Wall clock time and date at job start Tue Mar 31 2020 21:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47290 * 2 1 4 4 C 1.53004 * 109.47313 * 304.39059 * 3 2 1 5 5 C 1.52998 * 109.47069 * 295.03263 * 4 3 2 6 6 C 1.52999 * 109.47030 * 64.38863 * 3 2 1 7 7 N 1.46505 * 109.46678 * 65.00195 * 6 3 2 8 8 C 1.46497 * 119.99834 * 269.99866 * 7 6 3 9 9 C 1.50706 * 109.47250 * 264.54812 * 8 7 6 10 10 H 1.07995 * 119.99705 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99873 * 179.97438 * 9 8 7 12 12 N 1.31521 * 119.99820 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00333 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.46894 * 89.99671 * 13 11 9 15 15 H 1.48499 * 109.47284 * 209.99575 * 13 11 9 16 16 H 1.48497 * 109.47226 * 330.00007 * 13 11 9 17 17 C 1.34773 * 120.00150 * 90.00026 * 7 6 3 18 18 O 1.21544 * 119.99850 * 4.78449 * 17 7 6 19 19 C 1.47932 * 120.00141 * 184.77996 * 17 7 6 20 20 N 1.33604 * 120.55933 * 284.34434 * 19 17 7 21 21 C 1.31794 * 120.88674 * 180.27517 * 20 19 17 22 22 O 1.35560 * 118.96334 * 179.72072 * 21 20 19 23 23 N 1.32537 * 122.06688 * 359.44089 * 21 20 19 24 24 C 1.32332 * 121.01508 * 0.28194 * 23 21 20 25 25 O 1.35566 * 120.49448 * 179.97438 * 24 23 21 26 26 C 1.39778 * 120.55463 * 104.07718 * 19 17 7 27 27 N 1.39230 * 120.92696 * 359.97438 * 26 19 17 28 28 H 1.09003 * 109.47432 * 65.24525 * 1 2 3 29 29 H 1.08994 * 109.47157 * 185.24389 * 1 2 3 30 30 H 1.09000 * 109.46789 * 305.24283 * 1 2 3 31 31 H 1.09008 * 109.47087 * 240.00319 * 2 1 3 32 32 H 1.08996 * 109.47525 * 120.00345 * 2 1 3 33 33 H 1.08995 * 109.47537 * 184.39384 * 3 2 1 34 34 H 1.09012 * 109.46673 * 55.02669 * 4 3 2 35 35 H 1.08999 * 109.47225 * 175.02628 * 4 3 2 36 36 H 1.09002 * 109.46760 * 185.30502 * 5 4 3 37 37 H 1.09002 * 109.46980 * 305.30276 * 5 4 3 38 38 H 1.08998 * 109.47265 * 65.30361 * 5 4 3 39 39 H 1.08994 * 109.47232 * 305.00497 * 6 3 2 40 40 H 1.09001 * 109.47283 * 185.00130 * 6 3 2 41 41 H 1.09001 * 109.47552 * 24.55179 * 8 7 6 42 42 H 1.09003 * 109.47097 * 144.54979 * 8 7 6 43 43 H 0.96996 * 120.00137 * 180.02562 * 12 11 9 44 44 H 0.96698 * 113.99687 * 269.73075 * 22 21 20 45 45 H 0.96701 * 113.99965 * 89.99863 * 25 24 23 46 46 H 0.97005 * 119.99515 * 174.92361 * 27 26 19 47 47 H 0.96997 * 120.00347 * 354.92376 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4419 2.1950 -1.1904 5 6 1.9592 1.5821 -2.4933 6 6 1.6222 2.1312 1.3008 7 7 2.2904 1.4838 2.4325 8 6 1.6511 0.3544 3.1121 9 6 0.8992 0.8545 4.3187 10 1 0.8974 1.9083 4.5552 11 6 0.2127 -0.0331 5.1199 12 7 -0.4430 0.4033 6.1731 13 14 0.2152 -1.8556 4.7103 14 1 1.3607 -2.5137 5.3884 15 1 -1.0545 -2.4692 5.1756 16 1 0.3415 -2.0326 3.2413 17 6 3.4933 1.9272 2.8483 18 8 3.9841 2.9173 2.3422 19 6 4.2161 1.2090 3.9207 20 7 3.8349 1.3297 5.1955 21 6 4.4775 0.6971 6.1566 22 8 4.0608 0.8519 7.4373 23 7 5.5149 -0.0901 5.9098 24 6 5.9556 -0.2702 4.6751 25 8 7.0179 -1.0773 4.4347 26 6 5.3059 0.3882 3.6167 27 7 5.7356 0.2270 2.3022 28 1 -0.3634 0.4303 -0.9332 29 1 -0.3633 -1.0233 0.0939 30 1 -0.3633 0.5930 0.8393 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.1272 1.4436 -0.0787 34 1 0.3549 2.1187 -1.1594 35 1 1.7341 3.2440 -1.1411 36 1 1.6090 2.1753 -3.3380 37 1 3.0491 1.5727 -2.4828 38 1 1.5880 0.5615 -2.5872 39 1 0.5420 2.0521 1.4230 40 1 1.9076 3.1825 1.2633 41 1 0.9572 -0.1353 2.4289 42 1 2.4131 -0.3579 3.4285 43 1 -0.9256 -0.2211 6.7370 44 1 4.4850 1.5857 7.9028 45 1 6.7814 -2.0006 4.2711 46 1 6.5370 -0.2859 2.1134 47 1 5.2336 0.6276 1.5752 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345295635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:23 Heat of formation + Delta-G solvation = -95.134398 kcal Electronic energy + Delta-G solvation = -31753.442898 eV Core-core repulsion = 27550.126437 eV Total energy + Delta-G solvation = -4203.316461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.56034 -40.94250 -39.26567 -38.67074 -37.64645 -36.32778 -36.00414 -34.41994 -34.17193 -31.95646 -30.79514 -29.96632 -28.79963 -26.73783 -25.23960 -24.70885 -24.33153 -23.98385 -21.58900 -20.24820 -20.04648 -19.58268 -19.26266 -19.03754 -18.20051 -18.08798 -17.39299 -16.93151 -16.61781 -16.54405 -16.27662 -16.10330 -15.86825 -15.35230 -14.87204 -14.51866 -14.45854 -14.32041 -13.82109 -13.77690 -13.63938 -13.50791 -13.12600 -12.89335 -12.73438 -12.68671 -12.62127 -12.55611 -12.38986 -12.20376 -12.06487 -11.94201 -11.77323 -11.65397 -11.52362 -11.42331 -11.21553 -11.17022 -10.74348 -10.24887 -9.53222 -8.89207 -8.23626 -6.25805 -0.39600 -0.18676 1.21662 1.28888 1.30463 1.38535 1.75703 2.07326 2.31473 2.33901 2.48233 2.75534 3.06164 3.11282 3.53899 3.84042 3.90924 3.96568 4.03233 4.12812 4.38713 4.46338 4.53848 4.61591 4.65270 4.69587 4.74692 4.85084 4.89328 4.94794 5.01758 5.09858 5.16330 5.34465 5.36157 5.42874 5.46685 5.49086 5.53490 5.58669 5.69661 5.96401 6.16253 6.41821 6.42856 6.58835 6.63526 6.77485 6.90514 7.00657 7.34580 8.93546 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009230 B = 0.005810 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.754757 B = 4818.191509 C = 6503.855613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.117 4.117 5 C -0.145 4.145 6 C 0.112 3.888 7 N -0.566 5.566 8 C 0.226 3.774 9 C -0.510 4.510 10 H 0.030 0.970 11 C 0.024 3.976 12 N -0.936 5.936 13 Si 0.918 3.082 14 H -0.282 1.282 15 H -0.280 1.280 16 H -0.228 1.228 17 C 0.582 3.418 18 O -0.564 6.564 19 C 0.073 3.927 20 N -0.456 5.456 21 C 0.436 3.564 22 O -0.462 6.462 23 N -0.509 5.509 24 C 0.316 3.684 25 O -0.456 6.456 26 C 0.144 3.856 27 N -0.820 5.820 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.014 0.986 43 H 0.263 0.737 44 H 0.419 0.581 45 H 0.424 0.576 46 H 0.425 0.575 47 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.489 -5.088 -15.496 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.158 4.158 3 C -0.109 4.109 4 C -0.155 4.155 5 C -0.202 4.202 6 C -0.010 4.010 7 N -0.294 5.294 8 C 0.104 3.896 9 C -0.549 4.549 10 H 0.049 0.951 11 C -0.175 4.175 12 N -0.576 5.576 13 Si 0.742 3.258 14 H -0.208 1.208 15 H -0.206 1.206 16 H -0.151 1.151 17 C 0.367 3.633 18 O -0.444 6.444 19 C -0.080 4.080 20 N -0.182 5.182 21 C 0.130 3.870 22 O -0.266 6.266 23 N -0.245 5.245 24 C 0.117 3.883 25 O -0.266 6.266 26 C 0.028 3.972 27 N -0.361 5.361 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.031 0.969 43 H 0.072 0.928 44 H 0.279 0.721 45 H 0.286 0.714 46 H 0.259 0.741 47 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 10.239 -4.507 -14.688 18.464 hybrid contribution -0.038 -0.675 0.217 0.710 sum 10.201 -5.182 -14.471 18.448 Atomic orbital electron populations 1.21924 0.95843 1.01625 1.02205 1.21629 0.96404 0.95777 1.02015 1.21492 1.00338 0.95731 0.93302 1.21536 1.01179 0.99070 0.93684 1.21737 1.01046 1.01224 0.96211 1.21797 0.97691 0.96890 0.84625 1.47843 1.16698 1.33430 1.31408 1.19649 0.92820 0.84695 0.92420 1.21273 1.29915 0.94526 1.09175 0.95148 1.25573 0.94752 1.02667 0.94464 1.70037 1.34292 1.36428 1.16878 0.86168 0.77778 0.80874 0.81020 1.20828 1.20595 1.15096 1.17616 0.81718 0.83154 0.80794 1.90723 1.68886 1.25537 1.59218 1.20663 0.96467 0.99641 0.91241 1.67871 1.28335 1.21982 1.00057 1.19448 0.87773 0.93337 0.86453 1.84849 1.66534 1.56514 1.18699 1.67139 1.13115 1.19633 1.24567 1.18458 0.89277 0.95671 0.84854 1.84763 1.25931 1.24866 1.91009 1.19340 0.93306 0.95566 0.89034 1.41977 1.32625 1.59860 1.01646 0.90616 0.92937 0.93819 0.89897 0.93382 0.91349 0.90908 0.92255 0.92016 0.92813 0.91998 0.89956 0.91250 0.91786 0.96861 0.92797 0.72125 0.71421 0.74123 0.76117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 8.51 71.98 0.61 -3.09 16 2 C -0.12 -2.77 4.83 30.60 0.15 -2.63 16 3 C -0.09 -2.15 2.37 -10.79 -0.03 -2.17 16 4 C -0.12 -2.25 5.09 30.60 0.16 -2.10 16 5 C -0.14 -2.20 9.53 71.98 0.69 -1.51 16 6 C 0.11 3.65 4.77 86.38 0.41 4.06 16 7 N -0.57 -22.09 2.29 -829.46 -1.90 -23.99 16 8 C 0.23 9.83 2.89 85.64 0.25 10.08 16 9 C -0.51 -28.18 9.14 25.60 0.23 -27.94 16 10 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 11 C 0.02 1.37 5.47 84.65 0.46 1.83 16 12 N -0.94 -58.34 13.96 21.45 0.30 -58.05 16 13 Si 0.92 42.14 27.47 68.60 1.88 44.03 16 14 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 16 H -0.23 -9.00 6.54 99.48 0.65 -8.35 16 17 C 0.58 23.70 6.15 86.81 0.53 24.24 16 18 O -0.56 -24.10 16.66 -3.85 -0.06 -24.16 16 19 C 0.07 2.92 4.73 41.82 0.20 3.12 16 20 N -0.46 -20.83 9.64 -302.77 -2.92 -23.75 16 21 C 0.44 18.18 8.69 180.66 1.57 19.76 16 22 O -0.46 -18.32 13.64 -88.67 -1.21 -19.53 16 23 N -0.51 -18.46 10.46 -425.80 -4.45 -22.91 16 24 C 0.32 9.41 7.87 85.19 0.67 10.08 16 25 O -0.46 -9.17 12.95 -88.73 -1.15 -10.32 16 26 C 0.14 4.45 6.84 38.91 0.27 4.71 16 27 N -0.82 -17.43 9.00 -50.08 -0.45 -17.88 16 28 H 0.07 1.42 6.56 -2.39 -0.02 1.41 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 1.22 5.73 -2.39 -0.01 1.21 16 31 H 0.08 1.51 6.91 -2.38 -0.02 1.49 16 32 H 0.05 1.30 5.62 -2.39 -0.01 1.29 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.36 6.19 -2.38 -0.01 1.34 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.87 6.93 -2.39 -0.02 0.85 16 39 H 0.08 2.76 6.15 -2.39 -0.01 2.75 16 40 H 0.07 2.39 7.36 -2.39 -0.02 2.37 16 41 H 0.06 2.59 4.21 -2.39 -0.01 2.58 16 42 H 0.01 0.60 6.44 -2.39 -0.02 0.58 16 43 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.42 11.46 9.06 -74.06 -0.67 10.79 16 45 H 0.42 4.14 9.06 -74.06 -0.67 3.47 16 46 H 0.43 5.90 8.32 -92.70 -0.77 5.13 16 47 H 0.41 8.90 7.79 -92.71 -0.72 8.18 16 Total: -1.00 -79.74 377.13 -5.60 -85.35 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -1.81 Total: 32.77 kcal Atomic # 6 Polarization: 32.27 SS G_CDS: 6.17 Total: 38.44 kcal Atomic # 7 Polarization: -137.15 SS G_CDS: -9.42 Total: -146.57 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -2.42 Total: -54.01 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.03 kcal Total: -79.74 -5.60 -85.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345295635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.787 kcal (2) G-P(sol) polarization free energy of solvation -79.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds