Wall clock time and date at job start Tue Mar 31 2020 21:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47174 * 2 1 4 4 C 1.53006 * 109.47317 * 119.99882 * 2 1 3 5 5 C 1.52999 * 109.46770 * 65.70000 * 4 2 1 6 6 H 1.08996 * 109.47308 * 304.73544 * 5 4 2 7 7 C 1.53000 * 109.46960 * 184.73700 * 5 4 2 8 8 N 1.46501 * 109.47421 * 175.00056 * 7 5 4 9 9 C 1.34771 * 119.99937 * 179.97438 * 8 7 5 10 10 O 1.21590 * 120.00624 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00038 * 179.97438 * 9 8 7 12 12 C 1.40187 * 120.00463 * 180.02562 * 11 9 8 13 13 C 1.40406 * 125.97266 * 359.71653 * 12 11 9 14 14 C 1.35244 * 107.87035 * 179.82899 * 13 12 11 15 15 N 1.34967 * 107.85632 * 0.42847 * 14 13 12 16 16 C 1.46501 * 125.97632 * 179.70299 * 15 14 13 17 17 C 1.50700 * 109.47063 * 125.00503 * 16 15 14 18 18 H 1.08004 * 120.00056 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00245 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99528 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00215 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47115 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47257 * 119.99708 * 21 19 17 24 24 H 1.48500 * 109.47105 * 240.00023 * 21 19 17 25 25 N 1.31213 * 125.97753 * 180.02562 * 12 11 9 26 26 C 1.50694 * 109.47217 * 64.73695 * 5 4 2 27 27 O 1.20825 * 120.00509 * 37.10770 * 26 5 4 28 28 O 1.34233 * 120.00057 * 217.10498 * 26 5 4 29 29 H 1.09007 * 109.47071 * 299.99779 * 1 2 3 30 30 H 1.08996 * 109.47338 * 59.99950 * 1 2 3 31 31 H 1.09006 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47155 * 239.99983 * 2 1 3 33 33 H 1.08994 * 109.47142 * 178.52726 * 3 2 1 34 34 H 1.08999 * 109.46788 * 298.52306 * 3 2 1 35 35 H 1.09003 * 109.47267 * 58.52456 * 3 2 1 36 36 H 1.08993 * 109.46901 * 185.69746 * 4 2 1 37 37 H 1.08998 * 109.47016 * 305.69674 * 4 2 1 38 38 H 1.09004 * 109.46981 * 295.00159 * 7 5 4 39 39 H 1.09008 * 109.47145 * 54.99772 * 7 5 4 40 40 H 0.97001 * 119.99637 * 359.97438 * 8 7 5 41 41 H 0.97007 * 120.00024 * 0.02562 * 11 9 8 42 42 H 1.07998 * 126.06481 * 359.97438 * 13 12 11 43 43 H 1.07998 * 126.07217 * 180.15862 * 14 13 12 44 44 H 1.09005 * 109.47342 * 245.00205 * 16 15 14 45 45 H 1.09000 * 109.47072 * 5.00165 * 16 15 14 46 46 H 0.96998 * 119.99885 * 180.02562 * 20 19 17 47 47 H 0.96700 * 117.00160 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6504 -2.1991 1.1797 6 1 0.5724 -2.2846 1.0426 7 6 2.0558 -2.8953 2.4804 8 7 1.5772 -4.2798 2.4632 9 6 1.8204 -5.0899 3.5123 10 8 2.4367 -4.6718 4.4735 11 7 1.3796 -6.3635 3.4967 12 6 1.6321 -7.2061 4.5882 13 6 2.3328 -6.8581 5.7541 14 6 2.3568 -7.9417 6.5630 15 7 1.7062 -8.9426 5.9334 16 6 1.5029 -10.2974 6.4524 17 6 0.0315 -10.6230 6.4440 18 1 -0.6809 -9.8938 6.0873 19 6 -0.4053 -11.8517 6.8917 20 7 0.4623 -12.7398 7.3256 21 14 -2.2292 -12.2550 6.8819 22 1 -2.9897 -11.0954 6.3507 23 1 -2.4693 -13.4411 6.0214 24 1 -2.6786 -12.5488 8.2665 25 7 1.2599 -8.4597 4.6966 26 6 2.3575 -2.8510 0.0195 27 8 3.4896 -2.5306 -0.2553 28 8 1.7296 -3.7877 -0.7087 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1296 1.4426 0.0264 34 1 1.6984 1.9486 -0.9029 35 1 1.6552 1.9640 0.8765 36 1 3.1252 -0.6337 1.3017 37 1 1.5958 -0.2697 2.1363 38 1 3.1419 -2.8874 2.5734 39 1 1.6149 -2.3688 3.3270 40 1 1.0852 -4.6133 1.6966 41 1 0.8876 -6.6971 2.7301 42 1 2.7723 -5.8951 5.9681 43 1 2.8188 -7.9976 7.5376 44 1 2.0365 -11.0110 5.8245 45 1 1.8823 -10.3564 7.4725 46 1 0.1551 -13.6044 7.6403 47 1 2.2237 -4.1770 -1.4432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424382631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:10 Heat of formation + Delta-G solvation = -57.224716 kcal Electronic energy + Delta-G solvation = -28602.380126 eV Core-core repulsion = 24400.707553 eV Total energy + Delta-G solvation = -4201.672573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.14164 -40.63200 -39.51526 -37.63339 -36.39475 -35.42883 -34.63022 -33.35967 -32.06364 -30.72386 -29.27486 -27.66102 -26.95585 -26.18286 -25.03107 -23.10223 -21.87319 -21.19776 -20.49222 -20.14700 -19.79320 -18.71798 -18.02734 -17.25531 -16.87359 -16.56548 -16.11544 -15.93730 -15.57514 -15.27892 -14.87487 -14.63758 -14.32500 -14.10509 -14.07246 -14.02991 -13.65583 -12.99119 -12.84278 -12.74162 -12.66959 -12.38176 -12.28313 -12.20261 -12.08837 -11.91215 -11.75938 -11.30569 -11.18587 -11.09685 -11.05099 -10.87784 -10.83970 -10.42258 -10.25712 -10.10188 -9.69765 -9.48503 -9.34367 -8.62981 -8.09238 -7.40728 -6.23583 -4.28417 1.75640 2.30084 2.54055 2.66193 3.10583 3.22527 3.30023 3.36241 3.54464 3.83981 3.98677 4.13803 4.29475 4.37239 4.38453 4.53465 4.57794 4.73698 4.91368 5.11592 5.12185 5.17153 5.20811 5.31086 5.36043 5.39631 5.46126 5.53072 5.55445 5.70728 5.81310 5.83115 5.86206 6.08064 6.11618 6.25880 6.53849 6.56300 6.87494 7.00232 7.10542 7.45198 7.49688 7.70537 7.81901 7.96389 8.07924 8.54828 8.67375 8.82154 9.37150 10.85144 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021823 B = 0.001862 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.760128 B =15030.718295 C =15397.288688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.104 4.104 5 C -0.094 4.094 6 H 0.114 0.886 7 C 0.150 3.850 8 N -0.750 5.750 9 C 0.715 3.285 10 O -0.565 6.565 11 N -0.642 5.642 12 C 0.275 3.725 13 C -0.286 4.286 14 C 0.051 3.949 15 N -0.320 5.320 16 C 0.258 3.742 17 C -0.527 4.527 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.307 5.307 26 C 0.483 3.517 27 O -0.506 6.506 28 O -0.517 6.517 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.400 0.600 41 H 0.407 0.593 42 H 0.161 0.839 43 H 0.168 0.832 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.266 0.734 47 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 25.133 -15.662 29.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.119 4.119 3 C -0.203 4.203 4 C -0.142 4.142 5 C -0.114 4.114 6 H 0.132 0.868 7 C 0.025 3.975 8 N -0.408 5.408 9 C 0.414 3.586 10 O -0.440 6.440 11 N -0.292 5.292 12 C 0.021 3.979 13 C -0.318 4.318 14 C -0.099 4.099 15 N -0.102 5.102 16 C 0.140 3.860 17 C -0.565 4.565 18 H 0.088 0.912 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.138 5.138 26 C 0.325 3.675 27 O -0.393 6.393 28 O -0.330 6.330 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.235 0.765 41 H 0.242 0.758 42 H 0.178 0.822 43 H 0.185 0.815 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 1.650 24.516 -14.954 28.764 hybrid contribution -0.717 -0.428 -0.903 1.230 sum 0.933 24.088 -15.858 28.855 Atomic orbital electron populations 1.21959 0.94852 1.02024 1.02248 1.21162 0.96073 0.96863 0.97763 1.21803 1.01286 0.95291 1.01959 1.21641 1.03202 0.89908 0.99423 1.21461 1.02707 0.96520 0.90690 0.86833 1.21166 1.00878 0.80321 0.95119 1.45062 1.62630 1.12274 1.20841 1.15551 0.79893 0.80074 0.83081 1.90880 1.44876 1.74642 1.33630 1.41349 1.58761 1.09509 1.19580 1.18773 1.00119 0.90144 0.88874 1.21509 1.13624 1.01649 0.94984 1.22556 0.99164 0.88722 0.99441 1.49053 1.38600 1.11949 1.10605 1.19743 0.98896 0.72715 0.94599 1.21306 0.91171 1.00753 1.43317 0.91242 1.24951 0.98781 0.95684 0.94739 1.69930 1.34119 1.06873 1.42444 0.86274 0.84065 0.78425 0.77740 1.19578 1.20725 1.20785 1.77323 1.24970 1.08277 1.03258 1.23362 0.84992 0.76501 0.82674 1.90738 1.19197 1.61136 1.68275 1.84526 1.50534 1.52575 1.45325 0.92154 0.92522 0.92407 0.91488 0.92396 0.92595 0.92355 0.89691 0.89361 0.90275 0.89129 0.76518 0.75827 0.82188 0.81517 0.93747 0.92520 0.92405 0.72836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 8.97 37.16 0.33 -0.35 16 2 C -0.10 -0.53 2.81 -90.62 -0.25 -0.79 16 3 C -0.15 -0.72 9.19 37.16 0.34 -0.38 16 4 C -0.10 -0.56 3.92 -26.73 -0.10 -0.66 16 5 C -0.09 -0.56 2.20 -91.77 -0.20 -0.77 16 6 H 0.11 0.51 6.38 -51.93 -0.33 0.18 16 7 C 0.15 1.22 5.05 -4.04 -0.02 1.20 16 8 N -0.75 -7.27 5.35 -65.22 -0.35 -7.62 16 9 C 0.71 10.38 8.53 -86.92 -0.74 9.64 16 10 O -0.57 -10.07 13.47 5.29 0.07 -9.99 16 11 N -0.64 -9.97 5.45 -15.51 -0.08 -10.05 16 12 C 0.27 5.56 8.11 -154.37 -1.25 4.31 16 13 C -0.29 -5.75 9.61 -39.83 -0.38 -6.14 16 14 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 16 C 0.26 6.58 6.26 -5.19 -0.03 6.55 16 17 C -0.53 -14.68 9.24 -34.44 -0.32 -15.00 16 18 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.90 -25.34 13.29 55.43 0.74 -24.61 16 21 Si 0.91 21.35 29.54 -169.99 -5.02 16.32 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 N -0.31 -7.10 12.42 31.44 0.39 -6.71 16 26 C 0.48 3.71 5.78 36.00 0.21 3.92 16 27 O -0.51 -5.51 16.90 -18.75 -0.32 -5.83 16 28 O -0.52 -2.87 13.08 -39.27 -0.51 -3.38 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.25 6.49 -51.93 -0.34 -0.09 16 32 H 0.07 0.44 7.13 -51.93 -0.37 0.07 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.56 7.70 -51.93 -0.40 0.16 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.40 2.96 7.93 -40.82 -0.32 2.64 16 41 H 0.41 5.10 8.84 -40.82 -0.36 4.74 16 42 H 0.16 3.15 5.91 -52.49 -0.31 2.84 16 43 H 0.17 2.75 8.06 -52.49 -0.42 2.32 16 44 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 46 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 47 H 0.41 0.96 9.10 45.56 0.41 1.37 16 LS Contribution 396.06 15.07 5.97 5.97 Total: -1.00 -35.49 396.06 -8.28 -43.77 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.21 Total: 5.89 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -2.72 Total: 3.95 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.46 Total: -56.70 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.76 Total: -19.20 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.49 -8.28 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424382631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.458 kcal (2) G-P(sol) polarization free energy of solvation -35.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds