Wall clock time and date at job start Tue Mar 31 2020 21:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53011 * 109.46881 * 2 1 4 4 C 1.52998 * 109.47139 * 240.00563 * 2 1 3 5 5 C 1.50697 * 109.47295 * 59.99627 * 4 2 1 6 6 H 1.07992 * 120.00242 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00119 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00474 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99776 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47170 * 90.00208 * 9 7 5 11 11 H 1.48503 * 109.47334 * 210.00134 * 9 7 5 12 12 H 1.48502 * 109.47036 * 330.00356 * 9 7 5 13 13 C 1.53000 * 109.47559 * 120.00117 * 2 1 3 14 14 N 1.46498 * 109.46624 * 300.00358 * 13 2 1 15 15 C 1.34789 * 119.99725 * 179.97438 * 14 13 2 16 16 O 1.21281 * 119.99452 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00146 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.46850 * 60.00005 * 17 15 14 19 19 C 1.53011 * 109.46907 * 300.00425 * 17 15 14 20 20 N 1.46494 * 109.46923 * 180.02562 * 17 15 14 21 21 C 1.34954 * 126.03475 * 164.99905 * 20 17 15 22 22 C 1.35316 * 107.74368 * 179.73518 * 21 20 17 23 23 N 1.48018 * 126.03708 * 179.97438 * 22 21 20 24 24 O 1.21803 * 120.00197 * 359.97438 * 23 22 21 25 25 O 1.21795 * 120.00178 * 180.02562 * 23 22 21 26 26 C 1.39868 * 107.92272 * 0.02562 * 22 21 20 27 27 N 1.30837 * 108.20148 * 359.97438 * 26 22 21 28 28 H 1.08999 * 109.47556 * 299.99696 * 1 2 3 29 29 H 1.08998 * 109.47372 * 59.99874 * 1 2 3 30 30 H 1.09003 * 109.46725 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46845 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47220 * 300.00219 * 3 2 1 33 33 H 1.08997 * 109.46461 * 60.00248 * 3 2 1 34 34 H 1.09009 * 109.47310 * 179.97438 * 4 2 1 35 35 H 1.09003 * 109.47135 * 299.99532 * 4 2 1 36 36 H 0.96996 * 120.00097 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47215 * 180.02562 * 13 2 1 38 38 H 1.08996 * 109.46581 * 60.00116 * 13 2 1 39 39 H 0.96999 * 120.01085 * 0.02562 * 14 13 2 40 40 H 1.09006 * 109.46552 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.47602 * 300.00138 * 18 17 15 42 42 H 1.08999 * 109.46933 * 60.00662 * 18 17 15 43 43 H 1.09000 * 109.46647 * 299.99945 * 19 17 15 44 44 H 1.08998 * 109.47220 * 60.00061 * 19 17 15 45 45 H 1.08997 * 109.46461 * 180.02562 * 19 17 15 46 46 H 1.07999 * 126.12411 * 359.73472 * 21 20 17 47 47 H 1.08002 * 125.89970 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4820 -3.7320 8 7 1.4323 0.1383 -4.8058 9 14 2.9443 -2.0007 -3.9035 10 1 2.0858 -3.2116 -3.9484 11 1 3.7358 -1.9084 -5.1566 12 1 3.8651 -2.0895 -2.7418 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4453 15 6 1.8769 -0.4915 3.6695 16 8 2.5743 -1.4775 3.7807 17 6 1.3751 0.2192 4.9000 18 6 -0.1549 0.2202 4.8999 19 6 1.8860 1.6615 4.9000 20 7 1.8634 -0.4715 6.0961 21 6 1.8622 0.0202 7.3529 22 6 2.3885 -0.9248 8.1659 23 7 2.5776 -0.8074 9.6292 24 8 2.2464 0.2129 10.2063 25 8 3.0651 -1.7308 10.2563 26 6 2.7234 -2.0316 7.3790 27 7 2.4088 -1.7610 6.1382 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.1301 -0.7207 -1.2496 35 1 1.6767 -1.7488 -1.2494 36 1 1.6667 -0.1931 -5.6868 37 1 3.1301 -0.7208 1.2494 38 1 1.6768 -1.7489 1.2491 39 1 0.9936 0.7577 2.3565 40 1 -0.5179 0.7347 5.7898 41 1 -0.5179 0.7343 4.0100 42 1 -0.5189 -0.8072 4.8999 43 1 2.9760 1.6607 4.9000 44 1 1.5230 2.1756 4.0101 45 1 1.5234 2.1753 5.7903 46 1 1.5051 0.9935 7.6555 47 1 3.1645 -2.9511 7.7344 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359763548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:18 Heat of formation + Delta-G solvation = 18.553664 kcal Electronic energy + Delta-G solvation = -29756.771811 eV Core-core repulsion = 25558.385234 eV Total energy + Delta-G solvation = -4198.386576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.52785 -42.55923 -41.07754 -38.83181 -37.54427 -36.89182 -35.27447 -34.02660 -32.34102 -31.84379 -29.74070 -28.62351 -27.97848 -27.78033 -27.38474 -25.12223 -24.32743 -23.13483 -22.32861 -21.14468 -20.44968 -19.58877 -19.36441 -18.91647 -18.56939 -17.79003 -17.75143 -16.87841 -16.72087 -16.22673 -16.19238 -15.62425 -15.33742 -15.24983 -15.08642 -14.52100 -14.26920 -14.21258 -14.17573 -13.70385 -13.59522 -13.33277 -13.27672 -12.94985 -12.87370 -12.84873 -12.69307 -12.60736 -12.58445 -12.31384 -12.22281 -12.18169 -12.01597 -11.79794 -11.52783 -11.28371 -11.12781 -10.93888 -10.72462 -10.71728 -10.60467 -10.14332 -8.24310 -6.23887 -0.80945 0.15808 0.41896 1.08212 1.24906 1.32981 1.36846 1.43438 1.45343 1.83316 2.36469 3.01235 3.11351 3.23177 3.37714 3.40879 3.53501 3.82011 3.89541 3.96006 4.03859 4.14126 4.40385 4.47316 4.52261 4.55819 4.62047 4.68543 4.72274 4.76706 4.93975 4.96627 5.01091 5.04061 5.10114 5.21082 5.27603 5.31968 5.38810 5.40709 5.42598 5.55760 5.70159 5.76054 6.02232 6.35687 6.42354 6.61230 6.83408 7.10733 7.38972 8.90921 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028099 B = 0.002187 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.252305 B =12799.570068 C =13389.696372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.056 4.056 3 C -0.125 4.125 4 C -0.006 4.006 5 C -0.499 4.499 6 H 0.056 0.944 7 C 0.006 3.994 8 N -0.949 5.949 9 Si 0.930 3.070 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.254 1.254 13 C 0.142 3.858 14 N -0.700 5.700 15 C 0.502 3.498 16 O -0.542 6.542 17 C 0.165 3.835 18 C -0.161 4.161 19 C -0.166 4.166 20 N -0.334 5.334 21 C 0.177 3.823 22 C -0.210 4.210 23 N 0.076 4.924 24 O -0.173 6.173 25 O -0.206 6.206 26 C 0.091 3.909 27 N -0.256 5.256 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.012 0.988 35 H 0.010 0.990 36 H 0.262 0.738 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.415 0.585 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.248 0.752 47 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 5.754 25.368 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.057 4.057 3 C -0.182 4.182 4 C -0.043 4.043 5 C -0.537 4.537 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.591 5.591 9 Si 0.756 3.244 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.177 1.177 13 C 0.018 3.982 14 N -0.354 5.354 15 C 0.286 3.714 16 O -0.418 6.418 17 C 0.080 3.920 18 C -0.219 4.219 19 C -0.223 4.223 20 N -0.113 5.113 21 C 0.022 3.978 22 C -0.309 4.309 23 N 0.587 4.413 24 O -0.387 6.387 25 O -0.411 6.411 26 C -0.099 4.099 27 N -0.073 5.073 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.254 0.746 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.264 0.736 47 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.268 4.563 23.208 23.877 hybrid contribution 0.611 -0.589 0.187 0.869 sum -2.657 3.974 23.395 23.878 Atomic orbital electron populations 1.21729 0.93623 1.01281 1.01640 1.20544 0.96660 0.96219 0.92261 1.21727 1.00211 0.94639 1.01665 1.19585 0.95858 0.95468 0.93438 1.21360 1.30155 1.12276 0.89904 0.92569 1.25806 0.97452 0.99723 0.96082 1.70024 1.48089 1.42550 0.98406 0.85958 0.79951 0.80661 0.77839 1.19891 1.21595 1.17746 1.21264 0.98202 0.95535 0.83179 1.45804 1.53282 1.32258 1.04095 1.20462 0.81064 0.84806 0.85116 1.90867 1.37864 1.26641 1.86396 1.21306 0.98007 0.93409 0.79305 1.22447 0.87389 1.04413 1.07668 1.22514 1.02712 0.88834 1.08289 1.48975 1.44196 1.11688 1.06413 1.22802 0.92335 1.00031 0.82628 1.21173 1.26130 1.02060 0.81520 1.42628 0.96927 0.99495 1.02234 1.94501 1.53647 1.19489 1.71077 1.94561 1.46991 1.32785 1.66766 1.24503 0.97251 0.99457 0.88729 1.78496 1.15713 0.95630 1.17490 0.90569 0.93535 0.93897 0.93875 0.93537 0.90516 0.96960 0.97135 0.92899 0.92851 0.92846 0.74572 0.87061 0.86447 0.92589 0.91886 0.86212 0.86324 0.73607 0.76651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 8.05 71.98 0.58 -2.97 16 2 C -0.06 -1.75 0.54 -52.18 -0.03 -1.78 16 3 C -0.13 -3.53 8.05 71.99 0.58 -2.95 16 4 C -0.01 -0.24 3.11 29.85 0.09 -0.14 16 5 C -0.50 -25.79 8.20 25.60 0.21 -25.58 16 6 H 0.06 3.10 5.92 -2.91 -0.02 3.09 16 7 C 0.01 0.32 5.47 84.66 0.46 0.79 16 8 N -0.95 -56.95 13.96 21.45 0.30 -56.65 16 9 Si 0.93 43.43 27.47 68.60 1.88 45.31 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 13 C 0.14 3.91 4.57 86.38 0.39 4.31 16 14 N -0.70 -13.18 4.74 -463.05 -2.20 -15.37 16 15 C 0.50 10.65 6.53 87.65 0.57 11.23 16 16 O -0.54 -17.40 14.35 -3.03 -0.04 -17.44 16 17 C 0.16 1.91 1.08 2.86 0.00 1.91 16 18 C -0.16 -0.94 8.62 71.98 0.62 -0.32 16 19 C -0.17 -0.69 8.19 71.99 0.59 -0.10 16 20 N -0.33 -5.35 3.42 -311.24 -1.06 -6.41 16 21 C 0.18 2.07 10.28 83.54 0.86 2.93 16 22 C -0.21 -3.83 7.11 36.10 0.26 -3.58 16 23 N 0.08 1.68 4.45 -47.13 -0.21 1.47 16 24 O -0.17 -3.73 19.02 18.88 0.36 -3.37 16 25 O -0.21 -5.23 19.05 18.89 0.36 -4.87 16 26 C 0.09 1.85 11.75 85.24 1.00 2.86 16 27 N -0.26 -6.17 9.92 -57.02 -0.57 -6.73 16 28 H 0.08 1.42 6.86 -2.39 -0.02 1.41 16 29 H 0.05 1.60 6.62 -2.39 -0.02 1.58 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.59 6.62 -2.39 -0.02 1.57 16 33 H 0.08 1.41 6.86 -2.39 -0.02 1.40 16 34 H 0.01 0.53 7.20 -2.38 -0.02 0.51 16 35 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 36 H 0.26 14.94 8.31 -92.71 -0.77 14.16 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.42 4.88 5.00 -92.71 -0.46 4.42 16 40 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16 41 H 0.12 0.17 7.56 -2.39 -0.02 0.15 16 42 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.12 0.03 7.57 -2.39 -0.02 0.01 16 45 H 0.12 -0.31 7.37 -2.39 -0.02 -0.33 16 46 H 0.25 0.37 7.55 -2.91 -0.02 0.35 16 47 H 0.22 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -79.02 384.72 5.50 -73.52 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 0.48 Total: 3.95 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 6.19 Total: -13.40 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -3.74 Total: -83.70 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: 0.68 Total: -25.68 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.31 kcal Total: -79.02 5.50 -73.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359763548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.075 kcal (2) G-P(sol) polarization free energy of solvation -79.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds