Wall clock time and date at job start Tue Mar 31 2020 21:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99689 * 2 1 4 4 H 1.09000 * 109.47449 * 2.45411 * 3 2 1 5 5 C 1.53002 * 109.47069 * 242.45201 * 3 2 1 6 6 N 1.46499 * 109.47146 * 63.22135 * 5 3 2 7 7 C 1.34770 * 120.00162 * 174.64313 * 6 5 3 8 8 O 1.21369 * 119.99773 * 359.97438 * 7 6 5 9 9 C 1.49346 * 120.00150 * 179.97438 * 7 6 5 10 10 O 1.21385 * 119.99841 * 359.72282 * 9 7 6 11 11 N 1.34781 * 119.99792 * 179.97438 * 9 7 6 12 12 C 1.39929 * 119.99524 * 179.72111 * 11 9 7 13 13 C 1.40457 * 125.98381 * 359.72853 * 12 11 9 14 14 C 1.35217 * 107.86623 * 179.82467 * 13 12 11 15 15 N 1.34986 * 107.87566 * 0.42545 * 14 13 12 16 16 C 1.46498 * 125.96814 * 179.71217 * 15 14 13 17 17 C 1.50702 * 109.47050 * 124.99684 * 16 15 14 18 18 H 1.07996 * 120.00235 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99630 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00453 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99825 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46941 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46926 * 120.00156 * 21 19 17 24 24 H 1.48496 * 109.47054 * 240.00318 * 21 19 17 25 25 N 1.31276 * 125.97816 * 180.02562 * 12 11 9 26 26 C 1.52998 * 109.46937 * 122.45585 * 3 2 1 27 27 C 1.53004 * 109.47080 * 299.99351 * 26 3 2 28 28 C 1.52998 * 109.47328 * 59.99649 * 26 3 2 29 29 H 1.09001 * 109.47055 * 294.17701 * 1 2 3 30 30 H 1.09001 * 109.47169 * 54.17769 * 1 2 3 31 31 H 1.08999 * 109.46963 * 174.17691 * 1 2 3 32 32 H 1.09004 * 109.47080 * 303.22220 * 5 3 2 33 33 H 1.08999 * 109.47223 * 183.22289 * 5 3 2 34 34 H 0.97001 * 119.99846 * 354.63784 * 6 5 3 35 35 H 0.97001 * 119.99949 * 359.73263 * 11 9 7 36 36 H 1.07994 * 126.06610 * 359.96775 * 13 12 11 37 37 H 1.08004 * 126.06133 * 180.15278 * 14 13 12 38 38 H 1.09003 * 109.47039 * 244.99414 * 16 15 14 39 39 H 1.08997 * 109.47427 * 4.99507 * 16 15 14 40 40 H 0.97002 * 119.99845 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.47166 * 180.02562 * 26 3 2 42 42 H 1.09005 * 109.46479 * 60.00365 * 27 26 3 43 43 H 1.08998 * 109.47332 * 180.02562 * 27 26 3 44 44 H 1.08994 * 109.47354 * 300.00655 * 27 26 3 45 45 H 1.08997 * 109.46815 * 60.00400 * 28 26 3 46 46 H 1.08998 * 109.47121 * 180.02562 * 28 26 3 47 47 H 1.08997 * 109.47215 * 300.00113 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2201 2.0550 0.0440 5 6 2.8271 1.5001 -1.2790 6 7 1.9381 1.4318 -2.4414 7 6 2.4204 1.6839 -3.6743 8 8 3.5911 1.9679 -3.8216 9 6 1.5142 1.6137 -4.8594 10 8 0.3445 1.3247 -4.7126 11 7 1.9965 1.8663 -6.0923 12 6 1.1487 1.7948 -7.2033 13 6 -0.2171 1.4680 -7.1795 14 6 -0.6763 1.5115 -8.4506 15 7 0.3571 1.8430 -9.2533 16 6 0.3013 1.9947 -10.7093 17 6 0.8130 3.3595 -11.0922 18 1 1.1468 4.0451 -10.3274 19 6 0.8560 3.7324 -12.4188 20 7 0.4500 2.8973 -13.3502 21 14 1.4910 5.4239 -12.8935 22 1 1.8841 6.1665 -11.6691 23 1 2.6707 5.2780 -13.7836 24 1 0.4234 6.1716 -13.6051 25 7 1.4920 2.0162 -8.4509 26 6 2.9248 1.4565 1.2172 27 6 2.1079 1.2620 2.4962 28 6 4.0340 0.4045 1.1555 29 1 -0.3633 0.4209 0.9375 30 1 -0.3633 0.6015 -0.8333 31 1 -0.3633 -1.0224 -0.1043 32 1 3.5809 0.7160 -1.3515 33 1 3.3168 2.4735 -1.2528 34 1 1.0024 1.2051 -2.3236 35 1 2.9312 2.0975 -6.2095 36 1 -0.7980 1.2272 -6.3015 37 1 -1.6891 1.3117 -8.7678 38 1 0.9204 1.2299 -11.1783 39 1 -0.7293 1.8852 -11.0469 40 1 0.4806 3.1596 -14.2836 41 1 3.3678 2.4525 1.2175 42 1 1.6646 0.2662 2.4961 43 1 2.7594 1.3701 3.3634 44 1 1.3178 2.0115 2.5402 45 1 4.6159 0.5432 0.2443 46 1 4.6852 0.5118 2.0228 47 1 3.5906 -0.5913 1.1554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444517100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:17 Heat of formation + Delta-G solvation = -37.724757 kcal Electronic energy + Delta-G solvation = -28568.627919 eV Core-core repulsion = 24367.800927 eV Total energy + Delta-G solvation = -4200.826992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12219 -40.32056 -39.41837 -38.36770 -35.58123 -35.22708 -34.42976 -33.36312 -31.05595 -29.79655 -29.42858 -27.55241 -27.20692 -26.77017 -25.30516 -23.48491 -22.67936 -21.34792 -20.78446 -20.20813 -19.67325 -18.42640 -17.26705 -17.04077 -16.62812 -16.53023 -16.08776 -16.04213 -15.89654 -15.25366 -14.86559 -14.71792 -14.48078 -14.33899 -14.05467 -13.98953 -13.76387 -13.41973 -13.00448 -12.93698 -12.48860 -12.42825 -12.33385 -12.31285 -11.91878 -11.90143 -11.65559 -11.54370 -11.18875 -11.12294 -11.07879 -10.87461 -10.55400 -10.28837 -10.12297 -10.00190 -9.58381 -9.55891 -9.52984 -8.66124 -8.24344 -7.59502 -6.26873 -4.31976 1.17994 2.01907 2.64898 3.01135 3.15167 3.21647 3.23103 3.29400 3.36478 3.65047 3.81669 4.14429 4.27467 4.32574 4.37815 4.42329 4.65586 4.83369 4.91430 4.99967 5.08408 5.08624 5.12870 5.27307 5.29855 5.36853 5.41361 5.42099 5.53088 5.62828 5.69944 5.82173 5.88436 5.96767 6.08763 6.29667 6.39568 6.67365 6.77700 6.84883 7.01026 7.22759 7.33632 7.59368 7.68111 7.83622 7.93416 7.96510 8.52896 8.77000 9.34049 10.81954 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026848 B = 0.001827 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.646733 B =15318.714061 C =15935.646080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.374 6.374 3 C 0.080 3.920 4 H 0.073 0.927 5 C 0.104 3.896 6 N -0.698 5.698 7 C 0.516 3.484 8 O -0.514 6.514 9 C 0.513 3.487 10 O -0.501 6.501 11 N -0.598 5.598 12 C 0.250 3.750 13 C -0.286 4.286 14 C 0.053 3.947 15 N -0.314 5.314 16 C 0.256 3.744 17 C -0.530 4.530 18 H 0.070 0.930 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.294 5.294 26 C -0.100 4.100 27 C -0.146 4.146 28 C -0.148 4.148 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.411 0.589 35 H 0.423 0.577 36 H 0.161 0.839 37 H 0.171 0.829 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.267 0.733 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 -4.792 30.119 30.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.293 6.293 3 C 0.021 3.979 4 H 0.092 0.908 5 C -0.019 4.019 6 N -0.352 5.352 7 C 0.296 3.704 8 O -0.389 6.389 9 C 0.293 3.707 10 O -0.374 6.374 11 N -0.246 5.246 12 C -0.003 4.003 13 C -0.317 4.317 14 C -0.097 4.097 15 N -0.096 5.096 16 C 0.139 3.861 17 C -0.568 4.568 18 H 0.088 0.912 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.125 5.125 26 C -0.119 4.119 27 C -0.204 4.204 28 C -0.206 4.206 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.248 0.752 35 H 0.261 0.739 36 H 0.178 0.822 37 H 0.188 0.812 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.547 -4.662 29.009 29.422 hybrid contribution -0.549 0.915 0.028 1.067 sum 0.998 -3.747 29.037 29.295 Atomic orbital electron populations 1.22948 0.80755 1.03288 1.00087 1.87970 1.19694 1.26721 1.94886 1.22468 0.95877 0.85929 0.93622 0.90849 1.22001 0.93299 1.03566 0.83021 1.45613 1.14667 1.69391 1.05505 1.19886 0.87759 0.78471 0.84285 1.90799 1.16591 1.45964 1.85579 1.19898 0.87974 0.79140 0.83717 1.90700 1.16471 1.45137 1.85102 1.41991 1.13678 1.65725 1.03187 1.19012 0.90538 1.03782 0.86923 1.21506 0.93604 1.18575 0.98001 1.22582 0.95121 1.01308 0.90657 1.49168 1.03780 1.47867 1.08782 1.19809 0.99441 0.99185 0.67648 1.21292 1.43719 0.98920 0.92861 0.91186 1.24946 0.94955 0.98222 0.95933 1.69925 1.46694 1.35721 1.00935 0.86267 0.78551 0.83064 0.78604 1.19533 1.20658 1.20756 1.77411 1.09874 1.26330 0.98922 1.21352 0.96175 1.00494 0.93872 1.21795 0.99770 1.02277 0.96512 1.21834 0.97513 0.99452 1.01751 0.93788 0.93804 0.89248 0.89651 0.89493 0.75223 0.73918 0.82182 0.81227 0.93522 0.92351 0.92342 0.89934 0.91864 0.92326 0.92964 0.92301 0.92690 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.56 101.05 1.07 1.20 16 2 O -0.37 -2.66 8.82 -35.23 -0.31 -2.97 16 3 C 0.08 0.48 2.04 -26.73 -0.05 0.42 16 4 H 0.07 0.37 7.60 -51.93 -0.39 -0.02 16 5 C 0.10 0.81 4.90 -4.04 -0.02 0.79 16 6 N -0.70 -6.70 5.48 -60.76 -0.33 -7.03 16 7 C 0.52 6.52 7.89 -11.64 -0.09 6.43 16 8 O -0.51 -7.46 16.47 5.48 0.09 -7.36 16 9 C 0.51 7.55 7.85 -11.63 -0.09 7.46 16 10 O -0.50 -7.86 13.60 5.47 0.07 -7.78 16 11 N -0.60 -9.83 5.43 -11.58 -0.06 -9.89 16 12 C 0.25 5.00 8.10 -154.55 -1.25 3.75 16 13 C -0.29 -5.42 9.60 -39.82 -0.38 -5.81 16 14 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 15 N -0.31 -7.17 3.67 -62.56 -0.23 -7.40 16 16 C 0.26 6.42 6.26 -5.19 -0.03 6.39 16 17 C -0.53 -14.63 9.24 -34.44 -0.32 -14.95 16 18 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 21 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 N -0.29 -6.76 12.42 31.41 0.39 -6.37 16 26 C -0.10 -0.51 2.81 -90.62 -0.25 -0.77 16 27 C -0.15 -0.68 9.05 37.16 0.34 -0.35 16 28 C -0.15 -0.85 8.69 37.16 0.32 -0.52 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.04 0.22 7.09 -51.93 -0.37 -0.15 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.73 6.61 -51.93 -0.34 0.38 16 33 H 0.09 0.64 8.13 -51.93 -0.42 0.22 16 34 H 0.41 3.57 6.65 -40.82 -0.27 3.30 16 35 H 0.42 6.40 8.29 -40.82 -0.34 6.06 16 36 H 0.16 2.84 5.91 -52.49 -0.31 2.53 16 37 H 0.17 2.61 8.06 -52.48 -0.42 2.18 16 38 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 43 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 0.35 6.50 -51.93 -0.34 0.01 16 46 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -32.13 395.33 -6.70 -38.84 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.93 Total: 5.63 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -1.06 Total: 6.48 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.50 Total: -55.09 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.15 Total: -18.12 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.13 -6.70 -38.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444517100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.113 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds