Wall clock time and date at job start Tue Mar 31 2020 21:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53002 * 109.47645 * 174.99822 * 3 2 1 6 6 O 1.42904 * 109.46633 * 55.00442 * 5 3 2 7 7 C 1.42897 * 114.00022 * 180.02562 * 6 5 3 8 8 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 9 9 C 1.34777 * 120.00027 * 84.99801 * 8 3 2 10 10 O 1.21360 * 119.99995 * 359.97438 * 9 8 3 11 11 C 1.49344 * 120.00316 * 179.97438 * 9 8 3 12 12 O 1.21389 * 119.99469 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00614 * 179.97438 * 11 9 8 14 14 C 1.39928 * 120.00478 * 179.97438 * 13 11 9 15 15 C 1.40460 * 125.97740 * 359.72115 * 14 13 11 16 16 C 1.35217 * 107.86588 * 179.82571 * 15 14 13 17 17 C 1.50699 * 126.06068 * 180.17972 * 16 15 14 18 18 N 1.34980 * 107.87393 * 0.42743 * 16 15 14 19 19 C 1.46502 * 125.96924 * 179.72757 * 18 16 15 20 20 C 1.50698 * 109.47098 * 269.97465 * 19 18 16 21 21 H 1.08002 * 120.00576 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00213 * 180.02562 * 20 19 18 23 23 N 1.31508 * 120.00409 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99667 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47260 * 90.00269 * 24 22 20 26 26 H 1.48506 * 109.47263 * 210.00201 * 24 22 20 27 27 H 1.48498 * 109.47452 * 330.00004 * 24 22 20 28 28 N 1.31271 * 125.98166 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.08993 * 109.47269 * 175.00077 * 5 3 2 35 35 H 1.08994 * 109.47064 * 295.00931 * 5 3 2 36 36 H 1.08994 * 109.47395 * 59.99197 * 7 6 5 37 37 H 1.08999 * 109.47261 * 180.02562 * 7 6 5 38 38 H 1.09008 * 109.46702 * 299.99973 * 7 6 5 39 39 H 0.96998 * 120.00208 * 264.99507 * 8 3 2 40 40 H 0.97006 * 119.99476 * 0.02562 * 13 11 9 41 41 H 1.08002 * 126.06796 * 359.95856 * 15 14 13 42 42 H 1.09004 * 109.47316 * 270.29348 * 17 16 15 43 43 H 1.09001 * 109.47595 * 30.29216 * 17 16 15 44 44 H 1.09006 * 109.47274 * 150.29474 * 17 16 15 45 45 H 1.08996 * 109.47117 * 29.97576 * 19 18 16 46 46 H 1.09009 * 109.46958 * 149.97983 * 19 18 16 47 47 H 0.97004 * 120.00363 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4444 0.1258 6 8 4.1293 0.6405 -0.9122 7 6 5.5565 0.5744 -0.8850 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6644 -1.3669 10 8 -0.3401 2.6319 -0.4337 11 6 0.0401 3.3327 -2.6427 12 8 0.8157 3.3656 -3.5759 13 7 -1.1773 3.8991 -2.7580 14 6 -1.5472 4.5257 -3.9533 15 6 -0.7511 4.6422 -5.1046 16 6 -1.4672 5.3079 -6.0386 17 6 -1.0050 5.6541 -7.4305 18 7 -2.6675 5.6120 -5.5012 19 6 -3.7504 6.3379 -6.1695 20 6 -3.5954 7.8155 -5.9170 21 1 -2.7722 8.1778 -5.3190 22 6 -4.5043 8.7050 -6.4495 23 7 -4.3687 9.9945 -6.2296 24 14 -5.9285 8.0785 -7.4834 25 1 -7.0925 7.7987 -6.6048 26 1 -6.3019 9.1074 -8.4870 27 1 -5.5233 6.8314 -8.1803 28 7 -2.6968 5.1124 -4.1929 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.9355 2.4655 0.0367 35 1 3.8499 1.0377 1.0960 36 1 5.8826 0.1495 0.0643 37 1 5.9068 -0.0537 -1.7041 38 1 5.9688 1.5775 -0.9948 39 1 2.2718 2.1232 -1.9978 40 1 -1.7970 3.8731 -2.0121 41 1 0.2539 4.2650 -5.2235 42 1 -0.5126 6.6265 -7.4185 43 1 -0.3038 4.8962 -7.7796 44 1 -1.8643 5.6902 -8.1003 45 1 -3.7088 6.1462 -7.2416 46 1 -4.7100 6.0010 -5.7770 47 1 -5.0080 10.6204 -6.6046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349297704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:53 Heat of formation + Delta-G solvation = -32.640579 kcal Electronic energy + Delta-G solvation = -29071.088514 eV Core-core repulsion = 24870.481989 eV Total energy + Delta-G solvation = -4200.606525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20965 -40.47406 -39.05157 -38.20996 -36.05263 -35.01822 -33.33780 -32.58162 -31.61360 -31.18050 -29.79646 -27.51301 -26.76030 -26.49771 -25.28537 -23.81136 -22.57194 -21.50720 -20.78498 -19.91956 -19.66457 -17.98732 -17.45115 -17.14681 -16.75634 -16.35468 -16.16531 -16.02201 -15.68391 -15.39411 -15.06077 -14.91456 -14.41650 -14.23738 -13.88580 -13.44872 -13.33918 -13.22806 -13.05050 -12.64344 -12.63639 -12.47175 -12.36327 -12.08119 -11.92729 -11.73894 -11.65090 -11.50334 -11.36674 -11.22094 -11.03719 -10.80469 -10.64203 -10.19575 -10.03438 -10.02149 -9.63094 -9.57811 -9.43070 -8.79936 -8.09320 -7.60028 -6.27853 -4.31366 1.20231 2.03027 2.58133 2.98613 3.09466 3.15205 3.20332 3.23263 3.28129 3.62364 3.78814 4.19907 4.23101 4.36850 4.49758 4.76904 4.87301 4.88196 4.94032 5.00270 5.04962 5.17824 5.25100 5.26653 5.35034 5.54987 5.61596 5.74779 5.75790 5.88547 5.99674 6.02914 6.05585 6.21286 6.26624 6.32667 6.41730 6.53423 6.59608 6.62843 6.94196 7.23339 7.25972 7.37211 7.65338 7.78034 7.93861 8.28221 8.46716 8.77066 9.26892 10.84539 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.002102 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.514740 B =13318.829010 C =13841.392234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.148 3.852 4 H 0.106 0.894 5 C 0.051 3.949 6 O -0.386 6.386 7 C 0.031 3.969 8 N -0.691 5.691 9 C 0.517 3.483 10 O -0.512 6.512 11 C 0.511 3.489 12 O -0.497 6.497 13 N -0.599 5.599 14 C 0.262 3.738 15 C -0.286 4.286 16 C 0.097 3.903 17 C -0.085 4.085 18 N -0.313 5.313 19 C 0.231 3.769 20 C -0.542 4.542 21 H 0.081 0.919 22 C 0.079 3.921 23 N -0.885 5.885 24 Si 0.874 3.126 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.264 1.264 28 N -0.309 5.309 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.418 0.582 40 H 0.423 0.577 41 H 0.163 0.837 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.137 -19.883 10.174 28.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.043 3.957 4 H 0.124 0.876 5 C -0.027 4.027 6 O -0.305 6.305 7 C -0.065 4.065 8 N -0.345 5.345 9 C 0.297 3.703 10 O -0.387 6.387 11 C 0.291 3.709 12 O -0.369 6.369 13 N -0.248 5.248 14 C 0.010 3.990 15 C -0.316 4.316 16 C -0.034 4.034 17 C -0.144 4.144 18 N -0.095 5.095 19 C 0.112 3.888 20 C -0.580 4.580 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.522 5.522 24 Si 0.700 3.300 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.189 1.189 28 N -0.139 5.139 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.255 0.745 40 H 0.260 0.740 41 H 0.180 0.820 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.714 -19.433 10.445 27.086 hybrid contribution 0.096 -0.071 -0.477 0.492 sum 15.810 -19.504 9.968 27.013 Atomic orbital electron populations 1.21852 0.94809 1.01018 1.02959 1.21875 0.96797 0.95055 1.03136 1.21294 0.92382 0.94621 0.87362 0.87586 1.22877 0.92658 0.95446 0.91682 1.87903 1.20441 1.70526 1.51662 1.22771 0.80625 1.01216 1.01911 1.45708 1.15938 1.55349 1.17517 1.19819 0.82966 0.79634 0.87877 1.90796 1.50651 1.57721 1.39553 1.19977 0.82089 0.80263 0.88546 1.90719 1.50485 1.56521 1.39209 1.42006 1.16031 1.52618 1.14147 1.18881 0.94187 0.98732 0.87235 1.21255 1.03391 1.14711 0.92292 1.21072 0.86988 0.98172 0.97185 1.20370 1.01632 1.02537 0.89835 1.48586 1.12791 1.40589 1.07517 1.20050 0.84268 0.92602 0.91929 1.21154 1.14312 0.87680 1.34838 0.90076 1.24806 0.97355 0.94671 0.95687 1.69868 1.36666 1.01492 1.44194 0.86889 0.83203 0.79180 0.80717 1.19600 1.20524 1.18885 1.77334 1.19185 1.19605 0.97782 0.92021 0.93237 0.92660 0.90993 0.90641 0.92140 0.91341 0.93997 0.89376 0.93842 0.74493 0.73960 0.82006 0.89955 0.90550 0.91008 0.93063 0.93519 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.51 37.16 0.32 -1.08 16 2 C -0.13 -1.00 5.33 -26.73 -0.14 -1.14 16 3 C 0.15 1.12 2.66 -67.93 -0.18 0.94 16 4 H 0.11 0.82 7.58 -51.93 -0.39 0.43 16 5 C 0.05 0.29 5.68 37.16 0.21 0.50 16 6 O -0.39 -2.72 9.65 -35.23 -0.34 -3.06 16 7 C 0.03 0.15 11.01 101.05 1.11 1.26 16 8 N -0.69 -6.58 5.00 -54.27 -0.27 -6.85 16 9 C 0.52 6.27 6.45 -11.64 -0.08 6.20 16 10 O -0.51 -6.81 13.61 5.49 0.07 -6.73 16 11 C 0.51 7.50 7.85 -11.64 -0.09 7.41 16 12 O -0.50 -7.98 13.60 5.46 0.07 -7.90 16 13 N -0.60 -9.75 5.43 -11.58 -0.06 -9.81 16 14 C 0.26 5.26 8.10 -154.55 -1.25 4.01 16 15 C -0.29 -5.62 9.51 -39.82 -0.38 -6.00 16 16 C 0.10 1.95 6.92 -82.28 -0.57 1.38 16 17 C -0.09 -1.37 10.11 36.01 0.36 -1.01 16 18 N -0.31 -7.16 3.59 -58.33 -0.21 -7.37 16 19 C 0.23 5.48 5.06 -5.19 -0.03 5.46 16 20 C -0.54 -15.06 9.94 -34.44 -0.34 -15.40 16 21 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 22 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 23 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 24 Si 0.87 20.03 27.47 -169.99 -4.67 15.36 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 28 N -0.31 -7.01 12.60 31.41 0.40 -6.62 16 29 H 0.06 0.61 7.85 -51.93 -0.41 0.20 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.63 5.64 -51.93 -0.29 0.33 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.64 7.73 -51.93 -0.40 0.24 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.04 0.18 8.14 -51.92 -0.42 -0.24 16 39 H 0.42 3.88 7.85 -40.82 -0.32 3.56 16 40 H 0.42 6.21 8.29 -40.82 -0.34 5.87 16 41 H 0.16 3.00 5.91 -52.49 -0.31 2.69 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.12 7.07 -51.93 -0.37 0.75 16 45 H 0.05 1.13 6.10 -51.93 -0.32 0.81 16 46 H 0.05 1.11 7.57 -51.92 -0.39 0.71 16 47 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -33.03 389.52 -6.45 -39.48 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.94 Total: 8.41 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.15 Total: 4.63 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.63 Total: -56.05 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.19 Total: -17.70 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.67 Total: 15.36 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.03 -6.45 -39.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349297704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.839 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds