Wall clock time and date at job start Tue Mar 31 2020 21:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 113.99689 * 2 1 4 4 H 1.09000 * 109.47449 * 2.45411 * 3 2 1 5 5 C 1.53002 * 109.47069 * 242.45201 * 3 2 1 6 6 N 1.46499 * 109.47146 * 63.22135 * 5 3 2 7 7 C 1.34770 * 120.00162 * 174.64313 * 6 5 3 8 8 O 1.21369 * 119.99773 * 359.97438 * 7 6 5 9 9 C 1.49346 * 120.00150 * 179.97438 * 7 6 5 10 10 O 1.21385 * 119.99841 * 359.72282 * 9 7 6 11 11 N 1.34781 * 119.99792 * 179.97438 * 9 7 6 12 12 C 1.39929 * 119.99524 * 179.72111 * 11 9 7 13 13 C 1.40457 * 125.98381 * 359.72853 * 12 11 9 14 14 C 1.35217 * 107.86623 * 179.82467 * 13 12 11 15 15 N 1.34986 * 107.87566 * 0.42545 * 14 13 12 16 16 C 1.46498 * 125.96814 * 179.71217 * 15 14 13 17 17 C 1.50702 * 109.47050 * 124.99684 * 16 15 14 18 18 H 1.07996 * 120.00235 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99630 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00453 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99825 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46941 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46926 * 120.00156 * 21 19 17 24 24 H 1.48496 * 109.47054 * 240.00318 * 21 19 17 25 25 N 1.31276 * 125.97816 * 180.02562 * 12 11 9 26 26 C 1.52998 * 109.46937 * 122.45585 * 3 2 1 27 27 C 1.53004 * 109.47080 * 299.99351 * 26 3 2 28 28 C 1.52998 * 109.47328 * 59.99649 * 26 3 2 29 29 H 1.09001 * 109.47055 * 294.17701 * 1 2 3 30 30 H 1.09001 * 109.47169 * 54.17769 * 1 2 3 31 31 H 1.08999 * 109.46963 * 174.17691 * 1 2 3 32 32 H 1.09004 * 109.47080 * 303.22220 * 5 3 2 33 33 H 1.08999 * 109.47223 * 183.22289 * 5 3 2 34 34 H 0.97001 * 119.99846 * 354.63784 * 6 5 3 35 35 H 0.97001 * 119.99949 * 359.73263 * 11 9 7 36 36 H 1.07994 * 126.06610 * 359.96775 * 13 12 11 37 37 H 1.08004 * 126.06133 * 180.15278 * 14 13 12 38 38 H 1.09003 * 109.47039 * 244.99414 * 16 15 14 39 39 H 1.08997 * 109.47427 * 4.99507 * 16 15 14 40 40 H 0.97002 * 119.99845 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.47166 * 180.02562 * 26 3 2 42 42 H 1.09005 * 109.46479 * 60.00365 * 27 26 3 43 43 H 1.08998 * 109.47332 * 180.02562 * 27 26 3 44 44 H 1.08994 * 109.47354 * 300.00655 * 27 26 3 45 45 H 1.08997 * 109.46815 * 60.00400 * 28 26 3 46 46 H 1.08998 * 109.47121 * 180.02562 * 28 26 3 47 47 H 1.08997 * 109.47215 * 300.00113 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2201 2.0550 0.0440 5 6 2.8271 1.5001 -1.2790 6 7 1.9381 1.4318 -2.4414 7 6 2.4204 1.6839 -3.6743 8 8 3.5911 1.9679 -3.8216 9 6 1.5142 1.6137 -4.8594 10 8 0.3445 1.3247 -4.7126 11 7 1.9965 1.8663 -6.0923 12 6 1.1487 1.7948 -7.2033 13 6 -0.2171 1.4680 -7.1795 14 6 -0.6763 1.5115 -8.4506 15 7 0.3571 1.8430 -9.2533 16 6 0.3013 1.9947 -10.7093 17 6 0.8130 3.3595 -11.0922 18 1 1.1468 4.0451 -10.3274 19 6 0.8560 3.7324 -12.4188 20 7 0.4500 2.8973 -13.3502 21 14 1.4910 5.4239 -12.8935 22 1 1.8841 6.1665 -11.6691 23 1 2.6707 5.2780 -13.7836 24 1 0.4234 6.1716 -13.6051 25 7 1.4920 2.0162 -8.4509 26 6 2.9248 1.4565 1.2172 27 6 2.1079 1.2620 2.4962 28 6 4.0340 0.4045 1.1555 29 1 -0.3633 0.4209 0.9375 30 1 -0.3633 0.6015 -0.8333 31 1 -0.3633 -1.0224 -0.1043 32 1 3.5809 0.7160 -1.3515 33 1 3.3168 2.4735 -1.2528 34 1 1.0024 1.2051 -2.3236 35 1 2.9312 2.0975 -6.2095 36 1 -0.7980 1.2272 -6.3015 37 1 -1.6891 1.3117 -8.7678 38 1 0.9204 1.2299 -11.1783 39 1 -0.7293 1.8852 -11.0469 40 1 0.4806 3.1596 -14.2836 41 1 3.3678 2.4525 1.2175 42 1 1.6646 0.2662 2.4961 43 1 2.7594 1.3701 3.3634 44 1 1.3178 2.0115 2.5402 45 1 4.6159 0.5432 0.2443 46 1 4.6852 0.5118 2.0228 47 1 3.5906 -0.5913 1.1554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444517100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:17 Heat of formation + Delta-G solvation = -59.944395 kcal Electronic energy + Delta-G solvation = -28569.591435 eV Core-core repulsion = 24367.800927 eV Total energy + Delta-G solvation = -4201.790508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.46588 -41.57884 -40.18025 -39.39756 -36.70411 -35.92550 -35.51183 -35.14115 -32.84249 -31.02720 -30.45827 -28.81485 -27.96387 -27.50294 -26.41754 -24.84455 -23.86521 -22.59592 -21.92617 -21.29725 -20.72604 -19.55679 -18.71629 -18.29372 -17.89223 -17.70266 -17.16234 -16.93144 -16.91909 -16.42318 -16.21349 -15.91050 -15.66649 -15.31395 -14.98752 -14.85367 -14.59349 -14.41765 -14.24939 -14.02812 -13.87969 -13.72973 -13.58845 -13.03321 -12.90833 -12.82858 -12.75171 -12.64394 -12.34520 -12.32967 -12.14997 -12.02073 -11.65877 -11.61100 -11.55474 -11.43105 -10.89041 -10.72957 -10.46764 -10.40024 -9.84250 -9.22563 -8.34374 -6.47780 0.01918 0.83567 1.13220 1.36615 1.38827 1.51279 1.72595 1.82386 2.24259 2.33572 2.56102 2.78303 2.98041 3.20195 3.63256 3.89230 3.90694 3.94519 4.21688 4.23055 4.43490 4.46512 4.52466 4.58548 4.62384 4.70956 4.77413 4.83323 4.87870 4.90110 4.93489 4.94898 5.01969 5.04448 5.06678 5.08975 5.25945 5.44619 5.52668 5.55815 5.72621 5.77480 5.82879 6.11056 6.23315 6.24867 6.52053 6.63760 6.74235 6.95841 7.22288 8.73656 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026848 B = 0.001827 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.646733 B =15318.714061 C =15935.646080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.391 6.391 3 C 0.083 3.917 4 H 0.088 0.912 5 C 0.101 3.899 6 N -0.680 5.680 7 C 0.523 3.477 8 O -0.534 6.534 9 C 0.517 3.483 10 O -0.507 6.507 11 N -0.600 5.600 12 C 0.257 3.743 13 C -0.287 4.287 14 C 0.061 3.939 15 N -0.339 5.339 16 C 0.270 3.730 17 C -0.548 4.548 18 H 0.052 0.948 19 C 0.020 3.980 20 N -0.919 5.919 21 Si 0.971 3.029 22 H -0.276 1.276 23 H -0.274 1.274 24 H -0.269 1.269 25 N -0.342 5.342 26 C -0.099 4.099 27 C -0.143 4.143 28 C -0.147 4.147 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.417 0.583 35 H 0.428 0.572 36 H 0.177 0.823 37 H 0.208 0.792 38 H 0.023 0.977 39 H 0.064 0.936 40 H 0.273 0.727 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -4.069 31.891 32.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.310 6.310 3 C 0.025 3.975 4 H 0.106 0.894 5 C -0.021 4.021 6 N -0.333 5.333 7 C 0.302 3.698 8 O -0.411 6.411 9 C 0.298 3.702 10 O -0.380 6.380 11 N -0.250 5.250 12 C 0.003 3.997 13 C -0.318 4.318 14 C -0.088 4.088 15 N -0.121 5.121 16 C 0.152 3.848 17 C -0.586 4.586 18 H 0.070 0.930 19 C -0.181 4.181 20 N -0.558 5.558 21 Si 0.795 3.205 22 H -0.200 1.200 23 H -0.200 1.200 24 H -0.194 1.194 25 N -0.173 5.173 26 C -0.118 4.118 27 C -0.201 4.201 28 C -0.205 4.205 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.255 0.745 35 H 0.266 0.734 36 H 0.194 0.806 37 H 0.224 0.776 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.886 -3.960 30.836 31.102 hybrid contribution -0.379 0.612 -0.357 0.804 sum 0.507 -3.347 30.479 30.667 Atomic orbital electron populations 1.23069 0.79918 1.03719 1.00881 1.87958 1.20717 1.27360 1.94932 1.22494 0.96173 0.86003 0.92839 0.89440 1.22204 0.93249 1.03794 0.82872 1.45629 1.15247 1.67512 1.04930 1.19458 0.87003 0.78923 0.84382 1.90802 1.17138 1.47471 1.85735 1.20324 0.88181 0.78017 0.83680 1.90678 1.16968 1.45135 1.85236 1.42109 1.13680 1.66249 1.02917 1.19331 0.91476 1.01873 0.86973 1.21750 0.93245 1.18385 0.98424 1.23257 0.95910 0.99342 0.90266 1.48908 1.04879 1.50112 1.08213 1.19401 0.98861 0.97254 0.69296 1.21430 1.44404 0.99884 0.92919 0.93010 1.25712 0.94908 1.01730 0.95748 1.69992 1.47134 1.37276 1.01370 0.85315 0.78382 0.78777 0.78027 1.20048 1.19967 1.19382 1.77323 1.10900 1.28783 1.00271 1.21377 0.95858 1.00849 0.93673 1.21764 0.99959 1.01999 0.96334 1.21815 0.97773 0.99025 1.01839 0.92556 0.93516 0.89018 0.90318 0.88703 0.74486 0.73378 0.80606 0.77569 0.95921 0.91842 0.91824 0.88721 0.92731 0.91838 0.92191 0.92798 0.91981 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.56 113.37 1.20 1.38 16 2 O -0.39 -4.96 8.82 -148.98 -1.31 -6.27 16 3 C 0.08 0.84 2.04 30.59 0.06 0.90 16 4 H 0.09 0.65 7.60 -2.39 -0.02 0.63 16 5 C 0.10 1.40 4.90 86.38 0.42 1.83 16 6 N -0.68 -11.91 5.48 -464.51 -2.55 -14.46 16 7 C 0.52 12.58 7.89 87.24 0.69 13.27 16 8 O -0.53 -15.04 16.47 -3.30 -0.05 -15.09 16 9 C 0.52 14.65 7.85 87.24 0.69 15.34 16 10 O -0.51 -15.06 13.60 -3.35 -0.05 -15.10 16 11 N -0.60 -19.53 5.43 -308.89 -1.68 -21.21 16 12 C 0.26 10.24 8.10 133.40 1.08 11.32 16 13 C -0.29 -10.56 9.60 22.11 0.21 -10.35 16 14 C 0.06 2.28 11.43 83.51 0.95 3.23 16 15 N -0.34 -15.64 3.67 -351.85 -1.29 -16.93 16 16 C 0.27 13.85 6.26 85.63 0.54 14.38 16 17 C -0.55 -30.84 9.24 25.60 0.24 -30.60 16 18 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 19 C 0.02 1.08 5.46 84.65 0.46 1.54 16 20 N -0.92 -51.76 13.29 21.45 0.28 -51.47 16 21 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 N -0.34 -15.99 12.42 -54.54 -0.68 -16.66 16 26 C -0.10 -0.83 2.81 -10.79 -0.03 -0.86 16 27 C -0.14 -1.06 9.05 71.98 0.65 -0.41 16 28 C -0.15 -1.52 8.69 71.98 0.63 -0.90 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.37 7.09 -2.39 -0.02 0.36 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 1.25 6.61 -2.38 -0.02 1.24 16 33 H 0.09 1.22 8.13 -2.39 -0.02 1.20 16 34 H 0.42 6.41 6.65 -92.71 -0.62 5.79 16 35 H 0.43 13.01 8.29 -92.71 -0.77 12.24 16 36 H 0.18 5.87 5.91 -2.91 -0.02 5.86 16 37 H 0.21 5.87 8.06 -2.91 -0.02 5.84 16 38 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 3.13 8.07 -2.39 -0.02 3.11 16 40 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.05 0.51 7.68 -2.38 -0.02 0.49 16 43 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.05 0.60 6.50 -2.39 -0.02 0.58 16 46 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.05 0.68 7.68 -2.39 -0.02 0.67 16 Total: -1.00 -68.69 395.33 2.12 -66.58 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.38 Total: 24.81 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 7.79 Total: 20.07 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -5.91 Total: -120.74 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -1.41 Total: -36.46 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -68.69 2.12 -66.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444517100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.633 kcal (2) G-P(sol) polarization free energy of solvation -68.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds