Wall clock time and date at job start Tue Mar 31 2020 21:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47398 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46974 * 120.00544 * 9 7 5 12 12 H 1.48508 * 109.47010 * 240.00184 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21363 * 120.00411 * 359.72017 * 14 13 3 16 16 C 1.49344 * 119.99833 * 179.72288 * 14 13 3 17 17 O 1.21393 * 119.99777 * 0.02562 * 16 14 13 18 18 N 1.34773 * 120.00203 * 179.97438 * 16 14 13 19 19 C 1.39927 * 120.00263 * 180.02562 * 18 16 14 20 20 C 1.40461 * 125.97999 * 0.02562 * 19 18 16 21 21 C 1.35212 * 107.86983 * 180.02562 * 20 19 18 22 22 N 1.34994 * 107.87675 * 359.97438 * 21 20 19 23 23 C 1.46499 * 125.97271 * 179.97438 * 22 21 20 24 24 H 1.08992 * 109.46807 * 205.00223 * 23 22 21 25 25 C 1.53003 * 109.47121 * 325.00096 * 23 22 21 26 26 C 1.53000 * 109.47146 * 85.00102 * 23 22 21 27 27 O 1.42895 * 109.47252 * 174.99816 * 26 23 22 28 28 C 1.42897 * 114.00122 * 179.97438 * 27 26 23 29 29 N 1.31276 * 125.98454 * 179.69127 * 19 18 16 30 30 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 31 31 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 33 33 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 34 34 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 35 35 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 36 36 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 37 37 H 0.97000 * 120.00112 * 0.02562 * 18 16 14 38 38 H 1.08001 * 126.06917 * 0.02562 * 20 19 18 39 39 H 1.08002 * 126.06428 * 179.97438 * 21 20 19 40 40 H 1.09007 * 109.46771 * 60.00208 * 25 23 22 41 41 H 1.09000 * 109.47019 * 179.97438 * 25 23 22 42 42 H 1.08995 * 109.47030 * 300.00101 * 25 23 22 43 43 H 1.08999 * 109.47334 * 295.00569 * 26 23 22 44 44 H 1.09000 * 109.46853 * 54.99677 * 26 23 22 45 45 H 1.09006 * 109.47006 * 60.00161 * 28 27 26 46 46 H 1.08999 * 109.46991 * 179.97438 * 28 27 26 47 47 H 1.08999 * 109.47415 * 300.00009 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.5987 1.5473 0.1947 11 1 6.3990 1.6166 2.6103 12 1 6.4970 -0.5176 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3380 2.6372 -0.4316 16 6 0.0444 3.3425 -2.6389 17 8 0.8195 3.3742 -3.5726 18 7 -1.1710 3.9138 -2.7522 19 6 -1.5392 4.5441 -3.9460 20 6 -0.7457 4.6545 -5.0998 21 6 -1.4574 5.3304 -6.0297 22 7 -2.6564 5.6380 -5.4910 23 6 -3.7366 6.3702 -6.1568 24 1 -4.3655 6.8507 -5.4075 25 6 -3.1384 7.4345 -7.0790 26 6 -4.5799 5.3961 -6.9819 27 8 -5.7002 6.0880 -7.5371 28 6 -6.5569 5.2646 -8.3307 29 7 -2.6891 5.1303 -4.1860 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8293 -0.0619 2.9495 36 1 2.2719 2.1232 -1.9977 37 1 -1.7905 3.8882 -2.0063 38 1 0.2553 4.2681 -5.2224 39 1 -1.1256 5.5800 -7.0267 40 1 -2.5094 6.9539 -7.8285 41 1 -3.9421 7.9789 -7.5748 42 1 -2.5376 8.1284 -6.4913 43 1 -3.9731 4.9820 -7.7871 44 1 -4.9331 4.5883 -6.3410 45 1 -6.9511 4.4537 -7.7181 46 1 -7.3825 5.8635 -8.7151 47 1 -5.9909 4.8482 -9.1640 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439551748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:34 Heat of formation + Delta-G solvation = -48.922006 kcal Electronic energy + Delta-G solvation = -28877.376941 eV Core-core repulsion = 24676.064400 eV Total energy + Delta-G solvation = -4201.312541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.65311 -41.59798 -39.83045 -39.10454 -37.26092 -36.57277 -35.06631 -34.28324 -32.82273 -31.21611 -30.32360 -29.16992 -28.39925 -26.78296 -26.32396 -24.83520 -23.78458 -22.71558 -21.52461 -21.44075 -20.90074 -19.71106 -18.50908 -18.11226 -18.04630 -17.39654 -17.28249 -16.99792 -16.89875 -16.79792 -16.31968 -15.97134 -15.79249 -15.18948 -14.97034 -14.70132 -14.60624 -14.44792 -14.01779 -13.90183 -13.65708 -13.49001 -13.19955 -13.17973 -12.94425 -12.72156 -12.68086 -12.60807 -12.36974 -12.29188 -12.13433 -12.08958 -11.82254 -11.80966 -11.58617 -11.08228 -10.76564 -10.65935 -10.53565 -10.00128 -9.84793 -9.41133 -8.17249 -6.33948 0.08377 0.77080 0.88489 1.45566 1.47405 1.56943 1.61481 1.70932 2.27333 2.40443 2.65791 2.89299 3.12895 3.42181 3.47406 3.77537 3.86019 4.02483 4.09369 4.35787 4.43266 4.47424 4.50029 4.53598 4.55952 4.56450 4.70142 4.72319 4.80762 4.84218 4.89535 4.92880 5.03665 5.21524 5.23629 5.36098 5.39836 5.55763 5.58006 5.67844 5.78323 5.86552 5.97356 6.09414 6.12559 6.42431 6.67938 6.68688 6.76390 7.10088 7.37787 8.88166 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027685 B = 0.001940 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.122322 B =14432.349568 C =15023.518187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.123 4.123 3 C 0.275 3.725 4 H 0.016 0.984 5 C -0.551 4.551 6 H 0.070 0.930 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.666 5.666 14 C 0.501 3.499 15 O -0.545 6.545 16 C 0.528 3.472 17 O -0.504 6.504 18 N -0.606 5.606 19 C 0.280 3.720 20 C -0.291 4.291 21 C 0.090 3.910 22 N -0.356 5.356 23 C 0.162 3.838 24 H 0.102 0.898 25 C -0.152 4.152 26 C 0.057 3.943 27 O -0.399 6.399 28 C 0.026 3.974 29 N -0.342 5.342 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.267 0.733 36 H 0.410 0.590 37 H 0.430 0.570 38 H 0.165 0.835 39 H 0.222 0.778 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.104 0.896 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.864 10.979 -22.903 29.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.173 3.827 4 H 0.034 0.966 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.204 1.204 13 N -0.316 5.316 14 C 0.281 3.719 15 O -0.424 6.424 16 C 0.309 3.691 17 O -0.376 6.376 18 N -0.256 5.256 19 C 0.026 3.974 20 C -0.321 4.321 21 C -0.056 4.056 22 N -0.142 5.142 23 C 0.061 3.939 24 H 0.120 0.880 25 C -0.210 4.210 26 C -0.021 4.021 27 O -0.318 6.318 28 C -0.070 4.070 29 N -0.172 5.172 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.246 0.754 37 H 0.268 0.732 38 H 0.182 0.818 39 H 0.238 0.762 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.122 0.878 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.061 11.401 -22.254 29.718 hybrid contribution 1.479 -0.788 0.483 1.744 sum -14.582 10.612 -21.771 28.271 Atomic orbital electron populations 1.21719 0.96682 0.99691 1.00397 1.21819 0.94029 0.98536 1.01813 1.18682 0.94198 0.89609 0.80249 0.96626 1.21549 0.91115 1.39348 1.06886 0.91166 1.25688 1.03164 0.94243 0.94932 1.70020 1.36924 1.38048 1.09816 0.85336 0.79253 0.77849 0.78137 1.18795 1.20905 1.20373 1.46197 1.14214 1.52703 1.18479 1.19756 0.83867 0.80890 0.87423 1.90752 1.51468 1.59924 1.40277 1.20243 0.81456 0.78966 0.88478 1.90662 1.50744 1.56785 1.39442 1.42168 1.16580 1.52608 1.14221 1.19330 0.93511 0.96582 0.88019 1.21954 1.04467 1.13073 0.92631 1.23092 0.85112 0.96438 1.00990 1.48452 1.13162 1.44103 1.08445 1.21206 0.86275 0.91377 0.95081 0.88040 1.22148 1.02838 0.97151 0.98895 1.22761 0.88394 0.93964 0.96973 1.87776 1.37949 1.37357 1.68698 1.22970 0.94109 0.95739 0.94157 1.77356 1.19307 1.21902 0.98597 0.94149 0.93226 0.94595 0.93960 0.90261 0.92417 0.75380 0.73167 0.81798 0.76156 0.89737 0.88265 0.91384 0.90938 0.93950 0.93933 0.87776 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 8.52 71.98 0.61 -4.84 16 2 C -0.12 -5.86 5.45 30.59 0.17 -5.69 16 3 C 0.27 13.69 2.24 44.25 0.10 13.79 16 4 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 5 C -0.55 -28.69 8.73 25.60 0.22 -28.47 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 1.08 5.29 84.65 0.45 1.52 16 8 N -0.91 -50.40 11.29 21.45 0.24 -50.15 16 9 Si 0.97 41.61 29.54 68.60 2.03 43.63 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 13 N -0.67 -27.96 5.01 -447.53 -2.24 -30.21 16 14 C 0.50 19.81 6.46 87.24 0.56 20.37 16 15 O -0.55 -23.69 13.63 -3.29 -0.04 -23.74 16 16 C 0.53 18.05 7.85 87.24 0.69 18.73 16 17 O -0.50 -17.62 13.60 -3.38 -0.05 -17.67 16 18 N -0.61 -18.59 5.43 -308.89 -1.68 -20.27 16 19 C 0.28 8.22 8.10 133.40 1.08 9.30 16 20 C -0.29 -7.49 9.60 22.11 0.21 -7.28 16 21 C 0.09 1.59 10.58 83.51 0.88 2.47 16 22 N -0.36 -7.09 3.53 -327.54 -1.15 -8.24 16 23 C 0.16 2.27 3.63 44.99 0.16 2.43 16 24 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 25 C -0.15 -1.23 8.73 71.98 0.63 -0.61 16 26 C 0.06 0.74 5.64 71.98 0.41 1.15 16 27 O -0.40 -5.25 10.24 -148.98 -1.53 -6.77 16 28 C 0.03 0.21 11.01 113.37 1.25 1.46 16 29 N -0.34 -9.41 12.59 -54.54 -0.69 -10.09 16 30 H 0.04 1.66 5.66 -2.39 -0.01 1.64 16 31 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.03 1.63 7.85 -2.39 -0.02 1.61 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 4.20 5.95 -2.39 -0.01 4.19 16 35 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 36 H 0.41 15.85 8.01 -92.71 -0.74 15.11 16 37 H 0.43 12.46 8.29 -92.71 -0.77 11.69 16 38 H 0.16 4.56 5.91 -2.91 -0.02 4.54 16 39 H 0.22 1.72 7.25 -2.91 -0.02 1.70 16 40 H 0.08 0.39 7.15 -2.38 -0.02 0.37 16 41 H 0.10 0.69 7.82 -2.39 -0.02 0.67 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.04 0.36 8.14 -2.38 -0.02 0.34 16 46 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -65.97 388.82 1.82 -64.16 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: -0.50 Total: 35.00 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 7.42 Total: 24.35 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -5.52 Total: -118.97 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -1.62 Total: -48.18 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -65.97 1.82 -64.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439551748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.234 kcal (2) G-P(sol) polarization free energy of solvation -65.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds