Wall clock time and date at job start Tue Mar 31 2020 20:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47099 * 2 1 4 4 C 1.50706 * 109.46676 * 119.99342 * 2 1 3 5 5 N 1.31133 * 126.54367 * 120.25564 * 4 2 1 6 6 C 1.34502 * 105.61256 * 180.12056 * 5 4 2 7 7 C 1.50699 * 126.28857 * 179.90106 * 6 5 4 8 8 H 1.08998 * 109.70979 * 358.94972 * 7 6 5 9 9 C 1.52882 * 109.61634 * 238.64606 * 7 6 5 10 10 O 1.42961 * 109.29454 * 188.11420 * 9 7 6 11 11 C 1.42966 * 114.16582 * 62.45545 * 10 9 7 12 12 C 1.53297 * 109.21982 * 297.41454 * 11 10 9 13 13 N 1.47152 * 108.38421 * 52.30415 * 12 11 10 14 14 C 1.34780 * 120.98378 * 129.43686 * 13 12 11 15 15 O 1.21579 * 119.99990 * 185.45202 * 14 13 12 16 16 N 1.34773 * 119.99744 * 5.46034 * 14 13 12 17 17 C 1.46498 * 119.99830 * 175.05700 * 16 14 13 18 18 C 1.53002 * 109.47109 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47284 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99736 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99962 * 180.02562 * 19 18 17 22 22 N 1.31509 * 119.99923 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99718 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47258 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46947 * 120.00003 * 23 21 19 26 26 H 1.48496 * 109.46717 * 239.99763 * 23 21 19 27 27 N 1.29946 * 107.42060 * 359.64339 * 6 5 4 28 28 O 1.21300 * 110.25201 * 0.22304 * 27 6 5 29 29 H 1.08993 * 109.47166 * 300.00329 * 1 2 3 30 30 H 1.08998 * 109.46421 * 60.00470 * 1 2 3 31 31 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47166 * 239.99671 * 2 1 3 33 33 H 1.08994 * 109.47135 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46990 * 299.99643 * 3 2 1 35 35 H 1.09001 * 109.47085 * 59.99613 * 3 2 1 36 36 H 1.09000 * 109.58206 * 68.10680 * 9 7 6 37 37 H 1.09000 * 109.37219 * 307.99949 * 9 7 6 38 38 H 1.08995 * 109.51090 * 177.49416 * 11 10 9 39 39 H 1.09000 * 109.55519 * 57.36320 * 11 10 9 40 40 H 1.08998 * 109.68549 * 292.58258 * 12 11 10 41 41 H 1.08998 * 109.67842 * 172.02008 * 12 11 10 42 42 H 0.97001 * 119.99996 * 355.04721 * 16 14 13 43 43 H 1.08989 * 109.47553 * 59.99474 * 17 16 14 44 44 H 1.09000 * 109.46920 * 299.98984 * 17 16 14 45 45 H 1.09006 * 109.47162 * 299.99464 * 18 17 16 46 46 H 1.09004 * 109.47410 * 59.99346 * 18 17 16 47 47 H 0.97005 * 120.00076 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 2.7930 -1.7780 1.2601 6 6 2.9812 -2.0526 2.5633 7 6 3.7884 -3.1935 3.1269 8 1 4.1954 -3.7933 2.3128 9 6 2.8960 -4.0673 4.0085 10 8 3.7028 -5.0323 4.6880 11 6 4.6695 -4.4658 5.5761 12 6 5.6563 -3.6131 4.7704 13 7 4.8873 -2.6640 3.9499 14 6 5.1773 -1.3478 3.9563 15 8 4.4699 -0.5665 3.3503 16 7 6.2515 -0.8978 4.6345 17 6 6.6296 0.5153 4.5536 18 6 7.8736 0.7602 5.4100 19 6 8.2628 2.2137 5.3264 20 1 7.6814 2.8945 4.7225 21 6 9.3619 2.6740 6.0201 22 7 10.0702 1.8448 6.7551 23 14 9.8448 4.4755 5.9158 24 1 8.8934 5.1925 5.0292 25 1 9.8072 5.0774 7.2729 26 1 11.2180 4.5886 5.3620 27 7 2.3436 -1.1501 3.2470 28 8 1.7919 -0.3695 2.5002 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.1598 -4.5797 3.3891 37 1 2.3849 -3.4406 4.7394 38 1 5.2092 -5.2647 6.0843 39 1 4.1655 -3.8406 6.3132 40 1 6.2546 -4.2558 4.1245 41 1 6.3087 -3.0656 5.4505 42 1 6.7743 -1.5095 5.1761 43 1 5.8094 1.1324 4.9201 44 1 6.8448 0.7750 3.5171 45 1 7.6580 0.5006 6.4465 46 1 8.6941 0.1430 5.0440 47 1 10.8433 2.1687 7.2434 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345815047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:26 Heat of formation + Delta-G solvation = -9.956537 kcal Electronic energy + Delta-G solvation = -30574.647643 eV Core-core repulsion = 26375.024772 eV Total energy + Delta-G solvation = -4199.622871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.46403 -41.86606 -39.70938 -37.32461 -37.12076 -36.36297 -35.91422 -34.85229 -33.31627 -31.65608 -31.48513 -29.06579 -28.11122 -26.74806 -26.23750 -25.25964 -24.18512 -23.60817 -22.90438 -21.84962 -20.72172 -19.36390 -18.94818 -18.58249 -18.26340 -17.74491 -17.19780 -17.06685 -16.62784 -16.54929 -16.35420 -16.27889 -15.68838 -15.51929 -15.31286 -15.10322 -14.56582 -14.33781 -14.22246 -14.00602 -13.54778 -13.35068 -13.24114 -13.08535 -13.00338 -12.74400 -12.70303 -12.59343 -12.51393 -12.37188 -12.30045 -12.13158 -12.09697 -11.85919 -11.73321 -11.55803 -11.41646 -11.38710 -10.65594 -10.29158 -10.14557 -9.65950 -8.28642 -6.39302 0.35978 1.02594 1.38224 1.39058 1.52077 1.59516 1.95167 2.01612 2.31607 2.36772 2.74082 2.89323 3.06142 3.12365 3.46456 3.68592 3.84018 3.90913 3.95290 4.03421 4.03916 4.15831 4.33045 4.36366 4.39787 4.42714 4.56575 4.70596 4.73678 4.74999 4.76149 4.78582 4.85712 4.90970 5.04540 5.09864 5.14292 5.19731 5.29328 5.34429 5.41104 5.50404 5.62285 5.74050 5.86812 6.10742 6.72443 6.77786 7.30073 7.30873 7.36734 8.83501 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009601 B = 0.003405 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.525508 B = 8221.130633 C =10838.814203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.004 3.996 3 C -0.147 4.147 4 C 0.179 3.821 5 N -0.501 5.501 6 C 0.180 3.820 7 C 0.221 3.779 8 H 0.118 0.882 9 C 0.070 3.930 10 O -0.372 6.372 11 C 0.046 3.954 12 C 0.072 3.928 13 N -0.632 5.632 14 C 0.701 3.299 15 O -0.617 6.617 16 N -0.730 5.730 17 C 0.167 3.833 18 C 0.028 3.972 19 C -0.548 4.548 20 H 0.056 0.944 21 C 0.009 3.991 22 N -0.924 5.924 23 Si 0.966 3.034 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.275 1.275 27 N -0.366 5.366 28 O 0.076 5.924 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.039 0.961 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.132 0.868 37 H 0.051 0.949 38 H 0.147 0.853 39 H 0.053 0.947 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.404 0.596 43 H 0.037 0.963 44 H 0.039 0.961 45 H 0.008 0.992 46 H 0.010 0.990 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.788 -13.039 -10.539 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.016 4.016 3 C -0.205 4.205 4 C -0.041 4.041 5 N -0.236 5.236 6 C -0.093 4.093 7 C 0.116 3.884 8 H 0.136 0.864 9 C -0.009 4.009 10 O -0.289 6.289 11 C -0.031 4.031 12 C -0.049 4.049 13 N -0.372 5.372 14 C 0.403 3.597 15 O -0.496 6.496 16 N -0.386 5.386 17 C 0.042 3.958 18 C -0.010 4.010 19 C -0.586 4.586 20 H 0.074 0.926 21 C -0.190 4.190 22 N -0.564 5.564 23 Si 0.790 3.210 24 H -0.191 1.191 25 H -0.200 1.200 26 H -0.200 1.200 27 N -0.073 5.073 28 O 0.015 5.985 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.150 0.850 37 H 0.069 0.931 38 H 0.164 0.836 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.242 0.758 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.027 0.973 46 H 0.028 0.972 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.869 -13.009 -10.154 24.324 hybrid contribution 1.110 1.245 0.524 1.749 sum -16.759 -11.763 -9.631 22.627 Atomic orbital electron populations 1.21894 0.90233 1.03332 1.04578 1.20090 0.98380 0.95500 0.87663 1.21894 1.00652 0.93546 1.04454 1.29402 0.93807 0.91708 0.89207 1.71662 1.17343 1.15916 1.18647 1.24879 1.00243 0.97890 0.86303 1.19913 0.85790 0.88634 0.94079 0.86440 1.22832 0.92048 0.90996 0.95019 1.88000 1.50019 1.31822 1.59100 1.23223 0.89827 0.99061 0.90974 1.22724 0.94987 0.92077 0.95146 1.47373 1.35618 1.05202 1.49051 1.16059 0.81311 0.82335 0.80003 1.90889 1.51866 1.55960 1.50893 1.45389 1.29660 1.11752 1.51838 1.21025 0.96864 0.78842 0.99025 1.19098 0.91303 0.96435 0.94141 1.21435 1.12523 0.95073 1.29571 0.92602 1.25859 0.95971 1.02711 0.94454 1.70053 1.18671 1.36809 1.30848 0.85387 0.78255 0.79132 0.78227 1.19128 1.20047 1.19993 1.74433 1.12846 1.02065 1.18002 1.85141 1.54138 1.43063 1.16134 0.92050 0.87824 0.91857 0.85731 0.94203 0.87411 0.92405 0.84994 0.93083 0.83566 0.92829 0.87977 0.88195 0.75792 0.94421 0.94272 0.97333 0.97202 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.18 71.98 0.66 -1.01 16 2 C 0.00 0.07 3.39 -11.54 -0.04 0.03 16 3 C -0.15 -2.59 9.18 71.98 0.66 -1.93 16 4 C 0.18 5.04 7.02 88.38 0.62 5.66 16 5 N -0.50 -15.94 11.55 -303.20 -3.50 -19.44 16 6 C 0.18 5.90 4.65 138.46 0.64 6.54 16 7 C 0.22 5.94 3.60 44.08 0.16 6.10 16 8 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 9 C 0.07 1.49 6.25 71.94 0.45 1.94 16 10 O -0.37 -7.25 10.74 -148.98 -1.60 -8.85 16 11 C 0.05 0.75 6.99 72.08 0.50 1.26 16 12 C 0.07 1.41 6.57 86.35 0.57 1.98 16 13 N -0.63 -18.20 3.03 -816.34 -2.47 -20.67 16 14 C 0.70 26.61 8.21 179.05 1.47 28.08 16 15 O -0.62 -27.72 11.73 5.88 0.07 -27.65 16 16 N -0.73 -27.56 5.46 -478.56 -2.62 -30.18 16 17 C 0.17 7.61 5.62 86.38 0.49 8.10 16 18 C 0.03 1.43 5.09 29.85 0.15 1.58 16 19 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 20 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 21 C 0.01 0.51 5.46 84.66 0.46 0.98 16 22 N -0.92 -54.24 13.29 21.45 0.28 -53.95 16 23 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 27 N -0.37 -13.26 9.83 -60.32 -0.59 -13.85 16 28 O 0.08 2.53 11.28 84.78 0.96 3.48 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 38 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.10 1.86 5.78 -2.39 -0.01 1.85 16 42 H 0.40 12.99 6.03 -92.71 -0.56 12.43 16 43 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 44 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 46 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 47 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 Total: -1.00 -77.54 384.30 0.01 -77.53 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.42 Total: 19.22 kcal Atomic # 6 Polarization: 21.34 SS G_CDS: 7.03 Total: 28.36 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -8.90 Total: -138.09 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.58 Total: -33.02 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -77.54 0.01 -77.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345815047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.573 kcal (2) G-P(sol) polarization free energy of solvation -77.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds