Wall clock time and date at job start Tue Mar 31 2020 21:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47290 * 2 1 4 4 C 1.53004 * 109.47313 * 304.39059 * 3 2 1 5 5 C 1.52998 * 109.47069 * 295.03263 * 4 3 2 6 6 C 1.52999 * 109.47030 * 64.38863 * 3 2 1 7 7 N 1.46505 * 109.46678 * 65.00195 * 6 3 2 8 8 C 1.46497 * 119.99834 * 269.99866 * 7 6 3 9 9 C 1.50706 * 109.47250 * 264.54812 * 8 7 6 10 10 H 1.07995 * 119.99705 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99873 * 179.97438 * 9 8 7 12 12 N 1.31521 * 119.99820 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00333 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.46894 * 89.99671 * 13 11 9 15 15 H 1.48499 * 109.47284 * 209.99575 * 13 11 9 16 16 H 1.48497 * 109.47226 * 330.00007 * 13 11 9 17 17 C 1.34773 * 120.00150 * 90.00026 * 7 6 3 18 18 O 1.21544 * 119.99850 * 4.78449 * 17 7 6 19 19 C 1.47932 * 120.00141 * 184.77996 * 17 7 6 20 20 N 1.33604 * 120.55933 * 284.34434 * 19 17 7 21 21 C 1.31794 * 120.88674 * 180.27517 * 20 19 17 22 22 O 1.35560 * 118.96334 * 179.72072 * 21 20 19 23 23 N 1.32537 * 122.06688 * 359.44089 * 21 20 19 24 24 C 1.32332 * 121.01508 * 0.28194 * 23 21 20 25 25 O 1.35566 * 120.49448 * 179.97438 * 24 23 21 26 26 C 1.39778 * 120.55463 * 104.07718 * 19 17 7 27 27 N 1.39230 * 120.92696 * 359.97438 * 26 19 17 28 28 H 1.09003 * 109.47432 * 65.24525 * 1 2 3 29 29 H 1.08994 * 109.47157 * 185.24389 * 1 2 3 30 30 H 1.09000 * 109.46789 * 305.24283 * 1 2 3 31 31 H 1.09008 * 109.47087 * 240.00319 * 2 1 3 32 32 H 1.08996 * 109.47525 * 120.00345 * 2 1 3 33 33 H 1.08995 * 109.47537 * 184.39384 * 3 2 1 34 34 H 1.09012 * 109.46673 * 55.02669 * 4 3 2 35 35 H 1.08999 * 109.47225 * 175.02628 * 4 3 2 36 36 H 1.09002 * 109.46760 * 185.30502 * 5 4 3 37 37 H 1.09002 * 109.46980 * 305.30276 * 5 4 3 38 38 H 1.08998 * 109.47265 * 65.30361 * 5 4 3 39 39 H 1.08994 * 109.47232 * 305.00497 * 6 3 2 40 40 H 1.09001 * 109.47283 * 185.00130 * 6 3 2 41 41 H 1.09001 * 109.47552 * 24.55179 * 8 7 6 42 42 H 1.09003 * 109.47097 * 144.54979 * 8 7 6 43 43 H 0.96996 * 120.00137 * 180.02562 * 12 11 9 44 44 H 0.96698 * 113.99687 * 269.73075 * 22 21 20 45 45 H 0.96701 * 113.99965 * 89.99863 * 25 24 23 46 46 H 0.97005 * 119.99515 * 174.92361 * 27 26 19 47 47 H 0.96997 * 120.00347 * 354.92376 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4419 2.1950 -1.1904 5 6 1.9592 1.5821 -2.4933 6 6 1.6222 2.1312 1.3008 7 7 2.2904 1.4838 2.4325 8 6 1.6511 0.3544 3.1121 9 6 0.8992 0.8545 4.3187 10 1 0.8974 1.9083 4.5552 11 6 0.2127 -0.0331 5.1199 12 7 -0.4430 0.4033 6.1731 13 14 0.2152 -1.8556 4.7103 14 1 1.3607 -2.5137 5.3884 15 1 -1.0545 -2.4692 5.1756 16 1 0.3415 -2.0326 3.2413 17 6 3.4933 1.9272 2.8483 18 8 3.9841 2.9173 2.3422 19 6 4.2161 1.2090 3.9207 20 7 3.8349 1.3297 5.1955 21 6 4.4775 0.6971 6.1566 22 8 4.0608 0.8519 7.4373 23 7 5.5149 -0.0901 5.9098 24 6 5.9556 -0.2702 4.6751 25 8 7.0179 -1.0773 4.4347 26 6 5.3059 0.3882 3.6167 27 7 5.7356 0.2270 2.3022 28 1 -0.3634 0.4303 -0.9332 29 1 -0.3633 -1.0233 0.0939 30 1 -0.3633 0.5930 0.8393 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.1272 1.4436 -0.0787 34 1 0.3549 2.1187 -1.1594 35 1 1.7341 3.2440 -1.1411 36 1 1.6090 2.1753 -3.3380 37 1 3.0491 1.5727 -2.4828 38 1 1.5880 0.5615 -2.5872 39 1 0.5420 2.0521 1.4230 40 1 1.9076 3.1825 1.2633 41 1 0.9572 -0.1353 2.4289 42 1 2.4131 -0.3579 3.4285 43 1 -0.9256 -0.2211 6.7370 44 1 4.4850 1.5857 7.9028 45 1 6.7814 -2.0006 4.2711 46 1 6.5370 -0.2859 2.1134 47 1 5.2336 0.6276 1.5752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345295635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:24 Heat of formation + Delta-G solvation = -60.786162 kcal Electronic energy + Delta-G solvation = -31751.953447 eV Core-core repulsion = 27550.126437 eV Total energy + Delta-G solvation = -4201.827009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17157 -39.49138 -38.01937 -37.46996 -36.31537 -34.83567 -34.70395 -32.81000 -32.40458 -31.03939 -29.32763 -28.51416 -27.29054 -25.46079 -23.99841 -23.34645 -22.96623 -22.52611 -20.24145 -19.03619 -18.80728 -18.18870 -17.97414 -17.09112 -16.83909 -16.65461 -15.92416 -15.68025 -15.46136 -15.18573 -14.94338 -14.81058 -14.22547 -14.01991 -13.35123 -13.31534 -13.03603 -12.88865 -12.65143 -12.42667 -12.34654 -12.03162 -11.86479 -11.60260 -11.47428 -11.37753 -11.29673 -11.14565 -10.96001 -10.93421 -10.77076 -10.47192 -10.34712 -10.27994 -10.20472 -10.17479 -9.85577 -9.48858 -8.79957 -8.61666 -7.92326 -7.67566 -6.09722 -4.07896 1.00352 1.14192 2.76901 3.07644 3.19130 3.22756 3.28266 3.45902 3.60961 3.74010 4.13183 4.32645 4.51491 4.84954 4.94452 4.95123 5.02925 5.19245 5.22155 5.31240 5.42065 5.42727 5.50003 5.71518 5.77862 5.84933 5.94093 5.96176 5.98739 6.09151 6.17272 6.21532 6.30429 6.32296 6.38669 6.49619 6.55113 6.69705 6.76216 7.14641 7.18437 7.35164 7.49100 7.50059 7.88626 7.89188 8.32223 8.41795 8.57487 9.01275 9.48602 11.03551 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009230 B = 0.005810 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.754757 B = 4818.191509 C = 6503.855613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.124 4.124 3 C -0.101 4.101 4 C -0.119 4.119 5 C -0.149 4.149 6 C 0.118 3.882 7 N -0.567 5.567 8 C 0.208 3.792 9 C -0.521 4.521 10 H 0.083 0.917 11 C 0.083 3.917 12 N -0.883 5.883 13 Si 0.856 3.144 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.266 1.266 17 C 0.582 3.418 18 O -0.548 6.548 19 C 0.112 3.888 20 N -0.413 5.413 21 C 0.456 3.544 22 O -0.443 6.443 23 N -0.504 5.504 24 C 0.299 3.701 25 O -0.469 6.469 26 C 0.127 3.873 27 N -0.845 5.845 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.013 0.987 43 H 0.264 0.736 44 H 0.400 0.600 45 H 0.397 0.603 46 H 0.406 0.594 47 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.878 -2.630 -12.294 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.161 4.161 3 C -0.120 4.120 4 C -0.157 4.157 5 C -0.206 4.206 6 C -0.005 4.005 7 N -0.295 5.295 8 C 0.087 3.913 9 C -0.559 4.559 10 H 0.101 0.899 11 C -0.121 4.121 12 N -0.521 5.521 13 Si 0.683 3.317 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.190 1.190 17 C 0.367 3.633 18 O -0.426 6.426 19 C -0.043 4.043 20 N -0.138 5.138 21 C 0.150 3.850 22 O -0.244 6.244 23 N -0.239 5.239 24 C 0.103 3.897 25 O -0.274 6.274 26 C 0.013 3.987 27 N -0.386 5.386 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.031 0.969 43 H 0.074 0.926 44 H 0.256 0.744 45 H 0.255 0.745 46 H 0.236 0.764 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 8.599 -2.040 -11.401 14.425 hybrid contribution 0.329 -1.519 -0.755 1.728 sum 8.928 -3.559 -12.156 15.497 Atomic orbital electron populations 1.21920 0.95816 1.01754 1.02063 1.21650 0.96491 0.96226 1.01771 1.21589 1.00220 0.95541 0.94675 1.21550 1.01026 0.99380 0.93788 1.21767 1.00929 1.00843 0.97095 1.21579 0.98153 0.97069 0.83713 1.47850 1.16844 1.33892 1.30909 1.19973 0.93173 0.84122 0.93991 1.21199 1.30129 0.97009 1.07578 0.89853 1.24742 0.95016 0.97609 0.94695 1.69860 1.32407 1.34683 1.15112 0.87172 0.78164 0.87238 0.79108 1.20303 1.20742 1.19037 1.17457 0.81599 0.83384 0.80861 1.90754 1.68396 1.25007 1.58447 1.20680 0.94421 0.97308 0.91912 1.68031 1.26654 1.20299 0.98799 1.19426 0.86802 0.92286 0.86516 1.84924 1.65598 1.55246 1.18614 1.67062 1.13504 1.19934 1.23407 1.18336 0.89652 0.96079 0.85674 1.84787 1.27951 1.23340 1.91359 1.19418 0.94692 0.97189 0.87405 1.41991 1.32437 1.60934 1.03245 0.92733 0.93199 0.91421 0.92474 0.91423 0.91437 0.91272 0.91941 0.93134 0.93006 0.92675 0.89368 0.90214 0.93576 0.96947 0.92584 0.74365 0.74535 0.76378 0.76480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 8.51 37.16 0.32 -1.73 16 2 C -0.12 -1.60 4.83 -26.73 -0.13 -1.73 16 3 C -0.10 -1.31 2.37 -90.62 -0.21 -1.52 16 4 C -0.12 -1.29 5.09 -26.73 -0.14 -1.43 16 5 C -0.15 -1.39 9.53 37.16 0.35 -1.03 16 6 C 0.12 1.92 4.77 -4.04 -0.02 1.90 16 7 N -0.57 -10.97 2.29 -176.14 -0.40 -11.38 16 8 C 0.21 4.54 2.89 -5.19 -0.01 4.53 16 9 C -0.52 -13.87 9.14 -34.44 -0.31 -14.19 16 10 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 11 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 12 N -0.88 -26.36 13.96 55.43 0.77 -25.58 16 13 Si 0.86 20.51 27.47 -169.99 -4.67 15.84 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 17 C 0.58 11.74 6.15 -12.29 -0.08 11.67 16 18 O -0.55 -11.59 16.66 5.33 0.09 -11.50 16 19 C 0.11 2.23 4.73 -82.55 -0.39 1.84 16 20 N -0.41 -9.10 9.64 -11.28 -0.11 -9.21 16 21 C 0.46 9.29 8.69 -91.51 -0.80 8.50 16 22 O -0.44 -8.42 13.64 -18.38 -0.25 -8.67 16 23 N -0.50 -9.35 10.46 -14.61 -0.15 -9.50 16 24 C 0.30 4.79 7.87 -16.46 -0.13 4.66 16 25 O -0.47 -5.62 12.95 -18.39 -0.24 -5.86 16 26 C 0.13 2.07 6.84 -83.05 -0.57 1.50 16 27 N -0.85 -10.27 9.00 32.82 0.30 -9.98 16 28 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.99 5.73 -51.93 -0.30 0.69 16 31 H 0.06 0.64 6.91 -51.92 -0.36 0.28 16 32 H 0.07 1.01 5.62 -51.93 -0.29 0.72 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.73 6.19 -51.92 -0.32 0.41 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.50 6.93 -51.93 -0.36 0.14 16 39 H 0.09 1.45 6.15 -51.93 -0.32 1.13 16 40 H 0.08 1.34 7.36 -51.93 -0.38 0.96 16 41 H 0.05 0.97 4.21 -51.93 -0.22 0.75 16 42 H 0.01 0.29 6.44 -51.93 -0.33 -0.05 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.40 5.12 9.06 45.56 0.41 5.53 16 45 H 0.40 2.88 9.06 45.56 0.41 3.29 16 46 H 0.41 3.67 8.32 -40.82 -0.34 3.33 16 47 H 0.41 4.98 7.79 -40.82 -0.32 4.67 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -34.90 377.13 -5.96 -40.85 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -4.76 Total: 14.13 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: -2.22 Total: 15.17 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: 0.40 Total: -65.64 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.40 Total: -26.03 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.90 -5.96 -40.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345295635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.931 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds