Wall clock time and date at job start Tue Mar 31 2020 21:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47174 * 2 1 4 4 C 1.53006 * 109.47317 * 119.99882 * 2 1 3 5 5 C 1.52999 * 109.46770 * 65.70000 * 4 2 1 6 6 H 1.08996 * 109.47308 * 304.73544 * 5 4 2 7 7 C 1.53000 * 109.46960 * 184.73700 * 5 4 2 8 8 N 1.46501 * 109.47421 * 175.00056 * 7 5 4 9 9 C 1.34771 * 119.99937 * 179.97438 * 8 7 5 10 10 O 1.21590 * 120.00624 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00038 * 179.97438 * 9 8 7 12 12 C 1.40187 * 120.00463 * 180.02562 * 11 9 8 13 13 C 1.40406 * 125.97266 * 359.71653 * 12 11 9 14 14 C 1.35244 * 107.87035 * 179.82899 * 13 12 11 15 15 N 1.34967 * 107.85632 * 0.42847 * 14 13 12 16 16 C 1.46501 * 125.97632 * 179.70299 * 15 14 13 17 17 C 1.50700 * 109.47063 * 125.00503 * 16 15 14 18 18 H 1.08004 * 120.00056 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00245 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99528 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00215 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47115 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47257 * 119.99708 * 21 19 17 24 24 H 1.48500 * 109.47105 * 240.00023 * 21 19 17 25 25 N 1.31213 * 125.97753 * 180.02562 * 12 11 9 26 26 C 1.50694 * 109.47217 * 64.73695 * 5 4 2 27 27 O 1.20825 * 120.00509 * 37.10770 * 26 5 4 28 28 O 1.34233 * 120.00057 * 217.10498 * 26 5 4 29 29 H 1.09007 * 109.47071 * 299.99779 * 1 2 3 30 30 H 1.08996 * 109.47338 * 59.99950 * 1 2 3 31 31 H 1.09006 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47155 * 239.99983 * 2 1 3 33 33 H 1.08994 * 109.47142 * 178.52726 * 3 2 1 34 34 H 1.08999 * 109.46788 * 298.52306 * 3 2 1 35 35 H 1.09003 * 109.47267 * 58.52456 * 3 2 1 36 36 H 1.08993 * 109.46901 * 185.69746 * 4 2 1 37 37 H 1.08998 * 109.47016 * 305.69674 * 4 2 1 38 38 H 1.09004 * 109.46981 * 295.00159 * 7 5 4 39 39 H 1.09008 * 109.47145 * 54.99772 * 7 5 4 40 40 H 0.97001 * 119.99637 * 359.97438 * 8 7 5 41 41 H 0.97007 * 120.00024 * 0.02562 * 11 9 8 42 42 H 1.07998 * 126.06481 * 359.97438 * 13 12 11 43 43 H 1.07998 * 126.07217 * 180.15862 * 14 13 12 44 44 H 1.09005 * 109.47342 * 245.00205 * 16 15 14 45 45 H 1.09000 * 109.47072 * 5.00165 * 16 15 14 46 46 H 0.96998 * 119.99885 * 180.02562 * 20 19 17 47 47 H 0.96700 * 117.00160 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6504 -2.1991 1.1797 6 1 0.5724 -2.2846 1.0426 7 6 2.0558 -2.8953 2.4804 8 7 1.5772 -4.2798 2.4632 9 6 1.8204 -5.0899 3.5123 10 8 2.4367 -4.6718 4.4735 11 7 1.3796 -6.3635 3.4967 12 6 1.6321 -7.2061 4.5882 13 6 2.3328 -6.8581 5.7541 14 6 2.3568 -7.9417 6.5630 15 7 1.7062 -8.9426 5.9334 16 6 1.5029 -10.2974 6.4524 17 6 0.0315 -10.6230 6.4440 18 1 -0.6809 -9.8938 6.0873 19 6 -0.4053 -11.8517 6.8917 20 7 0.4623 -12.7398 7.3256 21 14 -2.2292 -12.2550 6.8819 22 1 -2.9897 -11.0954 6.3507 23 1 -2.4693 -13.4411 6.0214 24 1 -2.6786 -12.5488 8.2665 25 7 1.2599 -8.4597 4.6966 26 6 2.3575 -2.8510 0.0195 27 8 3.4896 -2.5306 -0.2553 28 8 1.7296 -3.7877 -0.7087 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1296 1.4426 0.0264 34 1 1.6984 1.9486 -0.9029 35 1 1.6552 1.9640 0.8765 36 1 3.1252 -0.6337 1.3017 37 1 1.5958 -0.2697 2.1363 38 1 3.1419 -2.8874 2.5734 39 1 1.6149 -2.3688 3.3270 40 1 1.0852 -4.6133 1.6966 41 1 0.8876 -6.6971 2.7301 42 1 2.7723 -5.8951 5.9681 43 1 2.8188 -7.9976 7.5376 44 1 2.0365 -11.0110 5.8245 45 1 1.8823 -10.3564 7.4725 46 1 0.1551 -13.6044 7.6403 47 1 2.2237 -4.1770 -1.4432 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424382631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:09 Heat of formation + Delta-G solvation = -81.734136 kcal Electronic energy + Delta-G solvation = -28603.442934 eV Core-core repulsion = 24400.707553 eV Total energy + Delta-G solvation = -4202.735382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.24155 -41.68445 -40.76563 -38.14215 -37.01245 -36.41499 -35.93036 -35.25828 -33.11415 -32.19801 -30.91145 -28.61905 -28.01012 -27.08089 -25.69654 -24.90027 -23.10564 -22.00789 -21.80352 -21.26200 -20.60967 -19.42125 -19.07797 -18.68118 -18.24651 -17.83919 -17.28562 -16.80414 -16.67290 -16.46411 -16.03180 -15.79757 -15.55514 -15.41642 -14.79529 -14.73237 -14.50500 -14.40131 -14.20133 -13.78820 -13.74025 -13.53648 -13.20971 -13.05614 -12.92583 -12.82070 -12.72122 -12.55605 -12.47818 -12.29353 -12.05165 -11.78077 -11.64292 -11.61811 -11.51805 -11.41887 -11.36988 -11.13309 -10.71234 -10.30631 -9.71483 -9.04758 -8.31624 -6.45679 1.06673 1.11319 1.15575 1.38363 1.39706 1.52869 1.70227 2.05242 2.09733 2.36968 2.40556 2.99889 3.07201 3.46437 3.69717 3.94084 3.98617 4.07393 4.13475 4.29194 4.29838 4.45659 4.59016 4.64549 4.76377 4.79792 4.84741 4.90266 4.92033 4.96362 5.02053 5.03313 5.07807 5.10750 5.14578 5.31585 5.36348 5.44395 5.50609 5.58347 5.62170 5.75359 5.87085 5.97988 6.30848 6.64454 6.73332 6.95289 7.14378 7.24298 7.38915 8.76015 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021823 B = 0.001862 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.760128 B =15030.718295 C =15397.288688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.084 4.084 6 H 0.137 0.863 7 C 0.149 3.851 8 N -0.728 5.728 9 C 0.714 3.286 10 O -0.598 6.598 11 N -0.636 5.636 12 C 0.284 3.716 13 C -0.293 4.293 14 C 0.056 3.944 15 N -0.345 5.345 16 C 0.272 3.728 17 C -0.546 4.546 18 H 0.053 0.947 19 C 0.017 3.983 20 N -0.921 5.921 21 Si 0.973 3.027 22 H -0.274 1.274 23 H -0.274 1.274 24 H -0.271 1.271 25 N -0.347 5.347 26 C 0.484 3.516 27 O -0.543 6.543 28 O -0.511 6.511 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.414 0.586 41 H 0.421 0.579 42 H 0.167 0.833 43 H 0.201 0.799 44 H 0.021 0.979 45 H 0.059 0.941 46 H 0.272 0.728 47 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 26.310 -16.065 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.140 4.140 5 C -0.104 4.104 6 H 0.154 0.846 7 C 0.025 3.975 8 N -0.385 5.385 9 C 0.413 3.587 10 O -0.475 6.475 11 N -0.287 5.287 12 C 0.028 3.972 13 C -0.324 4.324 14 C -0.092 4.092 15 N -0.127 5.127 16 C 0.153 3.847 17 C -0.584 4.584 18 H 0.071 0.929 19 C -0.183 4.183 20 N -0.560 5.560 21 Si 0.797 3.203 22 H -0.198 1.198 23 H -0.199 1.199 24 H -0.196 1.196 25 N -0.178 5.178 26 C 0.327 3.673 27 O -0.433 6.433 28 O -0.325 6.325 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.252 0.748 41 H 0.258 0.742 42 H 0.185 0.815 43 H 0.218 0.782 44 H 0.039 0.961 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 0.120 25.715 -15.426 29.987 hybrid contribution -0.187 -0.683 -0.874 1.125 sum -0.066 25.032 -16.300 29.872 Atomic orbital electron populations 1.21952 0.93861 1.02439 1.02675 1.21124 0.96823 0.96772 0.96934 1.21807 1.00799 0.95257 1.02509 1.21650 1.02456 0.89574 1.00328 1.21458 1.03723 0.96356 0.88826 0.84562 1.21281 1.00043 0.79395 0.96783 1.44931 1.61539 1.12274 1.19801 1.15711 0.79500 0.79849 0.83653 1.90851 1.46308 1.75125 1.35241 1.41353 1.58960 1.09480 1.18935 1.19072 0.98486 0.89707 0.89893 1.21689 1.13784 1.01825 0.95080 1.23157 0.97822 0.87750 1.00491 1.48813 1.40529 1.11843 1.11496 1.19342 0.97479 0.73738 0.94128 1.21438 0.92105 1.00954 1.43906 0.92885 1.25751 1.03151 0.95335 0.94061 1.70005 1.36003 1.07296 1.42675 0.85282 0.78693 0.78065 0.78255 1.19833 1.19900 1.19578 1.77242 1.26981 1.09792 1.03814 1.23680 0.84465 0.76268 0.82854 1.90732 1.20858 1.62350 1.69398 1.84494 1.50428 1.51846 1.45700 0.91360 0.92519 0.91968 0.93062 0.93227 0.92377 0.91461 0.91200 0.87519 0.91893 0.88039 0.74845 0.74177 0.81528 0.78247 0.96098 0.92344 0.91882 0.71161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.97 71.98 0.65 -0.37 16 2 C -0.10 -0.90 2.81 -10.79 -0.03 -0.93 16 3 C -0.15 -1.28 9.19 71.98 0.66 -0.62 16 4 C -0.10 -0.95 3.92 30.60 0.12 -0.83 16 5 C -0.08 -0.84 2.20 -11.54 -0.03 -0.87 16 6 H 0.14 0.78 6.38 -2.39 -0.02 0.77 16 7 C 0.15 2.16 5.05 86.38 0.44 2.60 16 8 N -0.73 -12.63 5.35 -478.52 -2.56 -15.19 16 9 C 0.71 19.68 8.53 179.06 1.53 21.21 16 10 O -0.60 -20.65 13.47 -4.00 -0.05 -20.71 16 11 N -0.64 -18.99 5.45 -321.24 -1.75 -20.74 16 12 C 0.28 11.37 8.11 133.32 1.08 12.45 16 13 C -0.29 -11.56 9.61 22.11 0.21 -11.35 16 14 C 0.06 2.24 11.44 83.52 0.96 3.19 16 15 N -0.34 -16.28 3.67 -351.83 -1.29 -17.57 16 16 C 0.27 14.16 6.26 85.63 0.54 14.70 16 17 C -0.55 -30.82 9.24 25.60 0.24 -30.58 16 18 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 19 C 0.02 0.95 5.46 84.65 0.46 1.41 16 20 N -0.92 -52.18 13.29 21.45 0.28 -51.90 16 21 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 25 N -0.35 -16.17 12.42 -54.44 -0.68 -16.84 16 26 C 0.48 6.79 5.78 71.23 0.41 7.20 16 27 O -0.54 -11.66 16.90 21.97 0.37 -11.29 16 28 O -0.51 -4.65 13.08 -51.45 -0.67 -5.32 16 29 H 0.07 0.36 8.14 -2.38 -0.02 0.35 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.36 6.49 -2.38 -0.02 0.34 16 32 H 0.05 0.64 7.13 -2.39 -0.02 0.62 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.89 7.70 -2.39 -0.02 0.87 16 37 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.41 5.04 7.93 -92.71 -0.73 4.30 16 41 H 0.42 9.94 8.84 -92.70 -0.82 9.12 16 42 H 0.17 6.41 5.91 -2.91 -0.02 6.40 16 43 H 0.20 6.28 8.06 -2.91 -0.02 6.25 16 44 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 46 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 47 H 0.43 1.26 9.10 -74.06 -0.67 0.59 16 Total: -1.00 -76.81 396.06 1.70 -75.10 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -1.20 Total: 21.72 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 7.23 Total: 17.22 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -6.00 Total: -122.25 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -0.36 Total: -37.32 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -76.81 1.70 -75.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424382631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.633 kcal (2) G-P(sol) polarization free energy of solvation -76.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds