.77038 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.46 37.16 0.31 -0.60 16 2 C 0.02 0.19 0.99 -155.65 -0.15 0.03 16 3 C -0.14 -0.99 7.97 37.16 0.30 -0.69 16 4 C -0.14 -1.02 8.46 37.16 0.31 -0.71 16 5 C 0.18 1.93 6.40 -156.37 -1.00 0.93 16 6 N -0.38 -4.49 11.47 30.90 0.35 -4.13 16 7 O 0.08 0.81 11.31 18.11 0.20 1.02 16 8 C 0.19 1.77 7.77 -13.05 -0.10 1.67 16 9 C -0.03 -0.18 5.84 -27.88 -0.16 -0.34 16 10 C -0.10 -0.85 4.49 -26.73 -0.12 -0.97 16 11 C -0.14 -1.15 5.70 -27.88 -0.16 -1.31 16 12 C 0.51 7.05 7.83 -10.98 -0.09 6.96 16 13 O -0.55 -9.62 15.98 5.56 0.09 -9.53 16 14 N -0.71 -10.79 5.53 -61.47 -0.34 -11.13 16 15 C 0.11 1.92 6.15 -5.20 -0.03 1.89 16 16 C 0.43 9.54 7.85 -10.99 -0.09 9.45 16 17 O -0.60 -14.85 15.24 5.55 0.08 -14.77 16 18 N -0.55 -13.38 5.29 -10.97 -0.06 -13.44 16 19 C -0.31 -8.19 9.68 -14.93 -0.14 -8.34 16 20 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 22 N -0.89 -23.62 13.05 55.50 0.72 -22.90 16 23 Si 0.93 20.26 29.55 -169.99 -5.02 15.23 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 N -0.48 -5.20 11.55 -9.87 -0.11 -5.32 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.41 6.03 7.44 -40.82 -0.30 5.72 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 46 H 0.40 9.30 7.90 -40.82 -0.32 8.98 16 47 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 402.52 15.07 6.07 6.07 Total: -1.00 -33.23 402.52 -6.55 -39.79 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -7.32 Total: 10.55 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -1.22 Total: 8.55 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.57 Total: -56.92 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.38 Total: -23.28 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.23 -6.55 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343536269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.443 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds