Wall clock time and date at job start Tue Mar 31 2020 20:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47099 * 2 1 4 4 C 1.50706 * 109.46676 * 119.99342 * 2 1 3 5 5 N 1.31133 * 126.54367 * 120.25564 * 4 2 1 6 6 C 1.34502 * 105.61256 * 180.12056 * 5 4 2 7 7 C 1.50699 * 126.28857 * 179.90106 * 6 5 4 8 8 H 1.08998 * 109.70979 * 358.94972 * 7 6 5 9 9 C 1.52882 * 109.61634 * 238.64606 * 7 6 5 10 10 O 1.42961 * 109.29454 * 188.11420 * 9 7 6 11 11 C 1.42966 * 114.16582 * 62.45545 * 10 9 7 12 12 C 1.53297 * 109.21982 * 297.41454 * 11 10 9 13 13 N 1.47152 * 108.38421 * 52.30415 * 12 11 10 14 14 C 1.34780 * 120.98378 * 129.43686 * 13 12 11 15 15 O 1.21579 * 119.99990 * 185.45202 * 14 13 12 16 16 N 1.34773 * 119.99744 * 5.46034 * 14 13 12 17 17 C 1.46498 * 119.99830 * 175.05700 * 16 14 13 18 18 C 1.53002 * 109.47109 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47284 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99736 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99962 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99923 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99718 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47258 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46947 * 120.00003 * 23 21 19 26 26 H 1.48496 * 109.46717 * 239.99763 * 23 21 19 27 27 N 1.29946 * 107.42060 * 359.64339 * 6 5 4 28 28 O 1.21300 * 110.25201 * 0.22304 * 27 6 5 29 29 H 1.08993 * 109.47166 * 300.00329 * 1 2 3 30 30 H 1.08998 * 109.46421 * 60.00470 * 1 2 3 31 31 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47166 * 239.99671 * 2 1 3 33 33 H 1.08994 * 109.47135 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46990 * 299.99643 * 3 2 1 35 35 H 1.09001 * 109.47085 * 59.99613 * 3 2 1 36 36 H 1.09000 * 109.58206 * 68.10680 * 9 7 6 37 37 H 1.09000 * 109.37219 * 307.99949 * 9 7 6 38 38 H 1.08995 * 109.51090 * 177.49416 * 11 10 9 39 39 H 1.09000 * 109.55519 * 57.36320 * 11 10 9 40 40 H 1.08998 * 109.68549 * 292.58258 * 12 11 10 41 41 H 1.08998 * 109.67842 * 172.02008 * 12 11 10 42 42 H 0.97001 * 119.99996 * 355.04721 * 16 14 13 43 43 H 1.08989 * 109.47553 * 59.99474 * 17 16 14 44 44 H 1.09000 * 109.46920 * 299.98984 * 17 16 14 45 45 H 1.09006 * 109.47162 * 299.99464 * 18 17 16 46 46 H 1.09004 * 109.47410 * 59.99346 * 18 17 16 47 47 H 0.97005 * 120.00076 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 2.7930 -1.7780 1.2601 6 6 2.9812 -2.0526 2.5633 7 6 3.7884 -3.1935 3.1269 8 1 4.1954 -3.7933 2.3128 9 6 2.8960 -4.0673 4.0085 10 8 3.7028 -5.0323 4.6880 11 6 4.6695 -4.4658 5.5761 12 6 5.6563 -3.6131 4.7704 13 7 4.8873 -2.6640 3.9499 14 6 5.1773 -1.3478 3.9563 15 8 4.4699 -0.5665 3.3503 16 7 6.2515 -0.8978 4.6345 17 6 6.6296 0.5153 4.5536 18 6 7.8736 0.7602 5.4100 19 6 8.2628 2.2137 5.3264 20 1 7.6814 2.8945 4.7225 21 6 9.3619 2.6740 6.0201 22 7 10.0702 1.8448 6.7551 23 14 9.8448 4.4755 5.9158 24 1 8.8934 5.1925 5.0292 25 1 9.8072 5.0774 7.2729 26 1 11.2180 4.5886 5.3620 27 7 2.3436 -1.1501 3.2470 28 8 1.7919 -0.3695 2.5002 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.1598 -4.5797 3.3891 37 1 2.3849 -3.4406 4.7394 38 1 5.2092 -5.2647 6.0843 39 1 4.1655 -3.8406 6.3132 40 1 6.2546 -4.2558 4.1245 41 1 6.3087 -3.0656 5.4505 42 1 6.7743 -1.5095 5.1761 43 1 5.8094 1.1324 4.9201 44 1 6.8448 0.7750 3.5171 45 1 7.6580 0.5006 6.4465 46 1 8.6941 0.1430 5.0440 47 1 10.8433 2.1687 7.2434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345815047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:27 Heat of formation + Delta-G solvation = 16.222325 kcal Electronic energy + Delta-G solvation = -30573.512442 eV Core-core repulsion = 26375.024772 eV Total energy + Delta-G solvation = -4198.487671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.28553 -40.64225 -38.54258 -36.33025 -35.96027 -34.81863 -34.70055 -32.98561 -32.15968 -30.59352 -29.67811 -27.88205 -27.47231 -25.35057 -24.69552 -24.23135 -23.12204 -22.37552 -21.26533 -20.62054 -19.42719 -18.20033 -17.72791 -17.15903 -16.72388 -16.41954 -16.17474 -15.83772 -15.62873 -15.41596 -15.11796 -14.55016 -14.50191 -14.30390 -14.12494 -13.70284 -13.53555 -12.99742 -12.95774 -12.53200 -12.50142 -12.35240 -12.27903 -11.92873 -11.69977 -11.66196 -11.48372 -11.30148 -11.26443 -11.12802 -11.07906 -10.79400 -10.64837 -10.51789 -10.38619 -10.31540 -9.65142 -9.33230 -8.86139 -8.81777 -8.50931 -8.29203 -6.12430 -4.15105 1.48870 2.20806 2.81962 3.02365 3.25398 3.26412 3.33968 3.39229 3.42514 3.71326 4.07809 4.21329 4.38206 4.43383 4.64414 4.67119 4.73079 4.73619 4.80976 4.88982 5.01073 5.16928 5.24875 5.25603 5.33523 5.42921 5.47427 5.49001 5.56453 5.60457 5.70381 5.87168 5.91311 6.02785 6.11283 6.24305 6.29385 6.33467 6.70210 6.70790 6.90029 6.95716 7.50040 7.57898 7.86203 8.14949 8.27670 8.47128 8.81078 8.91310 9.49821 10.99307 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009601 B = 0.003405 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.525508 B = 8221.130633 C =10838.814203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.004 3.996 3 C -0.151 4.151 4 C 0.173 3.827 5 N -0.478 5.478 6 C 0.185 3.815 7 C 0.228 3.772 8 H 0.107 0.893 9 C 0.059 3.941 10 O -0.372 6.372 11 C 0.045 3.955 12 C 0.079 3.921 13 N -0.637 5.637 14 C 0.707 3.293 15 O -0.583 6.583 16 N -0.734 5.734 17 C 0.142 3.858 18 C 0.014 3.986 19 C -0.520 4.520 20 H 0.060 0.940 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.897 3.103 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 N -0.336 5.336 28 O 0.092 5.908 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.392 0.608 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.371 -12.459 -9.756 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 C -0.209 4.209 4 C -0.048 4.048 5 N -0.213 5.213 6 C -0.088 4.088 7 C 0.121 3.879 8 H 0.124 0.876 9 C -0.020 4.020 10 O -0.289 6.289 11 C -0.033 4.033 12 C -0.044 4.044 13 N -0.379 5.379 14 C 0.409 3.591 15 O -0.460 6.460 16 N -0.389 5.389 17 C 0.019 3.981 18 C -0.023 4.023 19 C -0.559 4.559 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 N -0.040 5.040 28 O 0.028 5.972 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.227 0.773 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.439 -12.375 -9.373 23.347 hybrid contribution 0.987 1.115 0.314 1.522 sum -16.452 -11.259 -9.059 21.898 Atomic orbital electron populations 1.21901 0.92574 1.02826 1.03417 1.19733 0.96570 0.95919 0.89402 1.21893 1.02348 0.93389 1.03245 1.28388 0.95276 0.92367 0.88773 1.71651 1.16197 1.14750 1.18655 1.24427 1.00588 0.97706 0.86080 1.19566 0.85860 0.89052 0.93383 0.87571 1.22903 0.92296 0.91346 0.95484 1.87988 1.49878 1.32017 1.59037 1.23065 0.90336 0.98273 0.91630 1.22385 0.94637 0.92453 0.94937 1.47324 1.35340 1.06184 1.49027 1.15902 0.81781 0.81057 0.80350 1.90904 1.50953 1.54442 1.49664 1.45708 1.29078 1.12986 1.51141 1.21603 0.98844 0.76890 1.00749 1.19320 0.90662 0.97727 0.94623 1.21065 1.11948 0.93713 1.29155 0.92220 1.24996 0.96170 0.98067 0.95051 1.69962 1.18229 1.34754 1.30355 0.86448 0.78421 0.84743 0.77923 1.19570 1.20884 1.20898 1.74479 1.11498 1.01137 1.16906 1.85196 1.53763 1.42909 1.15296 0.91508 0.90717 0.92021 0.87130 0.91632 0.90804 0.91441 0.87158 0.91705 0.87008 0.92142 0.90007 0.88640 0.77293 0.92743 0.92959 0.96011 0.96014 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.18 37.16 0.34 -0.67 16 2 C 0.00 0.04 3.39 -91.77 -0.31 -0.27 16 3 C -0.15 -1.37 9.18 37.16 0.34 -1.03 16 4 C 0.17 2.40 7.02 -13.06 -0.09 2.31 16 5 N -0.48 -7.52 11.55 -9.87 -0.11 -7.63 16 6 C 0.18 2.99 4.65 -156.37 -0.73 2.26 16 7 C 0.23 3.12 3.60 -68.79 -0.25 2.87 16 8 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 9 C 0.06 0.66 6.25 37.10 0.23 0.89 16 10 O -0.37 -4.04 10.74 -35.23 -0.38 -4.42 16 11 C 0.04 0.41 6.99 37.31 0.26 0.67 16 12 C 0.08 0.84 6.57 -3.53 -0.02 0.82 16 13 N -0.64 -9.33 3.03 -172.00 -0.52 -9.86 16 14 C 0.71 13.24 8.21 -86.92 -0.71 12.52 16 15 O -0.58 -12.70 11.73 -5.00 -0.06 -12.76 16 16 N -0.73 -13.65 5.46 -65.23 -0.36 -14.01 16 17 C 0.14 3.14 5.62 -4.04 -0.02 3.12 16 18 C 0.01 0.36 5.09 -27.88 -0.14 0.21 16 19 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 20 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 23 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 N -0.34 -5.89 9.83 30.90 0.30 -5.59 16 28 O 0.09 1.48 11.28 7.83 0.09 1.57 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.96 5.78 -51.93 -0.30 0.66 16 42 H 0.39 6.30 6.03 -40.82 -0.25 6.05 16 43 H 0.05 1.28 8.14 -51.94 -0.42 0.85 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -35.24 384.30 -8.32 -43.56 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.27 Total: 1.93 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -1.51 Total: 10.38 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.05 Total: -62.52 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.35 Total: -15.61 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.24 -8.32 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345815047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.783 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds