Wall clock time and date at job start Tue Mar 31 2020 21:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47398 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46974 * 120.00544 * 9 7 5 12 12 H 1.48508 * 109.47010 * 240.00184 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21363 * 120.00411 * 359.72017 * 14 13 3 16 16 C 1.49344 * 119.99833 * 179.72288 * 14 13 3 17 17 O 1.21393 * 119.99777 * 0.02562 * 16 14 13 18 18 N 1.34773 * 120.00203 * 179.97438 * 16 14 13 19 19 C 1.39927 * 120.00263 * 180.02562 * 18 16 14 20 20 C 1.40461 * 125.97999 * 0.02562 * 19 18 16 21 21 C 1.35212 * 107.86983 * 180.02562 * 20 19 18 22 22 N 1.34994 * 107.87675 * 359.97438 * 21 20 19 23 23 C 1.46499 * 125.97271 * 179.97438 * 22 21 20 24 24 H 1.08992 * 109.46807 * 205.00223 * 23 22 21 25 25 C 1.53003 * 109.47121 * 325.00096 * 23 22 21 26 26 C 1.53000 * 109.47146 * 85.00102 * 23 22 21 27 27 O 1.42895 * 109.47252 * 174.99816 * 26 23 22 28 28 C 1.42897 * 114.00122 * 179.97438 * 27 26 23 29 29 N 1.31276 * 125.98454 * 179.69127 * 19 18 16 30 30 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 31 31 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 33 33 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 34 34 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 35 35 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 36 36 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 37 37 H 0.97000 * 120.00112 * 0.02562 * 18 16 14 38 38 H 1.08001 * 126.06917 * 0.02562 * 20 19 18 39 39 H 1.08002 * 126.06428 * 179.97438 * 21 20 19 40 40 H 1.09007 * 109.46771 * 60.00208 * 25 23 22 41 41 H 1.09000 * 109.47019 * 179.97438 * 25 23 22 42 42 H 1.08995 * 109.47030 * 300.00101 * 25 23 22 43 43 H 1.08999 * 109.47334 * 295.00569 * 26 23 22 44 44 H 1.09000 * 109.46853 * 54.99677 * 26 23 22 45 45 H 1.09006 * 109.47006 * 60.00161 * 28 27 26 46 46 H 1.08999 * 109.46991 * 179.97438 * 28 27 26 47 47 H 1.08999 * 109.47415 * 300.00009 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.5987 1.5473 0.1947 11 1 6.3990 1.6166 2.6103 12 1 6.4970 -0.5176 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3380 2.6372 -0.4316 16 6 0.0444 3.3425 -2.6389 17 8 0.8195 3.3742 -3.5726 18 7 -1.1710 3.9138 -2.7522 19 6 -1.5392 4.5441 -3.9460 20 6 -0.7457 4.6545 -5.0998 21 6 -1.4574 5.3304 -6.0297 22 7 -2.6564 5.6380 -5.4910 23 6 -3.7366 6.3702 -6.1568 24 1 -4.3655 6.8507 -5.4075 25 6 -3.1384 7.4345 -7.0790 26 6 -4.5799 5.3961 -6.9819 27 8 -5.7002 6.0880 -7.5371 28 6 -6.5569 5.2646 -8.3307 29 7 -2.6891 5.1303 -4.1860 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8293 -0.0619 2.9495 36 1 2.2719 2.1232 -1.9977 37 1 -1.7905 3.8882 -2.0063 38 1 0.2553 4.2681 -5.2224 39 1 -1.1256 5.5800 -7.0267 40 1 -2.5094 6.9539 -7.8285 41 1 -3.9421 7.9789 -7.5748 42 1 -2.5376 8.1284 -6.4913 43 1 -3.9731 4.9820 -7.7871 44 1 -4.9331 4.5883 -6.3410 45 1 -6.9511 4.4537 -7.7181 46 1 -7.3825 5.8635 -8.7151 47 1 -5.9909 4.8482 -9.1640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439551748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:35 Heat of formation + Delta-G solvation = -28.069172 kcal Electronic energy + Delta-G solvation = -28876.472694 eV Core-core repulsion = 24676.064400 eV Total energy + Delta-G solvation = -4200.408294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62480 -40.20887 -38.65976 -38.18306 -35.80561 -35.26979 -34.05004 -32.42213 -31.00837 -30.25079 -29.43203 -27.94294 -27.31107 -26.13526 -24.96483 -23.10832 -22.88290 -21.33175 -20.57335 -19.82460 -19.43301 -18.29331 -17.69009 -17.04366 -16.49626 -16.39592 -16.29779 -15.93603 -15.62130 -15.44644 -15.11277 -14.64949 -14.31607 -14.09440 -13.87947 -13.67083 -13.35305 -13.18665 -13.00682 -12.76089 -12.71141 -12.17429 -12.09941 -11.86947 -11.65791 -11.60266 -11.34234 -11.20881 -10.98696 -10.92625 -10.89138 -10.76552 -10.35045 -10.27318 -10.25111 -9.70510 -9.14320 -9.08843 -8.99398 -8.57839 -8.39691 -8.05250 -6.18158 -4.27757 1.38519 1.79017 1.92199 2.72159 2.85593 3.22609 3.30932 3.34339 3.40633 3.72514 4.01667 4.08427 4.32203 4.34608 4.57738 4.61416 4.78913 4.81285 4.91526 4.97109 5.06291 5.14352 5.15346 5.17881 5.25805 5.40914 5.53571 5.61229 5.67722 6.04803 6.31296 6.36308 6.49695 6.55008 6.66735 6.86090 6.89283 6.94643 7.07148 7.13515 7.26559 7.45205 7.61334 7.70164 7.78189 7.89066 8.07378 8.41662 8.60376 8.84634 9.39089 10.87270 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027685 B = 0.001940 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.122322 B =14432.349568 C =15023.518187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.665 5.665 14 C 0.499 3.501 15 O -0.526 6.526 16 C 0.517 3.483 17 O -0.499 6.499 18 N -0.615 5.615 19 C 0.304 3.696 20 C -0.262 4.262 21 C 0.063 3.937 22 N -0.365 5.365 23 C 0.168 3.832 24 H 0.111 0.889 25 C -0.159 4.159 26 C 0.051 3.949 27 O -0.387 6.387 28 C 0.033 3.967 29 N -0.318 5.318 30 H 0.035 0.965 31 H 0.026 0.974 32 H 0.052 0.948 33 H 0.035 0.965 34 H 0.104 0.896 35 H 0.265 0.735 36 H 0.402 0.598 37 H 0.427 0.573 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.044 0.956 46 H 0.090 0.910 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.824 10.100 -20.093 26.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.166 3.834 4 H 0.074 0.926 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.314 5.314 14 C 0.277 3.723 15 O -0.404 6.404 16 C 0.299 3.701 17 O -0.371 6.371 18 N -0.265 5.265 19 C 0.048 3.952 20 C -0.292 4.292 21 C -0.082 4.082 22 N -0.151 5.151 23 C 0.066 3.934 24 H 0.129 0.871 25 C -0.217 4.217 26 C -0.027 4.027 27 O -0.305 6.305 28 C -0.064 4.064 29 N -0.148 5.148 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.122 0.878 35 H 0.075 0.925 36 H 0.237 0.763 37 H 0.266 0.734 38 H 0.192 0.808 39 H 0.193 0.807 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.108 0.892 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.978 10.500 -19.418 27.251 hybrid contribution 1.630 -0.605 -0.304 1.765 sum -14.348 9.895 -19.722 26.320 Atomic orbital electron populations 1.21861 0.98290 0.98471 1.01064 1.21965 0.92657 0.99347 1.02814 1.19051 0.94849 0.89429 0.80043 0.92636 1.21242 0.90266 1.39350 1.06576 0.91658 1.24876 0.98841 0.94619 0.95253 1.69892 1.35180 1.37441 1.09354 0.86352 0.84526 0.77818 0.78196 1.19617 1.20850 1.20825 1.46449 1.13385 1.52285 1.19307 1.19418 0.84645 0.81559 0.86689 1.90763 1.51027 1.59455 1.39193 1.20996 0.80773 0.78608 0.89756 1.90654 1.50386 1.56280 1.39735 1.42377 1.17361 1.53191 1.13578 1.19175 0.92611 0.95489 0.87973 1.21932 1.04299 1.10954 0.92060 1.22531 0.86416 0.99135 1.00126 1.48156 1.12286 1.45188 1.09447 1.20925 0.86688 0.90911 0.94911 0.87086 1.22155 1.02387 0.98010 0.99191 1.22879 0.88177 0.94764 0.96917 1.87797 1.37711 1.36662 1.68317 1.22787 0.93861 0.95609 0.94120 1.77423 1.19379 1.21455 0.96517 0.94617 0.95444 0.92896 0.94611 0.87811 0.92489 0.76309 0.73447 0.80786 0.80669 0.91604 0.89185 0.91189 0.92494 0.92190 0.93768 0.89178 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.52 37.16 0.32 -2.65 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.48 2.24 -69.08 -0.15 6.33 16 4 H 0.06 1.53 7.57 -51.93 -0.39 1.13 16 5 C -0.54 -13.81 8.73 -34.44 -0.30 -14.11 16 6 H 0.07 1.63 7.74 -52.49 -0.41 1.23 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.93 11.29 55.43 0.63 -23.30 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.67 -13.76 5.01 -55.40 -0.28 -14.04 16 14 C 0.50 9.70 6.46 -11.63 -0.08 9.63 16 15 O -0.53 -11.15 13.63 5.49 0.07 -11.08 16 16 C 0.52 8.80 7.85 -11.64 -0.09 8.71 16 17 O -0.50 -8.79 13.60 5.46 0.07 -8.71 16 18 N -0.61 -9.36 5.43 -11.58 -0.06 -9.42 16 19 C 0.30 4.51 8.10 -154.55 -1.25 3.26 16 20 C -0.26 -3.53 9.60 -39.82 -0.38 -3.92 16 21 C 0.06 0.64 10.58 -17.24 -0.18 0.46 16 22 N -0.37 -3.98 3.53 -54.88 -0.19 -4.17 16 23 C 0.17 1.35 3.63 -67.93 -0.25 1.10 16 24 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 25 C -0.16 -0.90 8.73 37.16 0.32 -0.58 16 26 C 0.05 0.38 5.64 37.16 0.21 0.59 16 27 O -0.39 -2.93 10.24 -35.23 -0.36 -3.29 16 28 C 0.03 0.17 11.01 101.05 1.11 1.28 16 29 N -0.32 -4.48 12.59 31.41 0.40 -4.08 16 30 H 0.03 0.73 5.66 -51.93 -0.29 0.44 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 35 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.40 7.75 8.01 -40.82 -0.33 7.42 16 37 H 0.43 6.07 8.29 -40.82 -0.34 5.73 16 38 H 0.17 2.49 5.91 -52.49 -0.31 2.18 16 39 H 0.18 1.11 7.25 -52.49 -0.38 0.73 16 40 H 0.06 0.30 7.15 -51.92 -0.37 -0.07 16 41 H 0.09 0.45 7.82 -51.93 -0.41 0.05 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 46 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -30.13 388.82 -6.73 -36.86 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -6.88 Total: 11.50 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -0.96 Total: 8.62 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.49 Total: -55.02 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.21 Total: -23.08 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.13 -6.73 -36.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439551748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.788 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds