Wall clock time and date at job start Tue Mar 31 2020 20:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47013 * 2 1 4 4 C 1.52998 * 109.47365 * 175.23861 * 3 2 1 5 5 C 1.52999 * 109.47037 * 294.41327 * 4 3 2 6 6 C 1.50706 * 109.46965 * 295.23700 * 3 2 1 7 7 C 1.41377 * 126.80314 * 274.99978 * 6 3 2 8 8 C 1.35450 * 103.98525 * 179.97438 * 7 6 3 9 9 C 1.50698 * 126.77391 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47265 * 90.00466 * 9 8 7 11 11 C 1.34777 * 120.00277 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99626 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00033 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00100 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47468 * 180.02562 * 14 13 11 16 16 O 1.21293 * 119.99988 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00090 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99948 * 179.97438 * 17 15 14 19 19 H 1.07996 * 119.99786 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99959 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00241 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00114 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47153 * 60.00055 * 22 20 18 24 24 H 1.48495 * 109.47403 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47061 * 300.00248 * 22 20 18 26 26 O 1.34043 * 106.44780 * 0.02562 * 8 7 6 27 27 N 1.20921 * 111.56416 * 359.70761 * 26 8 7 28 28 H 1.09000 * 109.47012 * 186.91346 * 1 2 3 29 29 H 1.08992 * 109.47278 * 306.91663 * 1 2 3 30 30 H 1.09000 * 109.46646 * 66.92059 * 1 2 3 31 31 H 1.08994 * 109.47610 * 239.99703 * 2 1 3 32 32 H 1.09002 * 109.47200 * 119.99272 * 2 1 3 33 33 H 1.08994 * 109.47099 * 55.23520 * 3 2 1 34 34 H 1.09002 * 109.46845 * 54.41137 * 4 3 2 35 35 H 1.08996 * 109.47220 * 174.41435 * 4 3 2 36 36 H 1.09000 * 109.47310 * 66.03642 * 5 4 3 37 37 H 1.08996 * 109.47245 * 186.04341 * 5 4 3 38 38 H 1.08999 * 109.46972 * 306.03891 * 5 4 3 39 39 H 1.07998 * 128.00663 * 0.03732 * 7 6 3 40 40 H 1.09008 * 109.46976 * 210.00196 * 9 8 7 41 41 H 1.08999 * 109.47239 * 329.99768 * 9 8 7 42 42 H 0.96998 * 119.99902 * 359.97438 * 10 9 8 43 43 H 0.97000 * 120.00374 * 0.02562 * 13 11 10 44 44 H 1.09000 * 109.47319 * 300.00622 * 14 13 11 45 45 H 1.09007 * 109.46789 * 60.00106 * 14 13 11 46 46 H 0.96998 * 119.99994 * 0.02562 * 17 15 14 47 47 H 0.96996 * 120.00501 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4443 0.1197 5 6 3.9703 0.8852 1.4851 6 6 1.6362 2.1180 -1.2853 7 6 2.3269 2.0746 -2.5181 8 6 1.5663 2.8301 -3.3461 9 6 1.8365 3.1278 -4.7985 10 7 1.2054 2.1023 -5.6328 11 6 1.3153 2.1637 -6.9747 12 8 1.9378 3.0706 -7.4928 13 7 0.7351 1.2200 -7.7423 14 6 0.8540 1.2871 -9.2009 15 6 0.1214 0.1240 -9.8187 16 8 -0.4440 -0.6820 -9.1103 17 7 0.0954 -0.0211 -11.1583 18 6 -0.5706 -1.0795 -11.7204 19 1 -1.0747 -1.7966 -11.0896 20 6 -0.5979 -1.2289 -13.1015 21 7 0.0151 -0.3560 -13.8691 22 14 -1.5060 -2.6705 -13.8673 23 1 -2.9396 -2.6123 -13.4845 24 1 -1.3849 -2.6028 -15.3458 25 1 -0.9149 -3.9429 -13.3805 26 8 0.5266 3.2615 -2.6184 27 7 0.5797 2.8527 -1.4816 28 1 -0.3633 -1.0202 0.1237 29 1 -0.3633 0.6172 0.8216 30 1 -0.3632 0.4029 -0.9454 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 1.6086 1.9804 0.8442 34 1 3.9922 0.8237 -0.6681 35 1 3.9364 2.4643 0.0202 36 1 3.6937 -0.1675 1.5433 37 1 5.0480 0.9854 1.6136 38 1 3.4576 1.4395 2.2713 39 1 3.2471 1.5579 -2.7470 40 1 1.4259 4.1054 -5.0514 41 1 2.9121 3.1288 -4.9752 42 1 0.7091 1.3786 -5.2195 43 1 0.2381 0.4967 -7.3290 44 1 0.4198 2.2208 -9.5583 45 1 1.9064 1.2447 -9.4819 46 1 0.5486 0.6228 -11.7248 47 1 -0.0036 -0.4604 -14.8332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345078269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:33 Heat of formation + Delta-G solvation = -48.099637 kcal Electronic energy + Delta-G solvation = -28099.537940 eV Core-core repulsion = 23898.261060 eV Total energy + Delta-G solvation = -4201.276880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.99852 -41.20481 -40.00954 -38.48341 -36.58307 -36.14748 -35.25628 -34.14442 -33.36801 -32.96773 -32.52784 -29.50931 -28.05121 -27.39438 -26.04974 -24.50918 -23.76037 -22.09367 -21.98805 -21.34584 -20.77589 -20.11460 -19.68428 -18.66538 -18.27010 -17.40867 -17.29456 -16.94680 -16.47561 -16.35076 -15.91930 -15.87697 -15.60234 -15.43752 -15.12697 -15.06993 -14.86674 -14.61798 -14.37522 -13.92895 -13.74640 -13.52002 -13.42399 -13.25481 -12.93118 -12.88395 -12.69187 -12.45134 -12.37363 -12.27579 -12.12808 -11.91661 -11.60151 -11.56209 -11.54405 -11.52850 -10.90237 -10.56155 -10.52763 -10.47346 -10.08513 -9.87969 -8.48975 -5.99089 0.25235 1.18225 1.39502 1.43919 1.54183 1.66253 1.92362 2.05193 2.11597 2.30621 3.06116 3.07684 3.18370 3.31977 3.34425 3.80577 3.96435 4.01750 4.08190 4.19959 4.24886 4.34496 4.39902 4.47653 4.49545 4.51868 4.53864 4.63965 4.72024 4.74399 4.82557 4.98891 5.03696 5.07551 5.19240 5.21952 5.27246 5.28130 5.32170 5.39923 5.40460 5.48353 5.85873 5.94645 6.50471 6.95978 7.05655 7.23375 7.43290 7.50594 7.97312 8.67520 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018805 B = 0.001720 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.588520 B =16279.023991 C =17025.665827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.010 4.010 4 C -0.112 4.112 5 C -0.152 4.152 6 C 0.025 3.975 7 C -0.194 4.194 8 C -0.049 4.049 9 C 0.227 3.773 10 N -0.733 5.733 11 C 0.712 3.288 12 O -0.624 6.624 13 N -0.723 5.723 14 C 0.142 3.858 15 C 0.433 3.567 16 O -0.625 6.625 17 N -0.559 5.559 18 C -0.338 4.338 19 H 0.086 0.914 20 C -0.010 4.010 21 N -0.915 5.915 22 Si 0.996 3.004 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.270 1.270 26 O 0.088 5.912 27 N -0.383 5.383 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.197 0.803 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.409 0.591 43 H 0.410 0.590 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.399 0.601 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.404 4.133 27.484 29.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.029 4.029 4 C -0.150 4.150 5 C -0.210 4.210 6 C -0.134 4.134 7 C -0.216 4.216 8 C -0.113 4.113 9 C 0.103 3.897 10 N -0.390 5.390 11 C 0.411 3.589 12 O -0.505 6.505 13 N -0.381 5.381 14 C 0.014 3.986 15 C 0.220 3.780 16 O -0.514 6.514 17 N -0.194 5.194 18 C -0.467 4.467 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.555 5.555 22 Si 0.819 3.181 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.195 1.195 26 O 0.022 5.978 27 N -0.088 5.088 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.214 0.786 40 H 0.108 0.892 41 H 0.133 0.867 42 H 0.245 0.755 43 H 0.248 0.752 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.234 0.766 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.589 4.862 28.011 29.425 hybrid contribution -0.236 -1.056 -0.898 1.406 sum 7.353 3.805 27.113 28.349 Atomic orbital electron populations 1.21774 0.96513 1.01853 1.00853 1.21613 0.95322 0.94394 1.03720 1.19809 0.97379 0.95483 0.90226 1.21535 0.92071 1.02029 0.99373 1.21811 1.01760 1.01552 0.95839 1.23979 0.91764 0.98633 0.99003 1.22784 1.04163 1.03335 0.91306 1.24374 0.90014 1.00437 0.96436 1.19451 0.99987 0.91896 0.78385 1.44884 1.59361 1.31334 1.03454 1.15737 0.79641 0.81859 0.81615 1.90913 1.48602 1.37426 1.73578 1.44680 1.57862 1.29783 1.05747 1.20607 1.01221 0.96819 0.79997 1.20462 0.85765 0.88836 0.82952 1.90472 1.51637 1.47687 1.61556 1.41822 1.47038 1.25334 1.05253 1.19693 1.31100 1.04933 0.91016 0.89612 1.26102 0.97838 1.01064 0.96057 1.69669 1.42922 1.36817 1.06076 0.84942 0.78427 0.77599 0.77098 1.19616 1.19666 1.19518 1.84845 1.40734 1.56271 1.15905 1.73900 1.21720 1.15381 0.97782 0.91799 0.92869 0.94965 0.91333 0.88909 0.90054 0.90419 0.91902 0.91669 0.91809 0.92691 0.78611 0.89185 0.86671 0.75507 0.75249 0.88882 0.88649 0.76643 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.61 71.98 0.69 -1.51 16 2 C -0.11 -1.24 5.26 30.60 0.16 -1.08 16 3 C -0.01 -0.12 2.32 -11.54 -0.03 -0.14 16 4 C -0.11 -0.95 4.92 30.59 0.15 -0.80 16 5 C -0.15 -1.01 9.53 71.98 0.69 -0.32 16 6 C 0.02 0.41 5.35 43.58 0.23 0.64 16 7 C -0.19 -2.70 10.32 22.40 0.23 -2.47 16 8 C -0.05 -0.80 6.86 25.04 0.17 -0.63 16 9 C 0.23 3.79 6.23 85.63 0.53 4.32 16 10 N -0.73 -14.99 5.55 -482.29 -2.68 -17.67 16 11 C 0.71 20.56 8.57 179.06 1.53 22.09 16 12 O -0.62 -21.89 16.34 -4.01 -0.07 -21.96 16 13 N -0.72 -22.51 5.53 -482.29 -2.67 -25.18 16 14 C 0.14 4.99 6.15 85.63 0.53 5.52 16 15 C 0.43 19.51 7.85 87.66 0.69 20.20 16 16 O -0.63 -31.69 15.24 -3.07 -0.05 -31.74 16 17 N -0.56 -27.59 5.29 -306.99 -1.62 -29.22 16 18 C -0.34 -18.42 9.68 84.04 0.81 -17.61 16 19 H 0.09 4.91 7.16 -2.91 -0.02 4.89 16 20 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 21 N -0.91 -48.11 13.05 21.66 0.28 -47.82 16 22 Si 1.00 41.40 29.55 68.60 2.03 43.43 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 O 0.09 1.86 11.20 71.60 0.80 2.66 16 27 N -0.38 -8.31 11.88 -49.55 -0.59 -8.90 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.03 0.59 7.44 -2.39 -0.02 0.57 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.72 6.51 -2.39 -0.02 0.70 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 0.54 7.80 -2.39 -0.02 0.52 16 35 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.06 0.36 6.78 -2.39 -0.02 0.34 16 37 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.20 1.70 7.84 -2.91 -0.02 1.68 16 40 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.12 1.67 8.14 -2.39 -0.02 1.66 16 42 H 0.41 7.11 8.48 -92.71 -0.79 6.33 16 43 H 0.41 12.56 7.45 -92.71 -0.69 11.87 16 44 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 45 H 0.10 3.17 8.14 -2.38 -0.02 3.15 16 46 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 47 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -67.88 398.32 1.12 -66.76 By element: Atomic # 1 Polarization: 42.62 SS G_CDS: -1.18 Total: 41.44 kcal Atomic # 6 Polarization: 21.32 SS G_CDS: 6.86 Total: 28.19 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -7.27 Total: -128.78 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: 0.69 Total: -51.03 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -67.88 1.12 -66.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345078269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.657 kcal (2) G-P(sol) polarization free energy of solvation -67.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds