Wall clock time and date at job start Tue Mar 31 2020 21:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53002 * 109.47645 * 174.99822 * 3 2 1 6 6 O 1.42904 * 109.46633 * 55.00442 * 5 3 2 7 7 C 1.42897 * 114.00022 * 180.02562 * 6 5 3 8 8 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 9 9 C 1.34777 * 120.00027 * 84.99801 * 8 3 2 10 10 O 1.21360 * 119.99995 * 359.97438 * 9 8 3 11 11 C 1.49344 * 120.00316 * 179.97438 * 9 8 3 12 12 O 1.21389 * 119.99469 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00614 * 179.97438 * 11 9 8 14 14 C 1.39928 * 120.00478 * 179.97438 * 13 11 9 15 15 C 1.40460 * 125.97740 * 359.72115 * 14 13 11 16 16 C 1.35217 * 107.86588 * 179.82571 * 15 14 13 17 17 C 1.50699 * 126.06068 * 180.17972 * 16 15 14 18 18 N 1.34980 * 107.87393 * 0.42743 * 16 15 14 19 19 C 1.46502 * 125.96924 * 179.72757 * 18 16 15 20 20 C 1.50698 * 109.47098 * 269.97465 * 19 18 16 21 21 H 1.08002 * 120.00576 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00213 * 180.02562 * 20 19 18 23 23 N 1.31508 * 120.00409 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 119.99667 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47260 * 90.00269 * 24 22 20 26 26 H 1.48506 * 109.47263 * 210.00201 * 24 22 20 27 27 H 1.48498 * 109.47452 * 330.00004 * 24 22 20 28 28 N 1.31271 * 125.98166 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.08993 * 109.47269 * 175.00077 * 5 3 2 35 35 H 1.08994 * 109.47064 * 295.00931 * 5 3 2 36 36 H 1.08994 * 109.47395 * 59.99197 * 7 6 5 37 37 H 1.08999 * 109.47261 * 180.02562 * 7 6 5 38 38 H 1.09008 * 109.46702 * 299.99973 * 7 6 5 39 39 H 0.96998 * 120.00208 * 264.99507 * 8 3 2 40 40 H 0.97006 * 119.99476 * 0.02562 * 13 11 9 41 41 H 1.08002 * 126.06796 * 359.95856 * 15 14 13 42 42 H 1.09004 * 109.47316 * 270.29348 * 17 16 15 43 43 H 1.09001 * 109.47595 * 30.29216 * 17 16 15 44 44 H 1.09006 * 109.47274 * 150.29474 * 17 16 15 45 45 H 1.08996 * 109.47117 * 29.97576 * 19 18 16 46 46 H 1.09009 * 109.46958 * 149.97983 * 19 18 16 47 47 H 0.97004 * 120.00363 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4444 0.1258 6 8 4.1293 0.6405 -0.9122 7 6 5.5565 0.5744 -0.8850 8 7 1.6524 2.0975 -1.2518 9 6 0.4351 2.6644 -1.3669 10 8 -0.3401 2.6319 -0.4337 11 6 0.0401 3.3327 -2.6427 12 8 0.8157 3.3656 -3.5759 13 7 -1.1773 3.8991 -2.7580 14 6 -1.5472 4.5257 -3.9533 15 6 -0.7511 4.6422 -5.1046 16 6 -1.4672 5.3079 -6.0386 17 6 -1.0050 5.6541 -7.4305 18 7 -2.6675 5.6120 -5.5012 19 6 -3.7504 6.3379 -6.1695 20 6 -3.5954 7.8155 -5.9170 21 1 -2.7722 8.1778 -5.3190 22 6 -4.5043 8.7050 -6.4495 23 7 -4.3687 9.9945 -6.2296 24 14 -5.9285 8.0785 -7.4834 25 1 -7.0925 7.7987 -6.6048 26 1 -6.3019 9.1074 -8.4870 27 1 -5.5233 6.8314 -8.1803 28 7 -2.6968 5.1124 -4.1929 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.9355 2.4655 0.0367 35 1 3.8499 1.0377 1.0960 36 1 5.8826 0.1495 0.0643 37 1 5.9068 -0.0537 -1.7041 38 1 5.9688 1.5775 -0.9948 39 1 2.2718 2.1232 -1.9978 40 1 -1.7970 3.8731 -2.0121 41 1 0.2539 4.2650 -5.2235 42 1 -0.5126 6.6265 -7.4185 43 1 -0.3038 4.8962 -7.7796 44 1 -1.8643 5.6902 -8.1003 45 1 -3.7088 6.1462 -7.2416 46 1 -4.7100 6.0010 -5.7770 47 1 -5.0080 10.6204 -6.6046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349297704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:52 Heat of formation + Delta-G solvation = -57.250878 kcal Electronic energy + Delta-G solvation = -29072.155696 eV Core-core repulsion = 24870.481989 eV Total energy + Delta-G solvation = -4201.673708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.56121 -41.71781 -40.07486 -38.92088 -36.94969 -36.30662 -35.25569 -33.39984 -33.25603 -32.84432 -30.40073 -29.26354 -27.94597 -27.28654 -26.43137 -24.54942 -24.25464 -22.67974 -21.57774 -21.39115 -20.98805 -19.24547 -19.22208 -18.32251 -17.75144 -17.44849 -17.18359 -16.90791 -16.82859 -16.43838 -16.23990 -15.87537 -15.85817 -15.41525 -15.23031 -14.93201 -14.55490 -14.22223 -13.91306 -13.90056 -13.79777 -13.66336 -13.61358 -13.28001 -13.17419 -13.00570 -12.65486 -12.55730 -12.43525 -12.30308 -12.23904 -11.95820 -11.83130 -11.74132 -11.60506 -11.54011 -10.90331 -10.78057 -10.58937 -10.24783 -9.68877 -9.22263 -8.40520 -6.51862 0.04756 0.82944 1.04713 1.35418 1.38029 1.47077 1.69595 1.79274 2.23065 2.26521 2.53589 2.83946 2.92029 3.24909 3.68843 3.76708 3.94651 4.04811 4.21600 4.36111 4.42948 4.44078 4.49843 4.55579 4.62899 4.63096 4.63877 4.70615 4.75584 4.81168 4.88750 4.92987 4.97072 5.01740 5.04366 5.14696 5.17770 5.22551 5.31655 5.48242 5.73370 5.82179 5.95912 6.15915 6.21718 6.33100 6.51437 6.56145 6.80791 6.88440 7.11824 8.76005 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.002102 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.514740 B =13318.829010 C =13841.392234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.143 3.857 4 H 0.108 0.892 5 C 0.054 3.946 6 O -0.407 6.407 7 C 0.027 3.973 8 N -0.676 5.676 9 C 0.525 3.475 10 O -0.524 6.524 11 C 0.513 3.487 12 O -0.508 6.508 13 N -0.600 5.600 14 C 0.268 3.732 15 C -0.293 4.293 16 C 0.093 3.907 17 C -0.085 4.085 18 N -0.338 5.338 19 C 0.239 3.761 20 C -0.550 4.550 21 H 0.024 0.976 22 C 0.021 3.979 23 N -0.937 5.937 24 Si 0.951 3.049 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.232 1.232 28 N -0.350 5.350 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.420 0.580 40 H 0.429 0.571 41 H 0.175 0.825 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.049 0.951 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.980 -22.160 9.691 30.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.040 3.960 4 H 0.125 0.875 5 C -0.023 4.023 6 O -0.327 6.327 7 C -0.069 4.069 8 N -0.330 5.330 9 C 0.304 3.696 10 O -0.401 6.401 11 C 0.295 3.705 12 O -0.381 6.381 13 N -0.250 5.250 14 C 0.014 3.986 15 C -0.324 4.324 16 C -0.037 4.037 17 C -0.143 4.143 18 N -0.120 5.120 19 C 0.120 3.880 20 C -0.589 4.589 21 H 0.042 0.958 22 C -0.179 4.179 23 N -0.575 5.575 24 Si 0.772 3.228 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.155 1.155 28 N -0.181 5.181 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.258 0.742 40 H 0.267 0.733 41 H 0.192 0.808 42 H 0.098 0.902 43 H 0.130 0.870 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.067 0.933 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.618 -21.750 9.982 29.136 hybrid contribution 0.021 0.609 -0.202 0.642 sum 16.639 -21.141 9.781 28.627 Atomic orbital electron populations 1.21826 0.96192 1.01018 1.01496 1.21835 0.95383 0.95114 1.03881 1.21523 0.93992 0.94344 0.86118 0.87451 1.22891 0.90934 0.95907 0.92554 1.87869 1.21749 1.70787 1.52254 1.22897 0.79467 1.01707 1.02850 1.45758 1.14681 1.54094 1.18422 1.19315 0.83771 0.79940 0.86530 1.90802 1.51229 1.58562 1.39489 1.20528 0.81185 0.79429 0.89400 1.90693 1.50644 1.56777 1.40012 1.42127 1.16897 1.52719 1.13266 1.19198 0.93487 0.97437 0.88431 1.21487 1.03794 1.14956 0.92145 1.21814 0.85970 0.97003 0.98878 1.20541 1.02618 1.03505 0.87603 1.48507 1.13660 1.41913 1.07963 1.19845 0.84932 0.89858 0.93407 1.21231 1.12911 0.90451 1.34268 0.95762 1.25836 1.00537 0.94537 0.96968 1.70029 1.38314 1.03301 1.45846 0.85679 0.78482 0.79848 0.78789 1.19233 1.19921 1.15484 1.77240 1.20944 1.21470 0.98430 0.92642 0.92547 0.94883 0.88796 0.91256 0.91667 0.88985 0.92690 0.89019 0.93463 0.74188 0.73271 0.80798 0.90201 0.87013 0.90320 0.90414 0.93348 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.51 71.98 0.61 -2.02 16 2 C -0.12 -1.67 5.33 30.59 0.16 -1.50 16 3 C 0.14 1.91 2.66 44.99 0.12 2.03 16 4 H 0.11 1.47 7.58 -2.38 -0.02 1.45 16 5 C 0.05 0.49 5.68 71.98 0.41 0.90 16 6 O -0.41 -4.88 9.65 -148.98 -1.44 -6.31 16 7 C 0.03 0.19 11.01 113.37 1.25 1.44 16 8 N -0.68 -12.09 5.00 -443.96 -2.22 -14.31 16 9 C 0.53 12.45 6.45 87.24 0.56 13.01 16 10 O -0.52 -13.74 13.61 -3.28 -0.04 -13.78 16 11 C 0.51 14.92 7.85 87.24 0.69 15.60 16 12 O -0.51 -15.99 13.60 -3.37 -0.05 -16.03 16 13 N -0.60 -19.71 5.43 -308.90 -1.68 -21.39 16 14 C 0.27 10.89 8.10 133.40 1.08 11.97 16 15 C -0.29 -11.45 9.51 22.11 0.21 -11.23 16 16 C 0.09 3.73 6.92 41.38 0.29 4.01 16 17 C -0.08 -2.58 10.11 71.24 0.72 -1.85 16 18 N -0.34 -15.61 3.59 -338.45 -1.22 -16.83 16 19 C 0.24 11.32 5.06 85.63 0.43 11.75 16 20 C -0.55 -31.50 9.94 25.60 0.25 -31.25 16 21 H 0.02 1.61 8.06 -2.91 -0.02 1.59 16 22 C 0.02 1.18 5.47 84.66 0.46 1.64 16 23 N -0.94 -56.98 13.96 21.45 0.30 -56.68 16 24 Si 0.95 40.70 27.47 68.60 1.88 42.58 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.23 -8.68 6.54 99.48 0.65 -8.03 16 28 N -0.35 -16.28 12.60 -54.54 -0.69 -16.97 16 29 H 0.05 1.04 7.85 -2.39 -0.02 1.03 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.03 0.73 5.64 -2.38 -0.01 0.71 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.05 7.73 -2.39 -0.02 1.03 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 38 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 39 H 0.42 7.27 7.85 -92.71 -0.73 6.54 16 40 H 0.43 12.86 8.29 -92.70 -0.77 12.09 16 41 H 0.17 6.28 5.91 -2.91 -0.02 6.26 16 42 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 43 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.08 2.28 7.07 -2.38 -0.02 2.26 16 45 H 0.08 3.25 6.10 -2.39 -0.01 3.23 16 46 H 0.05 2.26 7.57 -2.38 -0.02 2.24 16 47 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -74.33 389.52 1.56 -72.77 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.54 Total: 32.46 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 7.25 Total: 14.49 kcal Atomic # 7 Polarization: -120.67 SS G_CDS: -5.50 Total: -126.18 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.53 Total: -36.13 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.88 Total: 42.58 kcal Total: -74.33 1.56 -72.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349297704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.514 kcal (2) G-P(sol) polarization free energy of solvation -74.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds