Wall clock time and date at job start Tue Mar 31 2020 21:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99397 * 2 1 4 4 H 1.09000 * 109.47410 * 30.89032 * 3 2 1 5 5 C 1.53003 * 109.46953 * 150.89442 * 3 2 1 6 6 N 1.46505 * 109.46839 * 299.99839 * 5 3 2 7 7 C 1.34774 * 119.99799 * 180.02562 * 6 5 3 8 8 O 1.21360 * 120.00136 * 359.97438 * 7 6 5 9 9 C 1.49342 * 119.99881 * 179.97438 * 7 6 5 10 10 O 1.21387 * 119.99966 * 0.02562 * 9 7 6 11 11 N 1.34772 * 120.00255 * 179.97438 * 9 7 6 12 12 C 1.39929 * 120.00266 * 180.02562 * 11 9 7 13 13 C 1.40455 * 125.98178 * 359.97438 * 12 11 9 14 14 C 1.35214 * 107.87034 * 179.73643 * 13 12 11 15 15 N 1.34989 * 107.87203 * 0.42514 * 14 13 12 16 16 C 1.46507 * 125.97077 * 179.83563 * 15 14 13 17 17 C 1.50697 * 109.47211 * 124.71539 * 16 15 14 18 18 H 1.07996 * 119.99899 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99865 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00548 * 359.72294 * 19 17 16 21 21 Si 1.86805 * 119.99729 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47247 * 269.72006 * 21 19 17 23 23 H 1.48497 * 109.47188 * 29.72043 * 21 19 17 24 24 H 1.48501 * 109.46907 * 149.72187 * 21 19 17 25 25 N 1.31275 * 125.98069 * 179.97438 * 12 11 9 26 26 C 1.53003 * 109.47411 * 270.88942 * 3 2 1 27 27 C 1.52996 * 109.47115 * 178.04574 * 26 3 2 28 28 C 1.53005 * 109.47147 * 298.04827 * 26 3 2 29 29 H 1.08999 * 109.46912 * 175.52977 * 1 2 3 30 30 H 1.08994 * 109.47347 * 295.52688 * 1 2 3 31 31 H 1.08995 * 109.47389 * 55.53195 * 1 2 3 32 32 H 1.08995 * 109.47221 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47398 * 59.99582 * 5 3 2 34 34 H 0.96995 * 119.99660 * 359.97438 * 6 5 3 35 35 H 0.97009 * 120.00097 * 359.97438 * 11 9 7 36 36 H 1.08000 * 126.06475 * 359.97438 * 13 12 11 37 37 H 1.08004 * 126.06155 * 180.26012 * 14 13 12 38 38 H 1.09008 * 109.46490 * 4.71746 * 16 15 14 39 39 H 1.08994 * 109.47081 * 244.72380 * 16 15 14 40 40 H 0.97003 * 119.99167 * 0.27522 * 20 19 17 41 41 H 1.08999 * 109.47056 * 58.04469 * 26 3 2 42 42 H 1.08998 * 109.47391 * 299.99772 * 27 26 3 43 43 H 1.08998 * 109.47333 * 60.00971 * 27 26 3 44 44 H 1.09005 * 109.47032 * 179.97438 * 27 26 3 45 45 H 1.08998 * 109.47203 * 53.57199 * 28 26 3 46 46 H 1.08999 * 109.46887 * 173.57497 * 28 26 3 47 47 H 1.09000 * 109.46745 * 293.57165 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3522 1.9961 0.5276 5 6 3.3690 1.2589 0.7017 6 7 3.1900 0.8040 2.0828 7 6 4.2575 0.6856 2.8969 8 8 5.3670 0.9555 2.4859 9 6 4.0750 0.2225 4.3049 10 8 2.9653 -0.0478 4.7159 11 7 5.1425 0.1036 5.1190 12 6 4.9716 -0.3309 6.4381 13 6 3.7510 -0.6746 7.0421 14 6 4.0088 -1.0469 8.3161 15 7 5.3387 -0.9356 8.5192 16 6 6.0470 -1.2359 9.7660 17 6 7.1366 -2.2410 9.4952 18 1 7.2864 -2.6187 8.4945 19 6 7.9417 -2.6793 10.5251 20 7 7.7624 -2.2161 11.7428 21 14 9.2930 -3.9246 10.1892 22 1 8.7553 -5.2978 10.3644 23 1 9.7838 -3.7592 8.7975 24 1 10.4138 -3.7070 11.1386 25 7 5.9239 -0.4885 7.3277 26 6 2.1971 1.7806 -1.4423 27 6 2.7740 3.1977 -1.4418 28 6 3.1591 0.8385 -2.1690 29 1 -0.3633 -1.0245 -0.0801 30 1 -0.3634 0.4428 0.9273 31 1 -0.3634 0.5816 -0.8472 32 1 3.8124 2.2545 0.7013 33 1 4.0269 0.5683 0.1741 34 1 2.3031 0.5887 2.4113 35 1 6.0295 0.3186 4.7902 36 1 2.7794 -0.6500 6.5711 37 1 3.2797 -1.3727 9.0432 38 1 5.3456 -1.6471 10.4922 39 1 6.4868 -0.3213 10.1634 40 1 7.0609 -1.5691 11.9170 41 1 1.2339 1.7806 -1.9526 42 1 2.0886 3.8688 -0.9242 43 1 3.7372 3.1976 -0.9317 44 1 2.9076 3.5360 -2.4693 45 1 2.8058 -0.1879 -2.0711 46 1 3.2041 1.1083 -3.2241 47 1 4.1528 0.9243 -1.7294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444517101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:21 Heat of formation + Delta-G solvation = -39.663790 kcal Electronic energy + Delta-G solvation = -28600.229816 eV Core-core repulsion = 24399.318742 eV Total energy + Delta-G solvation = -4200.911075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14893 -40.36452 -39.46181 -38.38268 -35.83299 -35.30713 -34.41614 -33.65234 -30.98077 -29.48755 -29.45700 -27.73216 -27.03120 -26.46434 -25.23529 -23.90175 -22.84666 -21.36127 -20.70093 -20.22150 -19.61735 -18.38271 -17.33032 -17.22547 -17.18071 -16.50737 -16.37640 -16.05304 -15.64925 -15.18178 -14.92381 -14.64005 -14.61775 -14.12695 -13.90086 -13.84436 -13.79514 -13.41103 -13.34934 -13.24116 -12.52816 -12.44522 -12.37063 -12.30628 -12.01735 -11.87948 -11.77460 -11.50215 -11.35359 -11.18036 -11.03520 -10.83958 -10.57721 -10.17333 -10.12922 -10.03492 -9.60308 -9.53315 -9.03668 -8.59134 -8.30809 -7.63774 -6.59731 -4.33890 1.17620 2.00802 2.58524 2.98167 3.10591 3.19227 3.37060 3.41618 3.58257 3.60460 3.77765 4.09218 4.26384 4.36898 4.40634 4.41428 4.68628 4.70105 4.87584 4.92382 5.06957 5.09327 5.13930 5.19902 5.27829 5.32126 5.33627 5.41674 5.50076 5.58289 5.62300 5.76510 5.86461 5.92867 6.02077 6.24702 6.32954 6.51086 6.63990 6.70370 6.85871 7.17327 7.28715 7.56528 7.67120 7.76373 7.91028 8.32432 8.44928 8.59432 9.34220 10.78095 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023091 B = 0.001862 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.312173 B =15031.890489 C =15476.183375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.377 6.377 3 C 0.080 3.920 4 H 0.071 0.929 5 C 0.118 3.882 6 N -0.694 5.694 7 C 0.516 3.484 8 O -0.516 6.516 9 C 0.514 3.486 10 O -0.499 6.499 11 N -0.599 5.599 12 C 0.253 3.747 13 C -0.283 4.283 14 C 0.053 3.947 15 N -0.313 5.313 16 C 0.248 3.752 17 C -0.609 4.609 18 H 0.064 0.936 19 C 0.023 3.977 20 N -0.905 5.905 21 Si 1.079 2.921 22 H -0.285 1.285 23 H -0.286 1.286 24 H -0.281 1.281 25 N -0.292 5.292 26 C -0.113 4.113 27 C -0.154 4.154 28 C -0.149 4.149 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.415 0.585 35 H 0.424 0.576 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.048 0.952 39 H 0.036 0.964 40 H 0.267 0.733 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.054 0.946 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.882 9.223 -25.959 31.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.296 6.296 3 C 0.021 3.979 4 H 0.089 0.911 5 C -0.005 4.005 6 N -0.348 5.348 7 C 0.296 3.704 8 O -0.391 6.391 9 C 0.293 3.707 10 O -0.373 6.373 11 N -0.247 5.247 12 C 0.000 4.000 13 C -0.314 4.314 14 C -0.097 4.097 15 N -0.095 5.095 16 C 0.130 3.870 17 C -0.647 4.647 18 H 0.083 0.917 19 C -0.182 4.182 20 N -0.540 5.540 21 Si 0.906 3.094 22 H -0.212 1.212 23 H -0.212 1.212 24 H -0.207 1.207 25 N -0.123 5.123 26 C -0.132 4.132 27 C -0.211 4.211 28 C -0.206 4.206 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.252 0.748 35 H 0.261 0.739 36 H 0.180 0.820 37 H 0.187 0.813 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.235 8.272 -24.915 29.400 hybrid contribution -2.349 1.026 -0.862 2.704 sum -15.584 9.298 -25.777 31.524 Atomic orbital electron populations 1.22844 0.80721 1.03135 1.00128 1.87987 1.19887 1.26734 1.94943 1.22434 0.94129 0.85613 0.95689 0.91140 1.21773 0.96792 1.01595 0.80387 1.45555 1.10697 1.66549 1.12002 1.19839 0.85091 0.79178 0.86260 1.90795 1.24044 1.48230 1.76063 1.19919 0.84654 0.79737 0.86346 1.90705 1.24096 1.47191 1.75263 1.41997 1.11464 1.63001 1.08235 1.19016 0.93549 1.02195 0.85258 1.21526 0.98896 1.16549 0.94472 1.22580 0.87065 1.01968 0.98104 1.48871 1.04372 1.46550 1.09703 1.19815 0.93179 0.97501 0.76513 1.22127 1.17637 1.26533 0.98397 0.91726 1.25930 1.00174 0.99696 0.92354 1.70829 1.32790 1.29330 1.21043 0.83386 0.75415 0.75060 0.75529 1.21194 1.21176 1.20695 1.77431 1.19436 1.23442 0.91962 1.21534 1.00568 0.95945 0.95167 1.21934 1.01410 0.95197 1.02566 1.21847 0.99109 0.99906 0.99764 0.89333 0.93710 0.93958 0.89181 0.89544 0.74847 0.73880 0.82012 0.81251 0.93472 0.94594 0.92256 0.90498 0.92428 0.91848 0.91969 0.91589 0.92664 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.79 101.05 1.09 1.23 16 2 O -0.38 -2.80 9.40 -35.23 -0.33 -3.13 16 3 C 0.08 0.48 1.99 -26.73 -0.05 0.43 16 4 H 0.07 0.35 7.84 -51.93 -0.41 -0.06 16 5 C 0.12 0.92 4.66 -4.04 -0.02 0.90 16 6 N -0.69 -6.76 5.44 -60.76 -0.33 -7.09 16 7 C 0.52 6.57 7.89 -11.64 -0.09 6.48 16 8 O -0.52 -7.49 16.48 5.49 0.09 -7.40 16 9 C 0.51 7.63 7.85 -11.64 -0.09 7.54 16 10 O -0.50 -7.95 13.60 5.46 0.07 -7.87 16 11 N -0.60 -9.94 5.43 -11.58 -0.06 -10.00 16 12 C 0.25 5.11 8.10 -154.55 -1.25 3.85 16 13 C -0.28 -5.44 9.60 -39.82 -0.38 -5.82 16 14 C 0.05 1.02 11.43 -17.24 -0.20 0.83 16 15 N -0.31 -7.25 3.67 -62.56 -0.23 -7.48 16 16 C 0.25 6.22 5.57 -5.19 -0.03 6.19 16 17 C -0.61 -17.10 9.24 -34.44 -0.32 -17.42 16 18 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 19 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 20 N -0.90 -26.26 13.65 55.43 0.76 -25.51 16 21 Si 1.08 25.08 29.90 -169.99 -5.08 20.00 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 N -0.29 -6.80 12.42 31.41 0.39 -6.41 16 26 C -0.11 -0.57 2.90 -90.62 -0.26 -0.83 16 27 C -0.15 -0.67 8.88 37.16 0.33 -0.34 16 28 C -0.15 -0.85 8.54 37.16 0.32 -0.54 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.16 7.69 -51.93 -0.40 -0.24 16 32 H 0.09 0.65 6.47 -51.93 -0.34 0.31 16 33 H 0.09 0.76 6.54 -51.93 -0.34 0.42 16 34 H 0.42 3.71 7.82 -40.82 -0.32 3.39 16 35 H 0.42 6.47 8.29 -40.82 -0.34 6.13 16 36 H 0.16 2.90 5.91 -52.49 -0.31 2.59 16 37 H 0.17 2.63 8.06 -52.48 -0.42 2.21 16 38 H 0.05 1.13 7.94 -51.92 -0.41 0.72 16 39 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 40 H 0.27 7.57 7.22 -40.82 -0.29 7.27 16 41 H 0.08 0.35 7.70 -51.93 -0.40 -0.05 16 42 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.06 0.30 6.48 -51.93 -0.34 -0.04 16 44 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.07 0.45 7.56 -51.93 -0.39 0.05 16 46 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.06 0.36 6.76 -51.93 -0.35 0.01 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -33.39 393.02 -6.65 -40.05 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.79 Total: 5.86 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.06 Total: 3.06 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.52 Total: -56.48 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.17 Total: -18.41 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.39 -6.65 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444517101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.382 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds