Wall clock time and date at job start Tue Mar 31 2020 20:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47013 * 2 1 4 4 C 1.52998 * 109.47365 * 175.23861 * 3 2 1 5 5 C 1.52999 * 109.47037 * 294.41327 * 4 3 2 6 6 C 1.50706 * 109.46965 * 295.23700 * 3 2 1 7 7 C 1.41377 * 126.80314 * 274.99978 * 6 3 2 8 8 C 1.35450 * 103.98525 * 179.97438 * 7 6 3 9 9 C 1.50698 * 126.77391 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47265 * 90.00466 * 9 8 7 11 11 C 1.34777 * 120.00277 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99626 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00033 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00100 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47468 * 180.02562 * 14 13 11 16 16 O 1.21293 * 119.99988 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00090 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99948 * 179.97438 * 17 15 14 19 19 H 1.07996 * 119.99786 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99959 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00241 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00114 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47153 * 60.00055 * 22 20 18 24 24 H 1.48495 * 109.47403 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47061 * 300.00248 * 22 20 18 26 26 O 1.34043 * 106.44780 * 0.02562 * 8 7 6 27 27 N 1.20921 * 111.56416 * 359.70761 * 26 8 7 28 28 H 1.09000 * 109.47012 * 186.91346 * 1 2 3 29 29 H 1.08992 * 109.47278 * 306.91663 * 1 2 3 30 30 H 1.09000 * 109.46646 * 66.92059 * 1 2 3 31 31 H 1.08994 * 109.47610 * 239.99703 * 2 1 3 32 32 H 1.09002 * 109.47200 * 119.99272 * 2 1 3 33 33 H 1.08994 * 109.47099 * 55.23520 * 3 2 1 34 34 H 1.09002 * 109.46845 * 54.41137 * 4 3 2 35 35 H 1.08996 * 109.47220 * 174.41435 * 4 3 2 36 36 H 1.09000 * 109.47310 * 66.03642 * 5 4 3 37 37 H 1.08996 * 109.47245 * 186.04341 * 5 4 3 38 38 H 1.08999 * 109.46972 * 306.03891 * 5 4 3 39 39 H 1.07998 * 128.00663 * 0.03732 * 7 6 3 40 40 H 1.09008 * 109.46976 * 210.00196 * 9 8 7 41 41 H 1.08999 * 109.47239 * 329.99768 * 9 8 7 42 42 H 0.96998 * 119.99902 * 359.97438 * 10 9 8 43 43 H 0.97000 * 120.00374 * 0.02562 * 13 11 10 44 44 H 1.09000 * 109.47319 * 300.00622 * 14 13 11 45 45 H 1.09007 * 109.46789 * 60.00106 * 14 13 11 46 46 H 0.96998 * 119.99994 * 0.02562 * 17 15 14 47 47 H 0.96996 * 120.00501 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4443 0.1197 5 6 3.9703 0.8852 1.4851 6 6 1.6362 2.1180 -1.2853 7 6 2.3269 2.0746 -2.5181 8 6 1.5663 2.8301 -3.3461 9 6 1.8365 3.1278 -4.7985 10 7 1.2054 2.1023 -5.6328 11 6 1.3153 2.1637 -6.9747 12 8 1.9378 3.0706 -7.4928 13 7 0.7351 1.2200 -7.7423 14 6 0.8540 1.2871 -9.2009 15 6 0.1214 0.1240 -9.8187 16 8 -0.4440 -0.6820 -9.1103 17 7 0.0954 -0.0211 -11.1583 18 6 -0.5706 -1.0795 -11.7204 19 1 -1.0747 -1.7966 -11.0896 20 6 -0.5979 -1.2289 -13.1015 21 7 0.0151 -0.3560 -13.8691 22 14 -1.5060 -2.6705 -13.8673 23 1 -2.9396 -2.6123 -13.4845 24 1 -1.3849 -2.6028 -15.3458 25 1 -0.9149 -3.9429 -13.3805 26 8 0.5266 3.2615 -2.6184 27 7 0.5797 2.8527 -1.4816 28 1 -0.3633 -1.0202 0.1237 29 1 -0.3633 0.6172 0.8216 30 1 -0.3632 0.4029 -0.9454 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 1.6086 1.9804 0.8442 34 1 3.9922 0.8237 -0.6681 35 1 3.9364 2.4643 0.0202 36 1 3.6937 -0.1675 1.5433 37 1 5.0480 0.9854 1.6136 38 1 3.4576 1.4395 2.2713 39 1 3.2471 1.5579 -2.7470 40 1 1.4259 4.1054 -5.0514 41 1 2.9121 3.1288 -4.9752 42 1 0.7091 1.3786 -5.2195 43 1 0.2381 0.4967 -7.3290 44 1 0.4198 2.2208 -9.5583 45 1 1.9064 1.2447 -9.4819 46 1 0.5486 0.6228 -11.7248 47 1 -0.0036 -0.4604 -14.8332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345078269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:34 Heat of formation + Delta-G solvation = -25.835989 kcal Electronic energy + Delta-G solvation = -28098.572516 eV Core-core repulsion = 23898.261060 eV Total energy + Delta-G solvation = -4200.311456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.27696 -39.92746 -38.24574 -37.95163 -35.55853 -34.42863 -33.69168 -33.48557 -32.33034 -31.87283 -31.36720 -28.17236 -27.47688 -26.23112 -24.33887 -23.84331 -23.26002 -21.42785 -20.87127 -20.14121 -19.61729 -18.65460 -18.07927 -17.88925 -17.34601 -16.28426 -15.77568 -15.72576 -15.50991 -15.16649 -14.80080 -14.63682 -14.51615 -14.41113 -14.25808 -13.95032 -13.91516 -13.56369 -13.42215 -12.99456 -12.64747 -12.50035 -12.19872 -12.17727 -11.96415 -11.80149 -11.69155 -11.63424 -11.37311 -11.13552 -11.10920 -11.02677 -10.51324 -10.37433 -10.31157 -10.23257 -9.76966 -9.63265 -9.34171 -8.69830 -8.63932 -8.10662 -6.51797 -3.94013 0.98570 1.86038 2.59255 2.93152 3.13288 3.21400 3.25325 3.29497 3.65243 3.74128 3.97837 4.08185 4.33539 4.39060 4.47080 4.62310 4.67010 4.79077 4.84678 4.88085 4.94555 4.99806 5.08604 5.16717 5.23732 5.30405 5.32671 5.32833 5.49595 5.50649 5.57081 5.65567 5.71916 5.76111 5.87021 5.88176 5.93395 5.98237 6.06371 6.23898 6.68561 6.94692 7.45355 7.91483 7.93733 8.11870 8.44388 8.67737 9.04013 9.38692 9.86582 10.64905 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018805 B = 0.001720 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.588520 B =16279.023991 C =17025.665827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.011 4.011 4 C -0.116 4.116 5 C -0.153 4.153 6 C 0.025 3.975 7 C -0.204 4.204 8 C -0.048 4.048 9 C 0.225 3.775 10 N -0.748 5.748 11 C 0.709 3.291 12 O -0.595 6.595 13 N -0.721 5.721 14 C 0.128 3.872 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.548 5.548 18 C -0.306 4.306 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.934 3.066 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 O 0.107 5.893 27 N -0.356 5.356 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.173 0.827 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.400 0.600 43 H 0.408 0.592 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.396 0.604 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.433 4.744 26.696 28.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.030 4.030 4 C -0.155 4.155 5 C -0.210 4.210 6 C -0.133 4.133 7 C -0.226 4.226 8 C -0.112 4.112 9 C 0.100 3.900 10 N -0.407 5.407 11 C 0.408 3.592 12 O -0.473 6.473 13 N -0.379 5.379 14 C 0.000 4.000 15 C 0.213 3.787 16 O -0.485 6.485 17 N -0.183 5.183 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.760 3.240 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 O 0.039 5.961 27 N -0.058 5.058 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.191 0.809 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.234 0.766 43 H 0.245 0.755 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.230 0.770 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.616 5.455 27.194 28.514 hybrid contribution 0.055 -1.275 -0.772 1.492 sum 6.672 4.180 26.421 27.569 Atomic orbital electron populations 1.21780 0.95395 1.01687 1.02167 1.21617 0.96408 0.94592 1.02840 1.19716 0.96258 0.95553 0.91449 1.21556 0.93457 1.01955 0.98482 1.21813 1.01414 1.01307 0.96516 1.23547 0.92409 0.99468 0.97923 1.22487 1.03832 1.04147 0.92111 1.24412 0.90044 1.00053 0.96649 1.19360 0.99426 0.92641 0.78619 1.44990 1.60007 1.30899 1.04759 1.15725 0.80121 0.82631 0.80674 1.90929 1.47293 1.36400 1.72700 1.44754 1.57369 1.29261 1.06474 1.20810 1.01332 0.98857 0.78993 1.19754 0.86867 0.88428 0.83626 1.90494 1.50678 1.46315 1.61025 1.41775 1.46587 1.25459 1.04472 1.19678 1.29551 1.03929 0.90386 0.87741 1.25320 0.97460 0.98742 0.96139 1.69605 1.42429 1.35688 1.05693 0.85872 0.79761 0.80734 0.77588 1.19794 1.20850 1.19805 1.84876 1.39898 1.55609 1.15706 1.73893 1.20402 1.14046 0.97450 0.92482 0.92617 0.92847 0.91445 0.90641 0.89452 0.91228 0.91536 0.92241 0.92352 0.92575 0.80936 0.89060 0.88056 0.76576 0.75485 0.89873 0.89881 0.76992 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.61 37.16 0.36 -0.79 16 2 C -0.12 -0.73 5.26 -26.73 -0.14 -0.87 16 3 C -0.01 -0.07 2.32 -91.77 -0.21 -0.28 16 4 C -0.12 -0.61 4.92 -26.73 -0.13 -0.74 16 5 C -0.15 -0.66 9.53 37.16 0.35 -0.31 16 6 C 0.03 0.22 5.35 -82.10 -0.44 -0.22 16 7 C -0.20 -1.60 10.32 -39.38 -0.41 -2.01 16 8 C -0.05 -0.42 6.86 -35.30 -0.24 -0.66 16 9 C 0.22 2.04 6.23 -5.20 -0.03 2.01 16 10 N -0.75 -8.20 5.55 -66.41 -0.37 -8.57 16 11 C 0.71 10.71 8.57 -86.92 -0.74 9.97 16 12 O -0.59 -10.81 16.34 5.28 0.09 -10.73 16 13 N -0.72 -11.60 5.53 -66.41 -0.37 -11.97 16 14 C 0.13 2.31 6.15 -5.19 -0.03 2.28 16 15 C 0.43 9.64 7.85 -10.99 -0.09 9.55 16 16 O -0.60 -15.08 15.24 5.55 0.08 -15.00 16 17 N -0.55 -13.41 5.29 -10.97 -0.06 -13.47 16 18 C -0.31 -8.24 9.68 -14.93 -0.14 -8.39 16 19 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 21 N -0.89 -23.65 13.05 55.50 0.72 -22.93 16 22 Si 0.93 20.40 29.55 -169.99 -5.02 15.37 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 26 O 0.11 1.14 11.20 17.17 0.19 1.33 16 27 N -0.36 -3.88 11.88 33.42 0.40 -3.49 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.49 7.44 -51.93 -0.39 0.11 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.38 6.51 -51.93 -0.34 0.04 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.34 7.80 -51.93 -0.41 -0.07 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.24 6.78 -51.93 -0.35 -0.11 16 37 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.17 1.01 7.84 -52.49 -0.41 0.60 16 40 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.40 3.77 8.48 -40.82 -0.35 3.42 16 43 H 0.41 6.42 7.45 -40.82 -0.30 6.11 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 47 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 398.32 15.07 6.00 6.00 Total: -1.00 -31.85 398.32 -7.35 -39.21 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -7.03 Total: 14.12 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -2.00 Total: 10.12 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.33 Total: -60.43 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: 0.36 Total: -24.39 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.85 -7.35 -39.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345078269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.370 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds