Wall clock time and date at job start Tue Mar 31 2020 20:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46667 * 2 1 4 4 C 1.53004 * 109.46972 * 240.00067 * 2 1 3 5 5 C 1.50702 * 109.47032 * 119.99979 * 2 1 3 6 6 N 1.29946 * 126.28301 * 239.97184 * 5 2 1 7 7 O 1.21309 * 110.24521 * 179.73128 * 6 5 2 8 8 C 1.33639 * 109.80928 * 0.46841 * 7 6 5 9 9 C 1.50706 * 126.55037 * 179.79972 * 8 7 6 10 10 C 1.52997 * 109.47238 * 269.69219 * 9 8 7 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46946 * 179.97438 * 11 10 9 13 13 O 1.21282 * 120.00082 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99978 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00217 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47293 * 179.97438 * 15 14 12 17 17 O 1.21289 * 120.00503 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00208 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00472 * 180.02562 * 18 16 15 20 20 H 1.07995 * 119.99570 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00210 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00083 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99729 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47483 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47055 * 120.00246 * 23 21 19 26 26 H 1.48497 * 109.46761 * 240.00057 * 23 21 19 27 27 N 1.31128 * 106.90120 * 359.54177 * 8 7 6 28 28 H 1.09003 * 109.46849 * 299.99945 * 1 2 3 29 29 H 1.08995 * 109.47203 * 60.00024 * 1 2 3 30 30 H 1.09006 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46546 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47289 * 299.99923 * 3 2 1 33 33 H 1.08994 * 109.47306 * 60.00226 * 3 2 1 34 34 H 1.08998 * 109.47194 * 300.00201 * 4 2 1 35 35 H 1.09007 * 109.46808 * 59.99746 * 4 2 1 36 36 H 1.09000 * 109.46749 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.46953 * 29.68831 * 9 8 7 38 38 H 1.09000 * 109.47318 * 149.68429 * 9 8 7 39 39 H 1.09001 * 109.46832 * 299.99686 * 10 9 8 40 40 H 1.09004 * 109.47261 * 59.99705 * 10 9 8 41 41 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 42 42 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 43 43 H 0.97002 * 119.99767 * 359.97438 * 14 12 11 44 44 H 1.09001 * 109.47271 * 300.00040 * 15 14 12 45 45 H 1.09004 * 109.47041 * 59.99639 * 15 14 12 46 46 H 0.97006 * 119.99798 * 359.97438 * 18 16 15 47 47 H 0.96999 * 120.00175 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2305 6 7 2.7829 -0.2002 2.1605 7 8 3.0090 -1.0274 3.0184 8 6 2.4143 -2.1817 2.7025 9 6 2.4523 -3.4591 3.5014 10 6 3.6426 -4.3077 3.0501 11 6 3.6815 -5.6041 3.8616 12 6 4.8537 -6.4403 3.4166 13 8 5.5855 -6.0390 2.5367 14 7 5.0880 -7.6345 3.9958 15 6 6.2278 -8.4471 3.5636 16 6 6.2660 -9.7241 4.3628 17 8 5.4238 -9.9350 5.2098 18 7 7.2355 -10.6325 4.1358 19 6 7.2701 -11.7945 4.8625 20 1 6.5201 -11.9821 5.6166 21 6 8.2693 -12.7311 4.6281 22 7 9.1815 -12.5030 3.7101 23 14 8.3158 -14.3147 5.6178 24 1 7.1855 -14.3301 6.5807 25 1 8.1991 -15.4759 4.6996 26 1 9.5997 -14.3972 6.3595 27 7 1.7867 -1.9891 1.5674 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7208 -1.2495 37 1 2.5556 -3.2223 4.5604 38 1 1.5284 -4.0150 3.3420 39 1 3.5393 -4.5444 1.9911 40 1 4.5666 -3.7517 3.2096 41 1 3.7851 -5.3671 4.9204 42 1 2.7577 -6.1603 3.7024 43 1 4.5024 -7.9556 4.6993 44 1 6.1245 -8.6838 2.5046 45 1 7.1517 -7.8912 3.7232 46 1 7.9085 -10.4644 3.4577 47 1 9.8793 -13.1567 3.5467 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343536269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:29 Heat of formation + Delta-G solvation = -61.253646 kcal Electronic energy + Delta-G solvation = -27693.283594 eV Core-core repulsion = 23491.436313 eV Total energy + Delta-G solvation = -4201.847281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.62409 -40.98362 -39.89720 -38.71704 -36.83528 -36.22733 -35.37480 -35.20211 -33.37566 -32.95204 -30.23630 -28.70666 -28.29178 -28.07854 -26.38235 -25.58471 -24.22980 -22.79280 -21.36305 -21.21956 -20.55169 -20.04805 -19.09098 -18.61591 -18.18384 -17.27018 -17.05593 -16.90719 -16.45823 -16.27743 -16.18103 -15.83440 -15.49111 -15.22330 -15.06332 -14.91501 -14.63297 -13.91707 -13.89330 -13.60917 -13.53973 -13.49905 -13.41171 -13.16832 -12.92280 -12.75057 -12.72755 -12.64489 -12.53202 -12.47186 -12.43847 -12.25099 -12.10357 -11.92089 -11.80693 -11.68852 -11.57205 -10.99836 -10.86532 -10.54350 -10.16061 -10.06427 -8.50801 -6.00997 0.13649 1.19699 1.35757 1.43810 1.57751 1.68286 1.83700 1.92208 2.12877 2.34761 2.57587 2.99182 3.15532 3.16672 3.67553 3.73132 3.84149 3.93512 3.98532 4.07900 4.17890 4.23131 4.39852 4.43694 4.49422 4.58537 4.62596 4.64885 4.67226 4.73099 4.74816 4.83710 4.86680 4.88170 4.88620 5.00325 5.13120 5.21607 5.24949 5.27167 5.29852 5.36668 5.40380 5.92625 6.47147 6.61133 7.04128 7.16270 7.25885 7.45656 7.94862 8.66317 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.034440 B = 0.001430 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.808565 B =19570.690285 C =19868.526748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.017 3.983 3 C -0.135 4.135 4 C -0.135 4.135 5 C 0.173 3.827 6 N -0.407 5.407 7 O 0.065 5.935 8 C 0.190 3.810 9 C -0.021 4.021 10 C -0.095 4.095 11 C -0.126 4.126 12 C 0.507 3.493 13 O -0.591 6.591 14 N -0.709 5.709 15 C 0.120 3.880 16 C 0.433 3.567 17 O -0.622 6.622 18 N -0.561 5.561 19 C -0.337 4.337 20 H 0.088 0.912 21 C -0.011 4.011 22 N -0.917 5.917 23 Si 0.997 3.003 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.272 1.272 27 N -0.499 5.499 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.416 0.584 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.398 0.602 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.876 24.015 -4.997 29.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.015 3.985 3 C -0.192 4.192 4 C -0.193 4.193 5 C -0.100 4.100 6 N -0.117 5.117 7 O 0.009 5.991 8 C -0.030 4.030 9 C -0.059 4.059 10 C -0.134 4.134 11 C -0.165 4.165 12 C 0.296 3.704 13 O -0.472 6.472 14 N -0.363 5.363 15 C -0.008 4.008 16 C 0.220 3.780 17 O -0.510 6.510 18 N -0.197 5.197 19 C -0.466 4.466 20 H 0.106 0.894 21 C -0.212 4.212 22 N -0.557 5.557 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.197 1.197 26 H -0.197 1.197 27 N -0.232 5.232 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.255 0.745 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.232 0.768 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.699 24.738 -5.463 30.342 hybrid contribution 0.841 -1.128 0.364 1.453 sum -15.858 23.610 -5.099 28.895 Atomic orbital electron populations 1.21821 0.90928 1.02897 1.03296 1.19238 0.97384 0.94692 0.87179 1.21809 1.00974 0.93043 1.03414 1.21844 1.00558 1.00795 0.96068 1.26332 0.95786 0.88805 0.99084 1.74618 1.19907 1.15277 1.01930 1.85263 1.56510 1.18097 1.39222 1.29515 0.89254 0.92012 0.92190 1.20519 1.02012 0.83962 0.99451 1.21192 0.97445 0.94635 1.00122 1.21649 0.96485 0.94848 1.03551 1.21515 0.87107 0.80841 0.80982 1.90696 1.51092 1.72301 1.33080 1.45794 1.30110 1.19253 1.41166 1.20731 0.91648 0.89884 0.98580 1.20455 0.83802 0.86708 0.87007 1.90467 1.41898 1.79903 1.38721 1.41878 1.25983 1.16882 1.34947 1.19793 1.12962 0.95709 1.18152 0.89434 1.26130 0.94586 1.02605 0.97830 1.69686 1.15351 1.37923 1.32778 0.84805 0.78415 0.76812 0.77916 1.19280 1.19749 1.19734 1.71856 1.24133 1.15022 1.12194 0.92962 0.88845 0.92179 0.93253 0.88823 0.92705 0.92326 0.88709 0.93650 0.84400 0.84787 0.92437 0.91886 0.84927 0.85333 0.74494 0.89248 0.89196 0.76812 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.46 71.98 0.61 -0.98 16 2 C 0.02 0.26 0.99 -52.92 -0.05 0.21 16 3 C -0.13 -1.80 7.97 71.98 0.57 -1.23 16 4 C -0.13 -1.90 8.46 71.98 0.61 -1.29 16 5 C 0.17 3.72 6.40 138.46 0.89 4.61 16 6 N -0.41 -9.66 11.47 -60.32 -0.69 -10.35 16 7 O 0.06 1.39 11.31 74.86 0.85 2.23 16 8 C 0.19 3.42 7.77 88.38 0.69 4.11 16 9 C -0.02 -0.20 5.84 29.85 0.17 -0.02 16 10 C -0.09 -1.44 4.49 30.59 0.14 -1.30 16 11 C -0.13 -1.72 5.70 29.85 0.17 -1.55 16 12 C 0.51 13.26 7.83 87.66 0.69 13.95 16 13 O -0.59 -20.43 15.98 -3.04 -0.05 -20.48 16 14 N -0.71 -20.66 5.53 -466.79 -2.58 -23.24 16 15 C 0.12 4.19 6.15 85.63 0.53 4.72 16 16 C 0.43 19.38 7.85 87.66 0.69 20.07 16 17 O -0.62 -30.90 15.24 -3.06 -0.05 -30.95 16 18 N -0.56 -27.76 5.29 -306.99 -1.62 -29.38 16 19 C -0.34 -18.31 9.68 84.04 0.81 -17.49 16 20 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 21 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 22 N -0.92 -48.41 13.05 21.66 0.28 -48.13 16 23 Si 1.00 41.24 29.55 68.60 2.03 43.26 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 27 N -0.50 -10.70 11.55 -303.20 -3.50 -14.21 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 40 H 0.06 1.17 8.10 -2.38 -0.02 1.15 16 41 H 0.13 1.04 8.14 -2.39 -0.02 1.03 16 42 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.42 11.48 7.44 -92.71 -0.69 10.79 16 44 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 46 H 0.40 19.03 7.90 -92.70 -0.73 18.29 16 47 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -73.82 402.52 1.22 -72.61 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.42 Total: 34.93 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 6.98 Total: 23.69 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -8.11 Total: -125.30 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: 0.75 Total: -49.19 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -73.82 1.22 -72.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343536269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.352 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds